mRNA_L-elsbetiae_contig9412.18407.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9412.18407.1
Unique NamemRNA_L-elsbetiae_contig9412.18407.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9412.18407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9412contigL-elsbetiae_contig9412:894..2106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002200.1
Exons4
Model size542
Cds size345
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9412.18407.1prot_L-elsbetiae_contig9412.18407.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9412 894..1803 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.9293947-CDS-L-elsbetiae_contig9412:893..10221622817009.9293947-CDS-L-elsbetiae_contig9412:893..1022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9412 894..1022 -
1691683980.2359602-CDS-L-elsbetiae_contig9412:893..10221691683980.2359602-CDS-L-elsbetiae_contig9412:893..1022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9412 894..1022 -
1622817009.9401057-CDS-L-elsbetiae_contig9412:1156..12381622817009.9401057-CDS-L-elsbetiae_contig9412:1156..1238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9412 1157..1238 -
1691683980.246456-CDS-L-elsbetiae_contig9412:1156..12381691683980.246456-CDS-L-elsbetiae_contig9412:1156..1238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9412 1157..1238 -
1622817009.9507504-CDS-L-elsbetiae_contig9412:1669..18031622817009.9507504-CDS-L-elsbetiae_contig9412:1669..1803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9412 1670..1803 -
1691683980.2617881-CDS-L-elsbetiae_contig9412:1669..18031691683980.2617881-CDS-L-elsbetiae_contig9412:1669..1803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9412 1670..1803 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.9616158-UTR-L-elsbetiae_contig9412:1803..18911622817009.9616158-UTR-L-elsbetiae_contig9412:1803..1891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9412 1804..1891 -
1691683980.2729244-UTR-L-elsbetiae_contig9412:1803..18911691683980.2729244-UTR-L-elsbetiae_contig9412:1803..1891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9412 1804..1891 -
1622817009.9716156-UTR-L-elsbetiae_contig9412:1997..21061622817009.9716156-UTR-L-elsbetiae_contig9412:1997..2106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9412 1998..2106 -
1691683980.2826197-UTR-L-elsbetiae_contig9412:1997..21061691683980.2826197-UTR-L-elsbetiae_contig9412:1997..2106Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9412 1998..2106 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9412.18407.1

>prot_L-elsbetiae_contig9412.18407.1 ID=prot_L-elsbetiae_contig9412.18407.1|Name=mRNA_L-elsbetiae_contig9412.18407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MEVSDDDITNDFGGDFGGGESSDGDVDDGEGSAASTSSSTASSVPAPSSA
GAAESASSSPEDDYEPEPSEQQVAPAFGGAIPPVPASSAPSGNDKGDKRK
RKGKGKRKGRGKGKG
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mRNA from alignment at L-elsbetiae_contig9412:894..2106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9412.18407.1 ID=mRNA_L-elsbetiae_contig9412.18407.1|Name=mRNA_L-elsbetiae_contig9412.18407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1213bp|location=Sequence derived from alignment at L-elsbetiae_contig9412:894..2106- (Laminarionema elsbetiae ELsaHSoW15)
CAACCCACGGAGCTTCTATCCCGGGAGTTAGACCCTGACGACATCCCCGA
GGTGATACACACCACGTGTGGTACAGTAACAAAGACGGGTAGCAACATCA
ATATCAACGGTGGCGATGGCCGTGGTGGTGGCCGTGGCCGTGGCCGTGGT
GGTGGCCGTGGTGGTGGCCGTGGTGGTGGCCGTGGCGGTGGCCGTGGCGG
TGGCCGTGGCGGTAGCCGTGGCGGTGGCCGTGGTGGTGGCCGTGGTGGTG
GCCGTGGCGGTGGCCGTGGCGGTGGTCGTGGCGGTGGCTGCGGGGTCGCT
CCCATGGAAGTGAGCGACGATGATATCACCAATGACTTTGGCGGTGACTT
TGGCGGCGGCGAAAGCAGCGACGGGGACGTTGACGATGGCGAGGGTTCCG
CTGCGAGTACTTCGTCTTCGACGGCGTCGAGCGTCCCGTCTTCATCCGAT
ACCAGCAAGCAGCAGGAGGACTTGGATGACGAGCTGGACGCACTACCGTG
TCTTGCATGTGGCAAAAACGACGACATCCCAAACACTTTGCTCTGCGCCA
GGCCCATCGGGCGCAAGGAAGACGGCAGGTTCTGCGACAAGGCCTGCCAT
GTCCGATGCACAGATTTAGAAGATGTGCCAGAGGGAGATGTGAGTGAATA
TACTGTAAAAACAGATTCAAGTAAGTCTCCCAGCAGGAACTAGCAATTTT
GCGTCTTCTCTCCGTGGCACCCATTAATCCTCTGAGTTGACAAAGGCGAT
CATTCCTTCTCTTTTTACTGCCCTATGTATTGCTGTCTCAGTGGTATTGC
CCAGAGTGTCTGGAGGAGGGGTTTGTACCTCCGCCAGGCGGCGCCATCCC
TCCCGTTCCCGCGTCGAGTGCCCCGTCTTCAGCCGGTGCCGCCGAGAGTG
CATCGTCCTCACCGGAGGACGATTACGAGCCAGAGCCCAGCGAGCAGCAG
GTGAGGGAGTGCGCTATCTAAGCGCGGTAGCTAGAAAGGATGGTTAGGAT
ATGTTGCGCTGAACCTCGCGTGTGTGTTTGTGCTTTCCGTCACCTAACTT
ATCACTCGTTACTCTTCTCGTTTGAACCGTTCAGGTTGCACCTGCGTTTG
GCGGTGCTATCCCTCCCGTTCCCGCGTCGAGTGCCCCGTCTGGCAATGAC
AAGGGCGATAAGCGCAAGCGCAAGGGCAAGGGCAAGAGGAAGGGCAGGGG
CAAGGGCAAGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9412:894..2106-

>mRNA_L-elsbetiae_contig9412.18407.1 ID=mRNA_L-elsbetiae_contig9412.18407.1|Name=mRNA_L-elsbetiae_contig9412.18407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig9412:894..2106- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGTGAGCGACGATGATATCACCAATGACTTTGGCGGTGACTTTGG
CGGCGGCGAAAGCAGCGACGGGGACGTTGACGATGGCGAGGGTTCCGCTG
CGAGTACTTCGTCTTCGACGGCGTCGAGCGTCCCATGGAAGTGAGCGACG
ATGATATCACCAATGACTTTGGCGGTGACTTTGGCGGCGGCGAAAGCAGC
GACGGGGACGTTGACGATGGCGAGGGTTCCGCTGCGAGTACTTCGTCTTC
GACGGCGTCGAGCGTCCCTGCCCCGTCTTCAGCCGGTGCCGCCGAGAGTG
CATCGTCCTCACCGGAGGACGATTACGAGCCAGAGCCCAGCGAGCAGCAG
TGCCCCGTCTTCAGCCGGTGCCGCCGAGAGTGCATCGTCCTCACCGGAGG
ACGATTACGAGCCAGAGCCCAGCGAGCAGCAGGTTGCACCTGCGTTTGGC
GGTGCTATCCCTCCCGTTCCCGCGTCGAGTGCCCCGTCTGGCAATGACAA
GGGCGATAAGCGCAAGCGCAAGGGCAAGGGCAAGAGGAAGGGCAGGGGCA
AGGGCAAGGGCGTTGCACCTGCGTTTGGCGGTGCTATCCCTCCCGTTCCC
GCGTCGAGTGCCCCGTCTGGCAATGACAAGGGCGATAAGCGCAAGCGCAA
GGGCAAGGGCAAGAGGAAGGGCAGGGGCAAGGGCAAGGGC
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