mRNA_L-elsbetiae_contig9410.18406.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9410.18406.1
Unique NamemRNA_L-elsbetiae_contig9410.18406.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9410.18406.1 vs. uniprot
Match: A0A6H5JGK6_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK6_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    4 QGCNADRCLVCLMCMRPCERCGHAVSLERLRERMASMTGFIEKWSTFGLTRDIKEQQXXXXXXXXXXXXXXASSTSELPPLPHRSLTMRAEVAQRWMAFIA 306
            +GCNADRCL+C+M  RPC+ CGH VS +R+RE MAS TGFIEKWS F L ++ + ++              AS+       P RS+ +RAEVA RWM+  A
Sbjct:  183 EGCNADRCLLCVMRSRPCDMCGHPVSADRVREHMASTTGFIEKWSKFCLGKNSRRREESVAAVAG------ASAGPSEVHHPPRSIALRAEVAHRWMSVAA 277
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BLAST of mRNA_L-elsbetiae_contig9410.18406.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.320e-11
Identity = 38/100 (38.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:    4 QGCNADRCLVCLMCMRPCERCGHAVSLERLRERMASMTGFIEKWSTFGLTRDIKEQQXXXXXXXXXXXXXXASSTSELPPLPHRSLTMRAEVAQRWMAFI 303
            +GC+ADRCLVCLM MRPC+ CG  VS+ R+RE M S++G + +W                             ++SEL   P     +R EV QRW+AF+
Sbjct:   92 EGCDADRCLVCLMRMRPCDTCGQTVSIGRVREAMDSVSGRVSRWML---------------------------ASSEL---PEYRCPVRVEVYQRWVAFL 161
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BLAST of mRNA_L-elsbetiae_contig9410.18406.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.260e-10
Identity = 38/100 (38.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query:    4 QGCNADRCLVCLMCMRPCERCGHAVSLERLRERMASMTGFIEKWSTFGLTRDIKEQQXXXXXXXXXXXXXXASSTSELPPLPHRSLTMRAEVAQRWMAFI 303
            +GC+ADRCLVCLM MRPC+ CG  VS+ R+RE M S+ G + +W                             ++SEL   P     +R EV QRW+AF+
Sbjct:    9 EGCDADRCLVCLMRMRPCDTCGQTVSIGRVREAMDSVAGRVSRWML---------------------------ASSEL---PEYRCPVRVEVYQRWIAFL 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9410.18406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGK6_9PHAE1.120e-1947.52WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5J8V2_9PHAE9.320e-1138.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FX18_ECTSI1.260e-1038.00KH domain containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9410contigL-elsbetiae_contig9410:3464..4583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.8819363-CDS-L-elsbetiae_contig9410:3463..36731622817009.8819363-CDS-L-elsbetiae_contig9410:3463..3673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9410 3464..3673 -
1691683980.2047784-CDS-L-elsbetiae_contig9410:3463..36731691683980.2047784-CDS-L-elsbetiae_contig9410:3463..3673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9410 3464..3673 -
1622817009.8964748-CDS-L-elsbetiae_contig9410:4484..45831622817009.8964748-CDS-L-elsbetiae_contig9410:4484..4583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9410 4485..4583 -
1691683980.2213154-CDS-L-elsbetiae_contig9410:4484..45831691683980.2213154-CDS-L-elsbetiae_contig9410:4484..4583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9410 4485..4583 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9410.18406.1prot_L-elsbetiae_contig9410.18406.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9410 3464..4583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9410.18406.1

>prot_L-elsbetiae_contig9410.18406.1 ID=prot_L-elsbetiae_contig9410.18406.1|Name=mRNA_L-elsbetiae_contig9410.18406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MQGCNADRCLVCLMCMRPCERCGHAVSLERLRERMASMTGFIEKWSTFGL
TRDIKEQQQQRQQLGAAATAAPASSTSELPPLPHRSLTMRAEVAQRWMAF
IAA
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mRNA from alignment at L-elsbetiae_contig9410:3464..4583-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9410.18406.1 ID=mRNA_L-elsbetiae_contig9410.18406.1|Name=mRNA_L-elsbetiae_contig9410.18406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1120bp|location=Sequence derived from alignment at L-elsbetiae_contig9410:3464..4583- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGATGTAACGCCGACAGGTGCCTGGTCTGCCTGATGTGCATGAG
ACCTTGTGAGCGTTGCGGGCACGCCGTCAGCCTCGAGCGGCTCCGCGAGG
TGCGTGCGTGCGCGCAAGCATGCCTACCGTAGCGATTGGTTGAGACGTTG
TCCGATCGCTGTTTTTTGTGGCCCTTTTTTTCTAAGCTGTATGTATGTAG
CTTGTTTATTTTTCTTTCTCTCTTGTCCTGCATTAAAACGTTATGTATGT
AGCGGTCTACATACCATAGGTGACGCAAGATACCACACCCCCTGGACTGT
CAGCGGGACTGTCAGGTATTACCGTAGGTGACGCAAGATACCACACCCCC
TGGACGGATTTTCAAAGCTCGATTCCTCCCCCCAGCAAGAAGAGTGTCTG
TGCCTTAAGGGGTGGTGGCGTTGGAAAGATCTAGTCGAGGGCTGTCCGAA
AAATGTCTCGTTTTGGCGCTGGCACCCTCTTCGTTACGGAGTAACGGAGC
TCTAGTAAAAGTCGGCCCAGGGGGTGTGGTATCTTTATGTCGCCTACGGT
ATATTTGTAGGAGTTCCGGCATGTTGTGTTTCTCGTTGTTCGTGCTGTTT
GTTTGACGACGGTGCGCTCTTTTGGGCAGTACGTGGCATTTACGCATCAT
GGCCCGTGCGTGTCTTCTTCCTCTGAGACACCCCTCGCCAGTGAGGTAAG
TGGGCATGACTTTGTTGTTCCGCGGTACTGTACTCCGTTGCGGCGGTGCG
TCGACCCCTCCGCCACCAAGCATGCCCTAGGGACGGCGGTTGTTACCTCG
CAAGAAAACCCCATACATACGTATGTACCCCTTCACCCCACCCCACCCTC
CCTGCCGCGGCCGCTCCATGCGCGGCGCCCCCACGTCCCCGAACGGCGTC
TACCGAGCAGAGGATGGCATCGATGACGGGCTTCATCGAGAAATGGTCGA
CCTTCGGCCTGACAAGAGACATCAAGGAACAGCAGCAGCAGCGGCAGCAG
CTCGGGGCGGCGGCGACGGCGGCGCCGGCGTCTTCGACGTCCGAGCTGCC
GCCGCTGCCTCACCGCTCGCTCACGATGCGCGCGGAGGTCGCCCAGCGCT
GGATGGCCTTCATCGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9410:3464..4583-

>mRNA_L-elsbetiae_contig9410.18406.1 ID=mRNA_L-elsbetiae_contig9410.18406.1|Name=mRNA_L-elsbetiae_contig9410.18406.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig9410:3464..4583- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGATGTAACGCCGACAGGTGCCTGGTCTGCCTGATGTGCATGAG
ACCTTGTGAGCGTTGCGGGCACGCCGTCAGCCTCGAGCGGCTCCGCGAGA
TGCAGGGATGTAACGCCGACAGGTGCCTGGTCTGCCTGATGTGCATGAGA
CCTTGTGAGCGTTGCGGGCACGCCGTCAGCCTCGAGCGGCTCCGCGAGAG
GATGGCATCGATGACGGGCTTCATCGAGAAATGGTCGACCTTCGGCCTGA
CAAGAGACATCAAGGAACAGCAGCAGCAGCGGCAGCAGCTCGGGGCGGCG
GCGACGGCGGCGCCGGCGTCTTCGACGTCCGAGCTGCCGCCGCTGCCTCA
CCGCTCGCTCACGATGCGCGCGGAGGTCGCCCAGCGCTGGATGGCCTTCA
TCGCCGCCAGGATGGCATCGATGACGGGCTTCATCGAGAAATGGTCGACC
TTCGGCCTGACAAGAGACATCAAGGAACAGCAGCAGCAGCGGCAGCAGCT
CGGGGCGGCGGCGACGGCGGCGCCGGCGTCTTCGACGTCCGAGCTGCCGC
CGCTGCCTCACCGCTCGCTCACGATGCGCGCGGAGGTCGCCCAGCGCTGG
ATGGCCTTCATCGCCGCC
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