mRNA_L-elsbetiae_contig9406.18399.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9406.18399.1
Unique NamemRNA_L-elsbetiae_contig9406.18399.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A6H5JRC2_9PHAE (Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-16
Identity = 39/49 (79.59%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRGGXXXXXXCPCLEESAV 147
            DGNLCRCTGYRPILDAAKSLGVD GRPAGCCRGG      CPCLE  A+
Sbjct:  158 DGNLCRCTGYRPILDAAKSLGVDAGRPAGCCRGGSGG---CPCLESKAM 203
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: D7G4V3_ECTSI (Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4V3_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.660e-15
Identity = 38/48 (79.17%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRGGXXXXXXCPCLEESA 144
            DGNLCRCTGYRPILDAAKSLGVDGGR AGCCRG       CPCLE  A
Sbjct:  158 DGNLCRCTGYRPILDAAKSLGVDGGRRAGCCRG---DSGGCPCLESKA 202
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: W7TFQ7_9STRA (Xanthine dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFQ7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.660e-11
Identity = 38/67 (56.72%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRGGXXXXXXCPCLEESAVP-PSAGLGPAPTSASAEG 198
            DGNLCRCTGYRP+LDAAK+L   G R AGCCRGG      CPC E S  P P+ G       A+ EG
Sbjct:  196 DGNLCRCTGYRPLLDAAKTLLGPGARGAGCCRGGKGS---CPCQEASDKPVPTEGAADIHVHATTEG 259
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A836C8N1_9STRA (Xanthine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.660e-10
Identity = 31/48 (64.58%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRGGXXXXXXCPCLEESA 144
            DGNLCRCTGYRPILDAAKSL  D   P GCCRG       CPC+   A
Sbjct:  146 DGNLCRCTGYRPILDAAKSLASDARAPQGCCRGSAGGG--CPCMAAKA 191
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A7S3H3P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3P9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.350e-7
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDG---GRPAGCCRGGXXXXXXCPCLE 135
            DGNLCRCTGYRPILDAA+SL  +      PAGCC+G       CPC E
Sbjct:  166 DGNLCRCTGYRPILDAARSLSNNKESHAPPAGCCKGNGGK---CPCAE 210
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A0E9NLT7_SAICN (Uncharacterized protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NLT7_SAICN)

HSP 1 Score: 55.8 bits (133), Expect = 8.780e-7
Identity = 23/32 (71.88%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCR 96
            DGNLCRCTGYRPILDA K+     GR  GCCR
Sbjct:  258 DGNLCRCTGYRPILDAGKTFATGCGRAGGCCR 289
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A1Y1YDJ4_9FUNG (Xanthine dehydrogenase n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDJ4_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 1.630e-6
Identity = 30/49 (61.22%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRGGXXXXXXCPCLEESAV 147
            DGNLCRCTGYRPILDAAK+  V    P+G C GG    XXC C++E  V
Sbjct:  146 DGNLCRCTGYRPILDAAKTFAV----PSGGCCGGKASGXXC-CMDEGPV 189
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A3R7FYU6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FYU6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-6
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGG 75
            DGNLCRCTGYRPILDAAKS GVD G
Sbjct:  127 DGNLCRCTGYRPILDAAKSFGVDSG 151
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A8H7ZUX9_9FUNG (Uncharacterized protein n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZUX9_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 3.680e-6
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRG 99
            DGNLCRCTGYRPILDAAK+   D  R AGCC G
Sbjct:  170 DGNLCRCTGYRPILDAAKTFACDK-RNAGCCGG 201
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BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Match: A0A7S2RHL9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHL9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.120e-6
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 DGNLCRCTGYRPILDAAKSLGVDGGRPAGCC 93
            DGNLCRCTGYRPILDAAKSL    G  +G C
Sbjct:   52 DGNLCRCTGYRPILDAAKSLCCKAGGSSGSC 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9406.18399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRC2_9PHAE1.170e-1679.59Xanthine dehydrogenase n=1 Tax=Ectocarpus sp. CCAP... [more]
D7G4V3_ECTSI3.660e-1579.17Xanthine dehydrogenase n=3 Tax=Ectocarpus TaxID=28... [more]
W7TFQ7_9STRA5.660e-1156.72Xanthine dehydrogenase n=2 Tax=Monodopsidaceae Tax... [more]
A0A836C8N1_9STRA3.660e-1064.58Xanthine dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A7S3H3P9_9STRA2.350e-760.42Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A0E9NLT7_SAICN8.780e-771.88Uncharacterized protein n=2 Tax=Saitoella complica... [more]
A0A1Y1YDJ4_9FUNG1.630e-661.22Xanthine dehydrogenase n=2 Tax=Basidiobolus merist... [more]
A0A3R7FYU6_9STRA2.230e-692.00Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8H7ZUX9_9FUNG3.680e-675.76Uncharacterized protein n=1 Tax=Olpidium bornovanu... [more]
A0A7S2RHL9_9STRA5.120e-674.19Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9406contigL-elsbetiae_contig9406:2152..3895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7G4V2
KEGG rclassRC00143,RC02017,RC02199
KEGG koko:K00106
KEGG ReactionR01768,R01769,R02103,R02107,R07942,R07977,R07978,R07979,R08235
KEGG Pathwayko00230,ko00232,ko00983,ko01100,ko01110,ko01120,ko04146,map00230,map00232,map00983,map01100,map01110,map01120,map04146
KEGG ModuleM00546
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004854,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006144,GO:0006145,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009112,GO:0009115,GO:0009987,GO:0016491,GO:0016725,GO:0016726,GO:0016903,GO:0019439,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043546,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046110,GO:0046113,GO:0046483,GO:0046700,GO:0048037,GO:0050660,GO:0050662,GO:0051536,GO:0051537,GO:0051540,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0072523,GO:0097159,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.Xanthine dehydrogenase
EggNOG OGsCOG4631@1,KOG0430@2759
EC1.17.1.4,1.17.3.2
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons3
Model size320
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9406.18399.1prot_L-elsbetiae_contig9406.18399.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9406 2154..3895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817009.433629-CDS-L-elsbetiae_contig9406:2153..21781622817009.433629-CDS-L-elsbetiae_contig9406:2153..2178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9406 2154..2178 -
1691683979.8598526-CDS-L-elsbetiae_contig9406:2153..21781691683979.8598526-CDS-L-elsbetiae_contig9406:2153..2178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9406 2154..2178 -
1622817009.4475734-CDS-L-elsbetiae_contig9406:3045..33131622817009.4475734-CDS-L-elsbetiae_contig9406:3045..3313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9406 3046..3313 -
1691683979.908112-CDS-L-elsbetiae_contig9406:3045..33131691683979.908112-CDS-L-elsbetiae_contig9406:3045..3313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9406 3046..3313 -
1622817009.463097-CDS-L-elsbetiae_contig9406:3870..38951622817009.463097-CDS-L-elsbetiae_contig9406:3870..3895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9406 3871..3895 -
1691683979.9229891-CDS-L-elsbetiae_contig9406:3870..38951691683979.9229891-CDS-L-elsbetiae_contig9406:3870..3895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9406 3871..3895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9406.18399.1

>prot_L-elsbetiae_contig9406.18399.1 ID=prot_L-elsbetiae_contig9406.18399.1|Name=mRNA_L-elsbetiae_contig9406.18399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
DGNLCRCTGYRPILDAAKSLGVDGGRPAGCCRGGGGGGGGCPCLEESAVP
PSAGLGPAPTSASAEGVGAEAAEDGGGGGGGGGCQKRECTGSRAREPRFS
ERYLDT
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mRNA from alignment at L-elsbetiae_contig9406:2152..3895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9406.18399.1 ID=mRNA_L-elsbetiae_contig9406.18399.1|Name=mRNA_L-elsbetiae_contig9406.18399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1744bp|location=Sequence derived from alignment at L-elsbetiae_contig9406:2152..3895- (Laminarionema elsbetiae ELsaHSoW15)
GACGGCAACCTCTGTCGCTGCACCGGTGCGTCGAAGCTGTTTTTGCTGCC
GCTGCTGCTGCCGCTGCTGCTGCTCTTGCTGCTGTTGTTTTTATTTGGGT
GATGCTGTAATTGTTGCTGTTGCTGTTGGTACTGCCGTTGTTGTTGTTAT
TGAGGGGCTCGACGGCAGCCTCTGCCGCTGCACTGGTGCGTCGAAGCTGT
GTTTGCTGCCGCTGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCCG
CTGCCGCTCCCGCTGCTGTTGTTTGTTTTGATGTTGTTATTGTTGCTGTT
GCTGTTGCTGTTGGTACTGCCGCTGTTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGGTGGGCGGGCATGCTGTAGTCCACAACTTCTCT
GGTCCGCACGGCTGAGGACAGGCCGTCCTCGCCGAACACGCATCATGCAG
GCCGCGTTTTTGAGGCGGTTGTTGCTGAAGCTGGCGGTTGATTCCCGGTG
GTTGAACCCCCGCATGCTTTTCCCCTGCTTGGTGCACTCACTGCTGTGGA
ATGAACGTTCACTTGTATGCATCTTCGTTCAGGTTACCGGCCCATTCTCG
ACGCCGCAAAGAGCCTCGGCGTCGACGGGGGGCGGCCTGCCGGGTGCTGC
CGGGGCGGCGGCGGCGGCGGTGGTGGTTGCCCTTGCCTTGAGGAATCGGC
GGTGCCCCCGTCCGCCGGCCTTGGCCCCGCTCCTACCTCCGCCTCCGCTG
AGGGCGTCGGGGCCGAGGCCGCCGAGGACGGCGGCGGCGGCGGTGGTGGC
GGGGGCTGCCAGAAGCGCGAGTGTACCGGGAGTCGAGCGAGGGAACCAAG
GTGATGATGATGCACGCATCCGTGCGCGCTCCTGCGGTCGCTTGGCAAAT
GTTTGCGGAAGCGTTTTTTTTTTCGTTTTTTTTTTCCAGTCCGTTTTTGC
GCAGCAGCTGTCTTGCGAATAGCGGGTATGTAGCTGGCTGGCATGTGGCG
GTTCCCCTTGTGACCCGTGTGGGCCGTCGGCGCCCGAGCTGCCGTTTCAG
CAGCTGTACTGCGTTAGTCTACATGGTCCCCGCACGGCGGAGCGGATCGT
GTTGGAGAATGCGTGTCCCGCCGCAGAACATTAGCATTCTGCTGGACCGG
TTTTTATGGGAGCAGAAAAGTTGCGAAGGGAGTCAAGGTGTTTTCGAAAA
TTCCTGTCGGGAAGTTTTCTTTCGGTGAAGCTTTTGCTGCGCTCTCTTGA
TATGGAGCGGCGAAAGTTTTAGTTTTGTTCGCGGAGCTGGTGGGATGTGG
AGGCGTGATCCTTGGTTTTTTATTGAGTAACAACGGCGAGAAGCAAGCAC
ACCTCCTTCATTCATATACGCGCCGCGAAACCGACCAGGGCGCCTCACAA
AAGCAGGGAAGTCGAGTTGGTGGTATCAAATTCGGCGTCATGCCTTATTT
CAATCGAAACTGCGAAGGCCTCAATCGTGCTCTCGTTTGACAAAACAACC
TGAGGACGCAGGTTATTTTACTTGATTTATCTACACAGCTGCGGGCATCG
CAGGCAATTCCTTCTTACTCGTCGTGCTAGTGGTCTGACTCGGACGTTCA
TCTGTCGTGTGGATCGCGTGCATACACATGGACACTTAAGGCCGCACGCA
ACCACGATGGTTTGCTTCCCCGCGTGTTTCGTTTCGGGTTACGCCGCGGG
CCACTCGCTCTCTGCAGGTTCAGCGAGAGGTATCTGGACACGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9406:2152..3895-

>mRNA_L-elsbetiae_contig9406.18399.1 ID=mRNA_L-elsbetiae_contig9406.18399.1|Name=mRNA_L-elsbetiae_contig9406.18399.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9406:2152..3895- (Laminarionema elsbetiae ELsaHSoW15)
GACGGCAACCTCTGTCGCTGCACCGGACGGCAACCTCTGTCGCTGCACCG
GTTACCGGCCCATTCTCGACGCCGCAAAGAGCCTCGGCGTCGACGGGGGG
CGGCCTGCCGGGTGCTGCCGGGGCGGCGGCGGCGGCGGTGGTGGTTGCCC
TTGCCTTGAGGAATCGGCGGTGCCCCCGTCCGCCGGCCTTGGCCCCGCTC
CTACCTCCGCCTCCGCTGAGGGCGTCGGGGCCGAGGCCGCCGAGGACGGC
GGCGGCGGCGGTGGTGGCGGGGGCTGCCAGAAGCGCGAGTGTACCGGGAG
TCGAGCGAGGGAACCAAGGTTACCGGCCCATTCTCGACGCCGCAAAGAGC
CTCGGCGTCGACGGGGGGCGGCCTGCCGGGTGCTGCCGGGGCGGCGGCGG
CGGCGGTGGTGGTTGCCCTTGCCTTGAGGAATCGGCGGTGCCCCCGTCCG
CCGGCCTTGGCCCCGCTCCTACCTCCGCCTCCGCTGAGGGCGTCGGGGCC
GAGGCCGCCGAGGACGGCGGCGGCGGCGGTGGTGGCGGGGGCTGCCAGAA
GCGCGAGTGTACCGGGAGTCGAGCGAGGGAACCAAGGTTCAGCGAGAGGT
ATCTGGACACGGTTCAGCGAGAGGTATCTGGACACG
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