mRNA_L-elsbetiae_contig9384.18380.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9384.18380.1
Unique NamemRNA_L-elsbetiae_contig9384.18380.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9384.18380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9384contigL-elsbetiae_contig9384:5902..6669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817007.7750115-CDS-L-elsbetiae_contig9384:5901..63811622817007.7750115-CDS-L-elsbetiae_contig9384:5901..6381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9384 5902..6381 +
1691683978.7234826-CDS-L-elsbetiae_contig9384:5901..63811691683978.7234826-CDS-L-elsbetiae_contig9384:5901..6381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9384 5902..6381 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817007.7853425-UTR-L-elsbetiae_contig9384:6381..66691622817007.7853425-UTR-L-elsbetiae_contig9384:6381..6669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9384 6382..6669 +
1691683978.733744-UTR-L-elsbetiae_contig9384:6381..66691691683978.733744-UTR-L-elsbetiae_contig9384:6381..6669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9384 6382..6669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9384.18380.1prot_L-elsbetiae_contig9384.18380.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9384 5902..6381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9384.18380.1

>prot_L-elsbetiae_contig9384.18380.1 ID=prot_L-elsbetiae_contig9384.18380.1|Name=mRNA_L-elsbetiae_contig9384.18380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
VPARVGRCAPDGRATGNGGHGRHEAESERDSENGSGCGVLDAPDGGAARG
LSPLRLAPRFARPLVRLVLPTHLHATLVREPAERDDRETKSEHGSENGSA
YAFRDGPVDGAASRLALHRVAPSLNRRGRSDRTRRWAGCSDRTRRWVGHS
GPRSLSGRC*
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mRNA from alignment at L-elsbetiae_contig9384:5902..6669+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9384.18380.1 ID=mRNA_L-elsbetiae_contig9384.18380.1|Name=mRNA_L-elsbetiae_contig9384.18380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=768bp|location=Sequence derived from alignment at L-elsbetiae_contig9384:5902..6669+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCTGCGAGGGTCGGTCGATGCGCGCCTGACGGGAGGGCGACGGGGAA
CGGGGGGCACGGGAGGCATGAGGCGGAGAGCGAACGCGATTCGGAGAACG
GGAGCGGCTGCGGTGTCCTCGACGCTCCTGACGGCGGCGCCGCTCGCGGT
CTCTCTCCTCTTCGTCTCGCACCTCGGTTTGCTCGGCCGCTTGTGCGACT
GGTGCTCCCGACACACCTCCACGCGACCCTGGTCCGGGAACCTGCGGAGA
GGGACGACCGCGAGACGAAGAGCGAACACGGCTCGGAGAACGGGAGCGCG
TACGCCTTCCGCGATGGTCCTGTCGACGGTGCTGCGAGCCGCCTCGCTCT
CCATCGCGTGGCCCCGTCCCTGAATCGTCGCGGGCGCTCCGACCGAACTC
GTCGGTGGGCGGGATGCTCCGACCGAACTCGTCGGTGGGTGGGACATAGC
GGTCCGAGAAGTCTGAGCGGTCGTTGCTGACGTTGGACATACCTGCATGT
TTCCGACAAGAAAAAGGATGGTACGTGCAGCGCACCAGAACGGGAGGAAG
GGAACGCGCCCCGACGAAGAAAAATATCCCGTGCAGAATTGGTCAGCAAG
CTACAAGCACGAGTGTGAACGATGAGAAGTAGAGAGACACGTGAGTGCGA
CATGCACGTGAGTGCGACATGCACACTGGCGATGAATCAATGTCTCGGGG
AAAGAAAACAAGGTGTGATATAAGGTGTCACTCACCTGCGTAGAAGAAGC
ACCTATGTTCATCCACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9384:5902..6669+

>mRNA_L-elsbetiae_contig9384.18380.1 ID=mRNA_L-elsbetiae_contig9384.18380.1|Name=mRNA_L-elsbetiae_contig9384.18380.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig9384:5902..6669+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCTGCGAGGGTCGGTCGATGCGCGCCTGACGGGAGGGCGACGGGGAA
CGGGGGGCACGGGAGGCATGAGGCGGAGAGCGAACGCGATTCGGAGAACG
GGAGCGGCTGCGGTGTCCTCGACGCTCCTGACGGCGGCGCCGCTCGCGGT
CTCTCTCCTCTTCGTCTCGCACCTCGGTTTGCTCGGCCGCTTGTGCGACT
GGTGCTCCCGACACACCTCCACGCGACCCTGGTCCGGGAACCTGCGGAGA
GGGACGACCGCGAGACGAAGAGCGAACACGGCTCGGAGAACGGGAGCGCG
TACGCCTTCCGCGATGGTCCTGTCGACGGTGCTGCGAGCCGCCTCGCTCT
CCATCGCGTGGCCCCGTCCCTGAATCGTCGCGGGCGCTCCGACCGAACTC
GTCGGTGGGCGGGATGCTCCGACCGAACTCGTCGGTGGGTGGGACATAGC
GGTCCGAGAAGTCTGAGCGGTCGTTGCTGAGTGCCTGCGAGGGTCGGTCG
ATGCGCGCCTGACGGGAGGGCGACGGGGAACGGGGGGCACGGGAGGCATG
AGGCGGAGAGCGAACGCGATTCGGAGAACGGGAGCGGCTGCGGTGTCCTC
GACGCTCCTGACGGCGGCGCCGCTCGCGGTCTCTCTCCTCTTCGTCTCGC
ACCTCGGTTTGCTCGGCCGCTTGTGCGACTGGTGCTCCCGACACACCTCC
ACGCGACCCTGGTCCGGGAACCTGCGGAGAGGGACGACCGCGAGACGAAG
AGCGAACACGGCTCGGAGAACGGGAGCGCGTACGCCTTCCGCGATGGTCC
TGTCGACGGTGCTGCGAGCCGCCTCGCTCTCCATCGCGTGGCCCCGTCCC
TGAATCGTCGCGGGCGCTCCGACCGAACTCGTCGGTGGGCGGGATGCTCC
GACCGAACTCGTCGGTGGGTGGGACATAGCGGTCCGAGAAGTCTGAGCGG
TCGTTGCTGA
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