mRNA_L-elsbetiae_contig937.18370.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig937.18370.1 vs. uniprot
Match: D7FQ28_ECTSI (Similar to calcyphosine-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ28_ECTSI) HSP 1 Score: 738 bits (1906), Expect = 2.170e-256 Identity = 415/607 (68.37%), Postives = 474/607 (78.09%), Query Frame = 1 Query: 1 GVVSFALYLLQPVVPSGDLFLVFEFSHYVIFFIAIFTVLQLVVLGASTYPIKRRWDSAAYKSKDELLEGYRAMILRTRRCSIPMFGLGRVSLDLFHWGVNWRRIDAVHYHIARSVFIRQHGRSANFDFARYACLVTDRQILGMANISLSSWLALLVFRWVWYSFQKAFASDVDTVSYEAWFVFGVVLCLLELSLLFVCTLGVRRVCIKLGADPKDPIKTMDAVLERIWVAPLTHMQHAASMHVISPGEMTAINENCPYEAPGDATGVAATAARSSFAGKPGTKAGAAAIHGSEGGGGLQSG--GVAGDAGAWAAEGLRMETKGDGIPNITMRDAFLLGSGKAYGRAVDILMLLNSYYLAFFTVYFISRATKSSTEWVWIIVLPLPILYGVLMAYRRVLPLIALLSTIVMVQATDVADVEQEAEELNRIRRKVVMRVEDVLEQEFKASQACAKKDVMCLEAQSSAAYILKRWDEDDNGSLSYKELEKGLQEIGLVLSSKQRRELLRLADPDRSGSVDIKELTELFYDVEVEMAAAAAVKDEATGRRGSVSGGAMRHTFSDDGRPALGVNVNVGKFRTG----------GNANERVERLLWRRASEKWT 1785 GVVSFALYLL PVV GDLFLVFEFSHYVIFFIAIFTVLQLV+LGASTYPIKRRWD AAYKSK+ELLEGYRAMI RT + SIPMFGLGRVSLD+FHWG NW+ IDAV YH+ARSVFIRQH ++ANFDFARYACLVTDRQILGMAN+SL+SWLALLVFRWV Y Q + D TVS+ AWFVFG+VLCLLELSLLF C LGVRRVCIKLGADP+DP+KT+DAVLERIWVAP+TH+QHAASMH I +A+ E + PG++ V A A A +HGSEGGGGL++G + +A E M +G IP ITMRDAF+L GKAY +AV+ILMLLNSYYLAF+ VYFISRA+KS TEWVWIIVLPLPIL GVLMAYRRVLPLIALLSTIVM+Q TDVADVEQEAEELN++RRK+VMRVEDVLEQEFKA CA+ + Q+SAA++LKRWDEDDNG+LS++EL KGL+EIGL+LSSKQRREL+RLADPDRSG VDIKEL EL YDVEVE+AA +V+ E + + + G M T S +N VG RTG G N+RVERLL +RASEKW+ Sbjct: 4 GVVSFALYLLHPVVEEGDLFLVFEFSHYVIFFIAIFTVLQLVMLGASTYPIKRRWDIAAYKSKEELLEGYRAMIARTHKWSIPMFGLGRVSLDVFHWGSNWKWIDAVQYHLARSVFIRQHRQNANFDFARYACLVTDRQILGMANVSLASWLALLVFRWVSYGLQVGLSRDGGTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIG---RSALGEGATSDTPGNSCAVDADQA--------------AMVHGSEGGGGLEAGRSAIRSTMPDFAEE---MPMRGANIPEITMRDAFVLPIGKAYKQAVEILMLLNSYYLAFYAVYFISRASKSETEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKA---CAESGETRADGQTSAAFLLKRWDEDDNGNLSHQELHKGLEEIGLLLSSKQRRELIRLADPDRSGGVDIKELAELLYDVEVEIAAGRSVEGEE--QAAAAAPGRMGLTTS--------LNTKVGFRRTGSGLRPNGLSDGGVNDRVERLLRKRASEKWS 577
BLAST of mRNA_L-elsbetiae_contig937.18370.1 vs. uniprot
Match: A0A6H5JCN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN8_9PHAE) HSP 1 Score: 598 bits (1543), Expect = 7.230e-202 Identity = 325/453 (71.74%), Postives = 368/453 (81.24%), Query Frame = 1 Query: 1 GVVSFALYLLQPVVPSGDLFLVFEFSHYVIFFIAIFTVLQLVVLGASTYPIKRRWDSAAYKSKDELLEGYRAMILRTRRCSIPMFGLGRVSLDLFHWGVNWRRIDAVHYHIARSVFIRQHGRSANFDFARYACLVTDRQILGMANISLSSWLALLVFRWVWYSFQKAFASDVDTVSYEAWFVFGVVLCLLELSLLFVCTLGVRRVCIKLGADPKDPIKTMDAVLERIWVAPLTHMQHAASMH-VISPGEMTAINENCPYEAPGDATGVAATAARSSFAGKPGTKAGAAAIHGSEGGGGLQSGGVAGDAGAWAAEGLRMETKGDGIPNITMRDAFLLGSGKAYGRAVDILMLLNSYYLAFFTVYFISRATKSSTEWVWIIVLPLPILYGVLMAYRRVLPLIALLSTIVMVQATDVADVEQEAEELNRIRRKVVMRVEDVLEQEFKASQACAKKD 1356 GVVSFALYLL PVV GDLFLVFEFSHYVIFFIAIFTVLQLV+LGASTYPIKRRWD AAYKSK+ELLEGYRAMI RT + SIPMFGLGRVSLD+FHWG NW+ DAV YH+ARSVFIRQH ++ANFDFARYAC+VTDRQILGMAN+SL SWLALLVFRWV Y Q + D TVS+ AWFVFG+VLCLLELSLLF C LGVRRVCIKLGADP+DP+KT+DAVLERIWVAP+TH+QHAASMH ++ P A++E + P ++ V A A A +HGSEG GGL++GG A + + M +G IP ITMRDAF+L GKAY +A++ILMLLNSYYLAF+ VYFISRA+KS TEWVWIIVLPLPIL GVLMAYRRVLPLIALLSTIVM+Q TDVADVEQEAEELN++RRK+VMRVEDVLEQEFKAS ++D Sbjct: 129 GVVSFALYLLHPVVEEGDLFLVFEFSHYVIFFIAIFTVLQLVMLGASTYPIKRRWDIAAYKSKEELLEGYRAMIARTHKWSIPMFGLGRVSLDVFHWGSNWKWTDAVQYHLARSVFIRQHRQNANFDFARYACMVTDRQILGMANVSLVSWLALLVFRWVSYGLQVGLSRDGGTVSFRAWFVFGIVLCLLELSLLFACMLGVRRVCIKLGADPQDPVKTVDAVLERIWVAPMTHVQHAASMHGIVRP----ALDEGATADTPRNSCAVDADQA--------------AVVHGSEGSGGLEAGGSAVRS-TMPDFAVEMPVRGANIPEITMRDAFVLPIGKAYKQAIEILMLLNSYYLAFYAVYFISRASKSDTEWVWIIVLPLPILAGVLMAYRRVLPLIALLSTIVMMQPTDVADVEQEAEELNKLRRKLVMRVEDVLEQEFKASLRRERRD 562 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig937.18370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig937.18370.1 >prot_L-elsbetiae_contig937.18370.1 ID=prot_L-elsbetiae_contig937.18370.1|Name=mRNA_L-elsbetiae_contig937.18370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=524bp MILRTRRCSIPMFGLGRVSLDLFHWGVNWRRIDAVHYHIARSVFIRQHGRback to top mRNA from alignment at L-elsbetiae_contig937:13697..20137- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig937.18370.1 ID=mRNA_L-elsbetiae_contig937.18370.1|Name=mRNA_L-elsbetiae_contig937.18370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6441bp|location=Sequence derived from alignment at L-elsbetiae_contig937:13697..20137- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig937:13697..20137- >mRNA_L-elsbetiae_contig937.18370.1 ID=mRNA_L-elsbetiae_contig937.18370.1|Name=mRNA_L-elsbetiae_contig937.18370.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3144bp|location=Sequence derived from alignment at L-elsbetiae_contig937:13697..20137- (Laminarionema elsbetiae ELsaHSoW15)back to top |