mRNA_L-elsbetiae_contig9367.18364.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9367.18364.1
Unique NamemRNA_L-elsbetiae_contig9367.18364.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9367.18364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9367contigL-elsbetiae_contig9367:1633..3817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1802
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9367.18364.1prot_L-elsbetiae_contig9367.18364.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9367 3272..3589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817006.1247933-UTR-L-elsbetiae_contig9367:1632..27931622817006.1247933-UTR-L-elsbetiae_contig9367:1632..2793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9367 1633..2793 -
1691683977.4199767-UTR-L-elsbetiae_contig9367:1632..27931691683977.4199767-UTR-L-elsbetiae_contig9367:1632..2793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9367 1633..2793 -
1622817006.1391084-UTR-L-elsbetiae_contig9367:3176..32711622817006.1391084-UTR-L-elsbetiae_contig9367:3176..3271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9367 3177..3271 -
1691683977.4327466-UTR-L-elsbetiae_contig9367:3176..32711691683977.4327466-UTR-L-elsbetiae_contig9367:3176..3271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9367 3177..3271 -
1622817006.165596-UTR-L-elsbetiae_contig9367:3589..38171622817006.165596-UTR-L-elsbetiae_contig9367:3589..3817Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9367 3590..3817 -
1691683977.4574456-UTR-L-elsbetiae_contig9367:3589..38171691683977.4574456-UTR-L-elsbetiae_contig9367:3589..3817Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9367 3590..3817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817006.1515856-CDS-L-elsbetiae_contig9367:3271..35891622817006.1515856-CDS-L-elsbetiae_contig9367:3271..3589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9367 3272..3589 -
1691683977.4476006-CDS-L-elsbetiae_contig9367:3271..35891691683977.4476006-CDS-L-elsbetiae_contig9367:3271..3589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9367 3272..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9367.18364.1

>prot_L-elsbetiae_contig9367.18364.1 ID=prot_L-elsbetiae_contig9367.18364.1|Name=mRNA_L-elsbetiae_contig9367.18364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MCTCHGNCSPRVARVLVDAGASASSPHPKDVSGGWALLRRRPPGAHTPHA
ASARRRSSGKAPWGNSGTGWRASAACLCGWRQRMLFLGCSKAMPLLTCLL
QMMQL*
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mRNA from alignment at L-elsbetiae_contig9367:1633..3817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9367.18364.1 ID=mRNA_L-elsbetiae_contig9367.18364.1|Name=mRNA_L-elsbetiae_contig9367.18364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2185bp|location=Sequence derived from alignment at L-elsbetiae_contig9367:1633..3817- (Laminarionema elsbetiae ELsaHSoW15)
GGGCTCTTTATCAGGCCACACAGGGGGCGACACGTACATAGACATCATAG
CAATGCTGGCTAACGCCAGGGTGGTGGACACGGGTGACGCTCTGGTGCAA
GCCGCATCTCTCGATGGCTAGTGTTCCGCGAAGTTCCGTCTGCAGCAACG
CCAGGAAAACAACACCATCGATCTACTATGTAGCTTCGTAAGTCAACACC
TGCGACGCGTTGGGTGCAACGCCTTTTGATGTGCACCTGTCATGGCAACT
GCTCTCCGAGGGTGGCGCGGGTGCTCGTCGACGCCGGAGCAAGCGCATCA
TCGCCCCATCCGAAGGATGTATCCGGAGGGTGGGCTTTACTTCGAAGGCG
CCCTCCCGGAGCTCACACACCGCACGCAGCCTCCGCGAGAAGAAGGTCTT
CGGGGAAGGCGCCATGGGGGAACAGCGGAACGGGCTGGAGGGCATCCGCC
GCTTGCTTGTGCGGGTGGAGGCAGCGCATGCTGTTTCTTGGCTGTAGCAA
AGCGATGCCCCTGTTGACGTGCCTTCTGCAGATGATGCAGCTATGACGGA
CCAAGATGTCCTCAACGCCGGTGAGGACGACGCTGCCGATGTTAAGCCGA
AGGGCCACAAGACGTGGCGCGTTCTTGGACCCTCTGTTCAGGTGCGAATG
TTTGACACGATGTCGATGTTTTGAGACCCAGTGTTTTGGGCGAGGATGGG
GTTCCTATACTCAAACACGGAGTACCCCATCACGGTTCAAAATGTCCGTG
CTTTCTCTCTCTTGGCGTATTTTTAAACAGACGATCACATACATACCTTG
CGCCTTGCTCGAAGCTTTCGCAGTTTCTCTTGAGAAGTTGGGCATGCCAC
GAAATAGGCGGTGTATGCCCACTACCTGCCTACCGGTCGCTCCCTGTATT
TGCTGCTTTTCTGTGGGAGTAATTCGTGCCTTTTTTACAAAATCCAGCGC
TCATGCCACCAAGCCCACCAAGCCCACCGACGATTGTGCCGTTCTGCCAC
TCCCACCCCTACACGAATTTCAAGGCGCTCGGTGAAAAGCCTTGACCGAA
ACCAGGCCGCGCGATGCGGAGAGCAACTCCTTTTGGCCTTCCTGTTCCCC
TGACAGATGGAGTGGCGCCTTTCACCGCAGCCGTGCCAGCAGCAGCGCGG
CCGGCCACGTTTCCATCGGAGGGGGCGGCTCTTGGTGAACGAGCTTGTTT
TTCGTTGTGCTGTGTGTGTTGGGTCCGTGGGCACTACCTTGTGCGACACA
AGCTGCCCCCGTGAACCGCTTGTTTTGACGCGGAGGTTCCTTTTTCTGGA
AGTTCTAAACAGCCAAAACCGTTGCCCTTGCTTTTGTTCGCCCCCGAAAA
TGTGGAGCTAGGCGGTTCGGTTCTTCGTAGGGCGTTGTCTTAAGAGCAGC
TGTGAAGATGGGTTATTTATGCTTGAGTACAAAAAGGATAAAAGACTGGC
AGAGAAGAAGATGTCTGCGTTTATGTGAGGCGGGCCATGCATTGGACGCC
TCAGGATGTTTGTTGCGTGTTGCCACTTGTCTAGGAAGTCGGAAAAAAGC
TGCGAAATTAACTATTGTACGAATTCTGGAACTTAATGTTCGCGTACAAT
TTAGAGCAGGCTTGCCTGCCTGTGAGAGAGAGAAGTGCGTGTGGTCGAGG
GGTGGGCTCGTGTGCACGGAGAATTGATGTCTGGTGATATCAAGGTTACG
GTTTCGGCGAAGGAGTGCGCTTTCGGTCCGTATTTTATCGTTTCGCGTAT
ATGTACATCTGCGTACATATGTAGCACAGCACTGCGTGAGCTTTAAAATT
GGGGGTCAGGATTTGGAGAGGTGCTCCTTGCTGCCGGAGGGCAGTTCATC
GTGCGGACCGTCGTACATACGTAGAAGATTTGGTGTACAGGAGAGTGGAA
GTGGTGATGTCGGTCTGCCTACTATGTGCTGCCTCTGGACAGACGTCCGC
CGAGCTCAGCGAATCCGATTTTGATTGTCGCTTGTCGCCTTGCCGCGCGA
ATTTCCTGAGTAAAAGCGCACGACGGGGAACGCAAAACGATCTCTTGTGT
CAGATAGTCGTCTACAGTAGTAGTAGCACCGGCCCGCTAGTAAGAGAGCT
CCGAGTAAGAAACTTAAGCCTGAGATGTTCAATTTATTAAGAAAGTGTCC
AGCCTGGGCGGGCGGCGAGTGCCTCACTAAATCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9367:1633..3817-

>mRNA_L-elsbetiae_contig9367.18364.1 ID=mRNA_L-elsbetiae_contig9367.18364.1|Name=mRNA_L-elsbetiae_contig9367.18364.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig9367:1633..3817- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCACCTGTCATGGCAACTGCTCTCCGAGGGTGGCGCGGGTGCTCGT
CGACGCCGGAGCAAGCGCATCATCGCCCCATCCGAAGGATGTATCCGGAG
GGTGGGCTTTACTTCGAAGGCGCCCTCCCGGAGCTCACACACCGCACGCA
GCCTCCGCGAGAAGAAGGTCTTCGGGGAAGGCGCCATGGGGGAACAGCGG
AACGGGCTGGAGGGCATCCGCCGCTTGCTTGTGCGGGTGGAGGCAGCGCA
TGCTGTTTCTTGGCTGTAGCAAAGCGATGCCCCTGTTGACGTGCCTTCTG
CAGATGATGCAGCTATGAATGTGCACCTGTCATGGCAACTGCTCTCCGAG
GGTGGCGCGGGTGCTCGTCGACGCCGGAGCAAGCGCATCATCGCCCCATC
CGAAGGATGTATCCGGAGGGTGGGCTTTACTTCGAAGGCGCCCTCCCGGA
GCTCACACACCGCACGCAGCCTCCGCGAGAAGAAGGTCTTCGGGGAAGGC
GCCATGGGGGAACAGCGGAACGGGCTGGAGGGCATCCGCCGCTTGCTTGT
GCGGGTGGAGGCAGCGCATGCTGTTTCTTGGCTGTAGCAAAGCGATGCCC
CTGTTGACGTGCCTTCTGCAGATGATGCAGCTATGA
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