mRNA_L-elsbetiae_contig9357.18352.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9357.18352.1 vs. uniprot
Match: D8LE89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE89_ECTSI) HSP 1 Score: 307 bits (786), Expect = 2.100e-97 Identity = 233/395 (58.99%), Postives = 259/395 (65.57%), Query Frame = 2 Query: 179 WMDDMISKGFLRPRFLPPHAGGAPATRHVGSPIETIHTASAAEVVLGGSHPXXXXXXXAPAQQLVQETGSPGN-WLQGPLRECARNAGDDGVLARSLLDAGAATDAVDRAGRSPLHWACTRGNTAVAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYGFAPRGSPAPLAPXXXXXXXXXXXXXXXXXXXRRPDESGV-SIVDARNAYGSTALHRAAFNGRDGVVLALLTGGAGVSIVGNSGRSALHLACRNAHPACAGILLAWGADESARAKDGSTPWSELAQAAEIRPPGCPRVAETARLLNTARGSRAWGRRGWLLVLKDRHSRRVARQMAGAERGTEMMLEGEGGGEAGWGPGVTAAVSRGLVGRLLAVGEEGCFRLVVGFL 1357 W +DMISKGF++ R LP H GG PA H GSPIE+I AA XXXXX VQETG+ WLQ PLR+CARNA DDG LARSLLDAGA T+ D GRSPLHWACTRGNTAV +AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YGFAP G P P P ++GV SIVDARN YGSTALHRAAFNGR+GVVLALL GGA V +VGNSGR ESA AKDGSTPWS+LA AAE RP GCPRVA+TA LLNTARG+RAW RRGWLL+L+D+H+R V A + L+G GG + G +R LV +L+ +GEEGCFRLVVGFL Sbjct: 13 WFNDMISKGFVKQRHLPQHTGGPPAAGHAGSPIESILNPDAANENRSPDSDQAXXXXXXXXXXQVQETGAASRTWLQSPLRDCARNADDDGALARSLLDAGAPTNFFDSTGRSPLHWACTRGNTAVVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPPGNVPASLVAPALEAEELSWPMAAPMPQQNGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRXXXXXXXXXXXXXXXXXXXXXXXXESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDKHNRGVFEAEA-------IDLDGRGGACSDMEDGQGEDFAR-LVNQLVGIGEEGCFRLVVGFL 399
BLAST of mRNA_L-elsbetiae_contig9357.18352.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.420e-6 Identity = 47/129 (36.43%), Postives = 62/129 (48.06%), Query Frame = 2 Query: 803 VDARNAYGSTALHRAAFNGRDGVVLALLTGGAGVSIVGNSGRSALHLACRNAHPACAGILLAWGADESARAKDGSTP------WSELAQAAEIRPPGCPRVAETARLLNTARGSRAWGRRGWLLVLKDR 1171 + R+ T L AA+ G + LL GA V G RSALH AC H AC LL GADE+ +DG++P SE + AE + +L A RAW RRGWL++L++R Sbjct: 62 TEVRDRNNDTPLLLAAWLGHATAIAKLLASGARVDADGIP-RSALHCACMQGHAACVSELLRGGADETVEDEDGNSPAQVIGTMSESLERAED-------IVLIREMLRRAPADRAWRRRGWLVMLRNR 182 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9357.18352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9357.18352.1 >prot_L-elsbetiae_contig9357.18352.1 ID=prot_L-elsbetiae_contig9357.18352.1|Name=mRNA_L-elsbetiae_contig9357.18352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=407bp MLDSTNRMEAASPWMDDMISKGFLRPRFLPPHAGGAPATRHVGSPIETIHback to top mRNA from alignment at L-elsbetiae_contig9357:1666..6118- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9357.18352.1 ID=mRNA_L-elsbetiae_contig9357.18352.1|Name=mRNA_L-elsbetiae_contig9357.18352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4453bp|location=Sequence derived from alignment at L-elsbetiae_contig9357:1666..6118- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9357:1666..6118- >mRNA_L-elsbetiae_contig9357.18352.1 ID=mRNA_L-elsbetiae_contig9357.18352.1|Name=mRNA_L-elsbetiae_contig9357.18352.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2442bp|location=Sequence derived from alignment at L-elsbetiae_contig9357:1666..6118- (Laminarionema elsbetiae ELsaHSoW15)back to top |