mRNA_L-elsbetiae_contig9356.18350.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9356.18350.1
Unique NamemRNA_L-elsbetiae_contig9356.18350.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: A0A6H5K341_9PHAE (Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K341_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.040e-19
Identity = 50/62 (80.65%), Postives = 53/62 (85.48%), Query Frame = 2 
Query:   38 GGVAEGLLAEITGGXXXXXXSVPMPLDPTVQITGLEPGSAFLFKSALYPCVIEFTVRRDANS 223
            GGVAE L+AE     XXXX SVPMPLDPTVQITGLEP +AFLFKSALYPCVIEFTV+RDA S
Sbjct:  370 GGVAEALMAEFGAASXXXXGSVPMPLDPTVQITGLEPSTAFLFKSALYPCVIEFTVKRDATS 431
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: D7FHY6_ECTSI (Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY6_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.630e-19
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 2 
Query:   41 GVAEGLLAEITGGXXXXXXSVPMPLDPTVQITGLEPGSAFLFKSALYPCVIEFTVRRDANS 223
            GVAE L+AE    XXXXXXSVPMPLDPTVQITGLEP +AFLFKSALYPCVIEFTV+RDA S
Sbjct:  601 GVAEALMAEFGAXXXXXXXSVPMPLDPTVQITGLEPSTAFLFKSALYPCVIEFTVKRDATS 661
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: A0A836CGT8_9STRA (Phosphatidylinositol 3-kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.770e-10
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 2 
Query:   50 EGLLAEITGGXXXXXXSVPMPLDPTVQITGLEPGSAFLFKSALYPCVIEFTVRRD 214
            E  LA +         ++PMPLDP VQ+TGL P SAF+F+SALYPCV+EF V  D
Sbjct:  286 EPQLARVGAYLRRDGAALPMPLDPGVQVTGLNPQSAFMFRSALYPCVVEFIVGED 340
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: A0A7S4D7N0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7N0_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 7.660e-7
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 2 
Query:   98 SVPMPLDPTVQITGLEPGSAFLFKSALYPCVIEF 199
            SVP+PLDPT+Q+T + P S F+FKS LYP V+EF
Sbjct:  121 SVPLPLDPTIQVTEVAPESGFMFKSVLYPAVVEF 154
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: A0A4D9D931_9STRA (Phosphatidylinositol 3-kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D931_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.320e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 2 
Query:   56 LLAEI-TGGXXXXXXSVPMPLDPTVQITGLEPGSAFLFKSALYPCVIEFTVRRD 214
            LLAE    G       VPMPLDP V++ G+   +AF+F+SALYP VI+F +  D
Sbjct:  628 LLAEADANGLPKGAPYVPMPLDPHVKVAGVVASTAFMFRSALYPAVIQFRLYDD 681
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: K0SR36_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SR36_THAOC)

HSP 1 Score: 49.3 bits (116), Expect = 5.990e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:  101 VPMPLDPTVQITGLEPGSAFLFKSALYPCVIEFTVRRD 214
            VP+P DP V + G++PGS  +FKSALYP V++F V  D
Sbjct:  153 VPLPSDPRVWVRGVDPGSIRMFKSALYPAVLDFVVDED 190
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BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Match: A0A1V9ZTX1_9STRA (Phosphatidylinositol 3-kinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTX1_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 8.470e-5
Identity = 18/34 (52.94%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:  101 VPMPLDPTVQITGLEPGSAFLFKSALYPCVIEFT 202
            + +PLDP++ ++G+ P SA +FKSA+YPCV++FT
Sbjct:  580 IRLPLDPSIHLSGIVPTSAKMFKSAMYPCVVDFT 613
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9356.18350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K341_9PHAE1.040e-1980.65Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus s... [more]
D7FHY6_ECTSI3.630e-1983.61Phosphatidylinositol 3-kinase n=1 Tax=Ectocarpus s... [more]
A0A836CGT8_9STRA5.770e-1054.55Phosphatidylinositol 3-kinase n=1 Tax=Tribonema mi... [more]
A0A7S4D7N0_HETAK7.660e-764.71Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D931_9STRA3.320e-548.15Phosphatidylinositol 3-kinase n=2 Tax=Monodopsidac... [more]
K0SR36_THAOC5.990e-555.26Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A1V9ZTX1_9STRA8.470e-552.94Phosphatidylinositol 3-kinase n=1 Tax=Achlya hypog... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9356contigL-elsbetiae_contig9356:323..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817004.7766352-CDS-L-elsbetiae_contig9356:322..4521622817004.7766352-CDS-L-elsbetiae_contig9356:322..452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9356 323..452 +
1691683976.4651446-CDS-L-elsbetiae_contig9356:322..4521691683976.4651446-CDS-L-elsbetiae_contig9356:322..452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9356 323..452 +
1622817004.790209-CDS-L-elsbetiae_contig9356:786..8931622817004.790209-CDS-L-elsbetiae_contig9356:786..893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9356 787..893 +
1691683976.4780471-CDS-L-elsbetiae_contig9356:786..8931691683976.4780471-CDS-L-elsbetiae_contig9356:786..893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9356 787..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9356.18350.1prot_L-elsbetiae_contig9356.18350.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9356 323..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9356.18350.1

>prot_L-elsbetiae_contig9356.18350.1 ID=prot_L-elsbetiae_contig9356.18350.1|Name=mRNA_L-elsbetiae_contig9356.18350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
RRWWRWPRHGRSRGGSGGVVGGDHRRRRRWEWKRADAAGPDRADHRAGAG
LRLPLQERPLPLRHRVHGQARRQQRRHS*
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mRNA from alignment at L-elsbetiae_contig9356:323..893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9356.18350.1 ID=mRNA_L-elsbetiae_contig9356.18350.1|Name=mRNA_L-elsbetiae_contig9356.18350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=571bp|location=Sequence derived from alignment at L-elsbetiae_contig9356:323..893+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGTGGTGGCGGTGGCCTCGGCACGGGAGGAGTAGGGGGGGTAGCGG
AGGGGTTGTTGGCGGAGATCACCGGCGGCGGCGGCGGTGGGAGTGGAAGC
GTGCCGATGCCGCTGGACCCGACCGTGCAGGTGCTATTTACATATACATA
TTCGGTTGATCGATATGGAGCTGGAGGAATTGTTGAGTTTTGAGCGCTCG
ACTCATGGTTGATCGCATTTGGTTTCGTTCCACTTTCCGCTCCAAACTGA
AATTCAGAGGCAGGGTGTTCGCTCGCTCGCGTGCGCGCTTTGTTCGCGCG
TTCGTGAAGTCGGCGTTCGTATGCGCCCTGCCCTCTGTGCGTGCGTGCGT
GCGTGCGTGTGCGTGGGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGCCC
GGCTTCTCTGCTTGACGGACGGACCGGGCCGCTGCTGGTGGGGTGCTTTT
CTCGTCGAACGCAGATCACCGGGCTGGAGCCGGGCTCCGCCTTCCTCTTC
AAGAGCGCCCTTTACCCTTGCGTCATCGAGTTCACGGTCAGGCGAGACGC
CAACAGCGGCGGCACAGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9356:323..893+

>mRNA_L-elsbetiae_contig9356.18350.1 ID=mRNA_L-elsbetiae_contig9356.18350.1|Name=mRNA_L-elsbetiae_contig9356.18350.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig9356:323..893+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGTGGTGGCGGTGGCCTCGGCACGGGAGGAGTAGGGGGGGTAGCGG
AGGGGTTGTTGGCGGAGATCACCGGCGGCGGCGGCGGTGGGAGTGGAAGC
GTGCCGATGCCGCTGGACCCGACCGTGCAGCGGCGGTGGTGGCGGTGGCC
TCGGCACGGGAGGAGTAGGGGGGGTAGCGGAGGGGTTGTTGGCGGAGATC
ACCGGCGGCGGCGGCGGTGGGAGTGGAAGCGTGCCGATGCCGCTGGACCC
GACCGTGCAGATCACCGGGCTGGAGCCGGGCTCCGCCTTCCTCTTCAAGA
GCGCCCTTTACCCTTGCGTCATCGAGTTCACGGTCAGGCGAGACGCCAAC
AGCGGCGGCACAGCTAAATCACCGGGCTGGAGCCGGGCTCCGCCTTCCTC
TTCAAGAGCGCCCTTTACCCTTGCGTCATCGAGTTCACGGTCAGGCGAGA
CGCCAACAGCGGCGGCACAGCTAA
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