mRNA_L-elsbetiae_contig9330.18330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9330.18330.1
Unique NamemRNA_L-elsbetiae_contig9330.18330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9330.18330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9330contigL-elsbetiae_contig9330:319..1272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817002.9049926-CDS-L-elsbetiae_contig9330:318..4051622817002.9049926-CDS-L-elsbetiae_contig9330:318..405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9330 319..405 -
1691683975.130121-CDS-L-elsbetiae_contig9330:318..4051691683975.130121-CDS-L-elsbetiae_contig9330:318..405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9330 319..405 -
1622817002.9171445-CDS-L-elsbetiae_contig9330:996..12721622817002.9171445-CDS-L-elsbetiae_contig9330:996..1272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9330 997..1272 -
1691683975.1397967-CDS-L-elsbetiae_contig9330:996..12721691683975.1397967-CDS-L-elsbetiae_contig9330:996..1272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9330 997..1272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9330.18330.1prot_L-elsbetiae_contig9330.18330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9330 319..1272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9330.18330.1

>prot_L-elsbetiae_contig9330.18330.1 ID=prot_L-elsbetiae_contig9330.18330.1|Name=mRNA_L-elsbetiae_contig9330.18330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
RGAAEQVTRLANHPAARVPRASTPGAPRSCYNSVLARFKRKTSDISAAAS
VRGGRPAKHEPPARPSAIDRSSEGPSISAHLSDVGPRATPQVLGWNGVTD
TVRASYGAEAERAARLPADK*
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mRNA from alignment at L-elsbetiae_contig9330:319..1272-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9330.18330.1 ID=mRNA_L-elsbetiae_contig9330.18330.1|Name=mRNA_L-elsbetiae_contig9330.18330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=954bp|location=Sequence derived from alignment at L-elsbetiae_contig9330:319..1272- (Laminarionema elsbetiae ELsaHSoW15)
AGGGGTGCGGCGGAACAAGTCACCCGACTGGCCAACCACCCGGCTGCCAG
GGTGCCCCGCGCTTCAACGCCCGGTGCACCCCGTAGCTGTTACAACAGCG
TGTTGGCCCGCTTCAAAAGAAAAACGAGCGACATCTCCGCTGCCGCAAGC
GTGCGCGGAGGGAGACCAGCGAAACACGAACCCCCCGCGCGACCTTCAGC
TATCGATCGCAGCAGCGAAGGCCCATCGATTTCGGCGCACCTCTCTGACG
TCGGGCCCCGGGCAACGCCACAAGTGGTGCGTCCCGCGGTCCCGCGAGGT
CAATAATCCCCCCCCACACACACACACACACACACTTTTTTGCCTCTTGC
ACACTTCATTGTTGACGAGGGTGGGGAGTGCTGAACCCTGCTCGCGATAA
AAACCTCACAGGCAGGCACCGCAGGAGGGGGTCTACCCCCCCCCCCCCCC
CCCCCCCTTGTGGCCCCCGGTGGGGCCGCCGGCCTCGCCTCGGGGGGGGA
GGGGGCCCGTGGGGGCGACCGACAAAAAACCNNNNNNNNNNCTTTGTGGT
CGGTGGGTGCGAATACAGAACGCTCGCCATCACAACCAGCACCCGGGCCG
GCGCAGGAGGAGGGGGGACCCCCCCCCCCCCCCCCCCCCCTTCTGTGTGA
CCCCGGTTGGGTCGTCTGGCTAGTCGTAGTGGGGGAAGGGGGCCAGTGGG
GCAGACGACGAATAAGCCAATAACGGGAGGAAAAAAGAAAAAAGAACTAC
ATTGCCTCTTCATACCGCCCCCCCCCCCTTCCCCCCCGTGCATTTGCCCG
CCGCTTTGTTTGTTTCGCCGACTATGTACGACCTATTACCATGCGGGCCT
GCCTGCACGTACCGCAGTTGGGGTGGAACGGAGTGACCGATACGGTGCGG
GCTTCGTATGGCGCGGAAGCCGAACGAGCCGCACGATTACCGGCTGATAA
ATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9330:319..1272-

>mRNA_L-elsbetiae_contig9330.18330.1 ID=mRNA_L-elsbetiae_contig9330.18330.1|Name=mRNA_L-elsbetiae_contig9330.18330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig9330:319..1272- (Laminarionema elsbetiae ELsaHSoW15)
AGGGGTGCGGCGGAACAAGTCACCCGACTGGCCAACCACCCGGCTGCCAG
GGTGCCCCGCGCTTCAACGCCCGGTGCACCCCGTAGCTGTTACAACAGCG
TGTTGGCCCGCTTCAAAAGAAAAACGAGCGACATCTCCGCTGCCGCAAGC
GTGCGCGGAGGGAGACCAGCGAAACACGAACCCCCCGCGCGACCTTCAGC
TATCGATCGCAGCAGCGAAGGCCCATCGATTTCGGCGCACCTCTCTGACG
TCGGGCCCCGGGCAACGCCACAAGTGAGGGGTGCGGCGGAACAAGTCACC
CGACTGGCCAACCACCCGGCTGCCAGGGTGCCCCGCGCTTCAACGCCCGG
TGCACCCCGTAGCTGTTACAACAGCGTGTTGGCCCGCTTCAAAAGAAAAA
CGAGCGACATCTCCGCTGCCGCAAGCGTGCGCGGAGGGAGACCAGCGAAA
CACGAACCCCCCGCGCGACCTTCAGCTATCGATCGCAGCAGCGAAGGCCC
ATCGATTTCGGCGCACCTCTCTGACGTCGGGCCCCGGGCAACGCCACAAG
TGTTGGGGTGGAACGGAGTGACCGATACGGTGCGGGCTTCGTATGGCGCG
GAAGCCGAACGAGCCGCACGATTACCGGCTGATAAATGATTGGGGTGGAA
CGGAGTGACCGATACGGTGCGGGCTTCGTATGGCGCGGAAGCCGAACGAG
CCGCACGATTACCGGCTGATAAATGA
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