mRNA_L-elsbetiae_contig9314.18319.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9314.18319.1
Unique NamemRNA_L-elsbetiae_contig9314.18319.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9314.18319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9314contigL-elsbetiae_contig9314:7485..7852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817001.54255-CDS-L-elsbetiae_contig9314:7484..75721622817001.54255-CDS-L-elsbetiae_contig9314:7484..7572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 7485..7572 -
1691683974.095179-CDS-L-elsbetiae_contig9314:7484..75721691683974.095179-CDS-L-elsbetiae_contig9314:7484..7572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 7485..7572 -
1622817001.5543964-CDS-L-elsbetiae_contig9314:7754..78521622817001.5543964-CDS-L-elsbetiae_contig9314:7754..7852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 7755..7852 -
1691683974.1049066-CDS-L-elsbetiae_contig9314:7754..78521691683974.1049066-CDS-L-elsbetiae_contig9314:7754..7852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9314 7755..7852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9314.18319.1prot_L-elsbetiae_contig9314.18319.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9314 7485..7852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9314.18319.1

>prot_L-elsbetiae_contig9314.18319.1 ID=prot_L-elsbetiae_contig9314.18319.1|Name=mRNA_L-elsbetiae_contig9314.18319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
RNAAAVAAGRARKKGKTGDAVPSPAVGGGNVVSDAPELPSAAKKKIAARK
VARRIKAASTR*
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mRNA from alignment at L-elsbetiae_contig9314:7485..7852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9314.18319.1 ID=mRNA_L-elsbetiae_contig9314.18319.1|Name=mRNA_L-elsbetiae_contig9314.18319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=368bp|location=Sequence derived from alignment at L-elsbetiae_contig9314:7485..7852- (Laminarionema elsbetiae ELsaHSoW15)
CGCAACGCGGCCGCTGTTGCGGCAGGTCGCGCGCGCAAGAAAGGGAAAAC
AGGCGATGCCGTGCCCAGTCCGGCTGTTGGCGGTGGAAACGTCGTCAGGT
GAGCGAGGTACTCAGAGCATGGTTAGCAGAGCATGCTAGCGCTGTACGCC
TCTCGGTCCACATACTCCTATTAATATGCAGTGTATGTAGTCGCTGCTCA
GCCTATCTACTATGTATATATAGACTACAGATGAAGAAGCTGCATTTCGG
TTCTCTCTCACCAAACTCACCGACCAGCAGCGACGCACCAGAGCTTCCTA
GCGCAGCCAAGAAGAAGATTGCCGCTCGCAAGGTTGCACGGCGCATCAAG
GCAGCCTCAACACGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9314:7485..7852-

>mRNA_L-elsbetiae_contig9314.18319.1 ID=mRNA_L-elsbetiae_contig9314.18319.1|Name=mRNA_L-elsbetiae_contig9314.18319.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig9314:7485..7852- (Laminarionema elsbetiae ELsaHSoW15)
CGCAACGCGGCCGCTGTTGCGGCAGGTCGCGCGCGCAAGAAAGGGAAAAC
AGGCGATGCCGTGCCCAGTCCGGCTGTTGGCGGTGGAAACGTCGTCAGCG
CAACGCGGCCGCTGTTGCGGCAGGTCGCGCGCGCAAGAAAGGGAAAACAG
GCGATGCCGTGCCCAGTCCGGCTGTTGGCGGTGGAAACGTCGTCAGCGAC
GCACCAGAGCTTCCTAGCGCAGCCAAGAAGAAGATTGCCGCTCGCAAGGT
TGCACGGCGCATCAAGGCAGCCTCAACACGGTGACGACGCACCAGAGCTT
CCTAGCGCAGCCAAGAAGAAGATTGCCGCTCGCAAGGTTGCACGGCGCAT
CAAGGCAGCCTCAACACGGTGA
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