mRNA_L-elsbetiae_contig9301.18304.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9301.18304.1
Unique NamemRNA_L-elsbetiae_contig9301.18304.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9301.18304.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.670e-26
Identity = 110/198 (55.56%), Postives = 133/198 (67.17%), Query Frame = 1 
Query:  346 ADPEEVIAALKRALEGREEDLNTVKKASEQLDKEVRSIAEASMEALERENNAKEALGMNSSGSGRNSFNASG---------KSNIQDXXXXXXXXXXXXXXXXLVGXXXXXXXXXXXXXXXADEEHSAASGSADAVSDRLKPMKRAVESKVSRVAELERIRDELLARVGEATLREKGAGERLAALEEEIADAKAAASD 912
            A+PEEV++A+++ALEGR+EDL+  K A  Q+DKE+ S+AEASMEALERENNAKEALGM+ + +  N     G         +   ++          XXXXXX   XXXXXXXXXXXXXXX       A  +A  V DRL  MKRA+E KVSRV ELER RDEL AR+ EA  RE+GAGER + LEEEIADAK  A+D
Sbjct:  117 ANPEEVVSAMRKALEGRQEDLDNTKAACAQMDKEIESLAEASMEALERENNAKEALGMHPTATAYNDDGTGGVGLDDDEEGEDGREERMMVQGRSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVATAG-VRDRLSSMKRALERKVSRVEELERRRDELTARLKEANAREEGAGERASKLEEEIADAKTTAAD 313
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BLAST of mRNA_L-elsbetiae_contig9301.18304.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 8.380e-12
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:  346 ADPEEVIAALKRALEGREEDLNTVKKASEQLDKEVRSIAEASMEALERENNAKEALGMNSSGSGRN 543
            A+PEEV++A+ +ALEGR+ DL T K A  Q+DKE+ S+AEASMEALERENNAKEALGM+ + +  N
Sbjct:  586 ANPEEVVSAMGKALEGRQGDLYTTKAACAQMDKEIGSLAEASMEALERENNAKEALGMHPAATAHN 651
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9301.18304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDH3_9PHAE1.670e-2655.56SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQC9_ECTSI8.380e-1263.64SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9301contigL-elsbetiae_contig9301:4293..7167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size918
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9301.18304.1prot_L-elsbetiae_contig9301.18304.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9301 4436..6063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.4754062-UTR-L-elsbetiae_contig9301:4292..44351622817000.4754062-UTR-L-elsbetiae_contig9301:4292..4435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9301 4293..4435 +
1691683973.3456612-UTR-L-elsbetiae_contig9301:4292..44351691683973.3456612-UTR-L-elsbetiae_contig9301:4292..4435Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9301 4293..4435 +
1622817000.5135858-UTR-L-elsbetiae_contig9301:6063..62261622817000.5135858-UTR-L-elsbetiae_contig9301:6063..6226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9301 6064..6226 +
1691683973.3847198-UTR-L-elsbetiae_contig9301:6063..62261691683973.3847198-UTR-L-elsbetiae_contig9301:6063..6226Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9301 6064..6226 +
1622817000.5271518-UTR-L-elsbetiae_contig9301:7017..71671622817000.5271518-UTR-L-elsbetiae_contig9301:7017..7167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9301 7018..7167 +
1691683973.3997035-UTR-L-elsbetiae_contig9301:7017..71671691683973.3997035-UTR-L-elsbetiae_contig9301:7017..7167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9301 7018..7167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.4869483-CDS-L-elsbetiae_contig9301:4435..47441622817000.4869483-CDS-L-elsbetiae_contig9301:4435..4744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9301 4436..4744 +
1691683973.3562498-CDS-L-elsbetiae_contig9301:4435..47441691683973.3562498-CDS-L-elsbetiae_contig9301:4435..4744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9301 4436..4744 +
1622817000.4999826-CDS-L-elsbetiae_contig9301:5910..60631622817000.4999826-CDS-L-elsbetiae_contig9301:5910..6063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9301 5911..6063 +
1691683973.3699906-CDS-L-elsbetiae_contig9301:5910..60631691683973.3699906-CDS-L-elsbetiae_contig9301:5910..6063Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9301 5911..6063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9301.18304.1

>prot_L-elsbetiae_contig9301.18304.1 ID=prot_L-elsbetiae_contig9301.18304.1|Name=mRNA_L-elsbetiae_contig9301.18304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MHALIAFTPASLFTLSCLLPTDSVWVFFCLGLCTYVSASYETDDVTTTRR
QRVKPCCCCCCCRCCWCSGPGRSDCGFEESVGGQGRRPQHRQEGFRAAGQ
GSSIDRGGEHGSPRAGEQREGGPGDEQQRQRQEQLQRQRQEQHPRRRRRR
RRR*
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mRNA from alignment at L-elsbetiae_contig9301:4293..7167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9301.18304.1 ID=mRNA_L-elsbetiae_contig9301.18304.1|Name=mRNA_L-elsbetiae_contig9301.18304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2875bp|location=Sequence derived from alignment at L-elsbetiae_contig9301:4293..7167+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGCCGCCGTAACTCGAAACAGCACCCACTCTAGTCTGACAAGAGTGAC
ACGAAACTCGGGGAGTACCGGTGGCAAGCTGGTGGCCAACAGCCACGGTG
GTGCCCGCGTGGGGAAGGAGTGCCACCTCAAAAGCGCGTGTGGATGCATG
CGCTGATTGCCTTTACTCCGGCGTCACTATTTACCCTCTCATGCTTACTG
CCAACTGACTCCGTCTGGGTATTTTTCTGCCTGGGTCTATGTACCTATGT
GTCTGCCTCTTACGAAACCGATGACGTCACAACAACACGACGTCAACGAG
TAAAACCTTGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGGTGCAGCGGA
CCCGGAAGAAGTGATTGCGGCTTTGAAGAGAGCGTTGGAGGGCAGGGAAG
AAGACCTCAACACCGTCAAGAAGGCTTCCGAGCAGCTGGACAAGGAAGTT
CGGTATGTAGGCCTGCTGCTTGCTGCTGCTGCTGCTGCTGACGATGATGA
TGATGCTGATGCTGCTGATGATGCCGATGCTGCTGATGCCGTGTAGTGCG
TAGCGGCAGGTGTCTCCCGACAAAGAGTGCGATGCTTATCGACGTTGATG
CCTATCGACGTTGATGTGATGCGACGCGATGTTTGATGGGATGTAATGTA
AATGTTGCTCAGCTCGCCCCGTCGCTGAAATGTATCTAGCGGATGCCATG
GTTTCGCTTCGATTTGACTCTGCGTGTACTTCAAAAAACACGCTACCAGT
AGTATGTAGCAATTTACCACGGGAACACGCCTTCCTCCCCCCCAAAGGGG
GCTCACGGAGTGGAGTGGGGGTTGGATGCTGCCCCCCCCCCCCCCCCCCC
GCCCTTGCATGGATGGTCTTATCGAGGATGGGTTTTTCATGCCGCAATCT
GTAGAAACAACTCCGTCAGGAGGGCAGAACTCCTACAGTATGTATCAGGC
ACGGGGGAGGGGGGTTGTTAACGTCCCCGGATTTCGTGTTACGACACGGG
CCGTATCGATTTTGGGGTGGTGGGTGCGTGCGTCCGATGGTGCATCCTCC
TGTTCCGTTGCCCCCTTTGCTACTTTGCGGCCCCCCGCCCCCTCCCTCCC
CCTACATAGTACGCCCCCCTTATAGTACGCCCGCTCCCTTCCGTTCTTCA
ATATCTGTGCTGTTTGTTTGCTGTTTTACAACCCTTGCAAACGCTTACAC
GAAAGCCTTGTTACAGCAGGTATGTATTTGTTTTAGCTCTTGCCGTCCGT
ACCTTTCGTACCTCAAGCCCCCCCCCCCCCCCCTCCCTCGCTCCCCCGAA
ACCCCCGATGCCGACCTCGACCACCTGGTCGCGTGCAATTTTTTTCTTGT
TTCTCTTCTTCACATTTATTTCCAGTGCTCGATGGGCTCGTTGTCACGAG
GGTATCTCTCCAGAGTACTGAACCGTGGTCACACAGGAGGGTTCCTTTCC
CCGGGGCCCCCACTCCCCCCTTCTGCGGTGCTTGCCTAAGATTTTTGTCG
CGAGAAGGGTCCAGCCGTCCCTTTCCCTCGTCGACGGTGAGGTCGAAGTT
TGTGCAAGGCGTGCGTGCAATGAATTAATGCCCTCTCGACTCTCGACACA
CGGGGTCGCCTGCCGCAGATCGATCGCGGAGGCGAGCATGGAAGCCCTCG
AGCGGGAGAACAACGCGAAGGAGGCCCTGGGGATGAACAGCAGCGGCAGC
GGCAGGAACAGCTTCAACGCCAGCGGCAAGAGCAACATCCAAGACGACGA
CGACGACGTCGACGACGATGATGAAGATGAAGACGAAGACGAACTAGTAG
GAGGAGAAGGAGGAGGAGGTGGCGGAGGAGGAGGAGAACATGAGGCCGCG
GACGAGGAACACAGCGCGGCGTCGGGATCGGCCGACGCCGTGAGCGACCG
CCTGAAGCCAATGAAACGCGCCGTTGAGAGCAAGGTGCGGGGTTGGAAAG
GATCGGGCGCAATGTTTACGCACCTCCGGGCCCCTCCTTCACTCAGTGGT
TCTGGTTCGGTTCTGGTTCCGGTTCTGGTTCCGGTTCCGGTTCCGGTTCC
GGTTCTGACTACAATACTACCATTAGGTCTCTCCTCGGTAGGCGATTTAT
TTTCTTGTTTTTCGGCGATTCCTCAAAATAAAATCGGCGAATTGAAATAA
TTTTATAGGTCATTTATCGGCGACTTTCGGCGATTAAATTGTTGATGTCA
AACCTCGTTTTTCGGCGACATCGGCGATTTGTAATCGAATTCAGCCCCTT
GCATCGAGAAATGCAAAAATAGAGAGCACTTTGCGCGTCCGAAAGCAAAT
AAATTTAGATGGAAATTCCGTGGGCAGTCCTGGGACCAAGCCTAAAAAAT
TATTTTTGGCGCTGATGTGGGGGGGAAATCAGTACATGTGATGTCATGTA
CGCGTTTTTTCCTACATGCGGGGGGTTTTCTAATGCAAAAACGGCGAGAA
AAGGGGATTCACCATGCAATTCGATCAAGGCCCTCGGAAATCGGCGTTTT
TTTCTTTTTTTTCGGCAATCTAAATAATCGCCGAAAATCGGCGATTATTT
TCGTTTTCGGTGCTTTTCGGCGATCACCTACCGAGGAGAGGCCTAACTAC
CATTCTGAGGTGCCTGCCGTCTGAGCCATGCCGCCCCCCCCCCCCCACCC
TTTCCCCCTTCCCATCCATCCTCCCGTCCATGTTCTTGTCTTGGTTCTTG
GTTGGGGGCCCCGCCGCTCCGAAAGGTCTCCCGCGTGGCGGAGCTGGAGC
GAATCCGAGACGAGCTCTTGGCCCGCGTGGGCGAGGCTACCCTGAGGGAA
AAGGGCGCGGGGGAGAGGCTGGCCGCCCTCGAGGAGGAGATTGCGGACGC
CAAGGCCGCGGCGAGTGATTCCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9301:4293..7167+

>mRNA_L-elsbetiae_contig9301.18304.1 ID=mRNA_L-elsbetiae_contig9301.18304.1|Name=mRNA_L-elsbetiae_contig9301.18304.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig9301:4293..7167+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCATGCGCTGATTGCCTTTACTCCGGCGTCACTATTTACCCTCTCATG
CTTACTGCCAACTGACTCCGTCTGGGTATTTTTCTGCCTGGGTCTATGTA
CCTATGTGTCTGCCTCTTACGAAACCGATGACGTCACAACAACACGACGT
CAACGAGTAAAACCTTGTTGTTGTTGTTGTTGTTGTCGTTGTTGTTGGTG
CAGCGGACCCGGAAGAAGTGATTGCGGCTTTGAAGAGAGCGTTGGAGGGC
AGGGAAGAAGACCTCAACACCGTCAAGAAGGCTTCCGAGCAGCTGGACAA
GGAAGTTCGATGCATGCGCTGATTGCCTTTACTCCGGCGTCACTATTTAC
CCTCTCATGCTTACTGCCAACTGACTCCGTCTGGGTATTTTTCTGCCTGG
GTCTATGTACCTATGTGTCTGCCTCTTACGAAACCGATGACGTCACAACA
ACACGACGTCAACGAGTAAAACCTTGTTGTTGTTGTTGTTGTTGTCGTTG
TTGTTGGTGCAGCGGACCCGGAAGAAGTGATTGCGGCTTTGAAGAGAGCG
TTGGAGGGCAGGGAAGAAGACCTCAACACCGTCAAGAAGGCTTCCGAGCA
GCTGGACAAGGAAGTTCGATCGATCGCGGAGGCGAGCATGGAAGCCCTCG
AGCGGGAGAACAACGCGAAGGAGGCCCTGGGGATGAACAGCAGCGGCAGC
GGCAGGAACAGCTTCAACGCCAGCGGCAAGAGCAACATCCAAGACGACGA
CGACGACGTCGACGACGATGAATCGATCGCGGAGGCGAGCATGGAAGCCC
TCGAGCGGGAGAACAACGCGAAGGAGGCCCTGGGGATGAACAGCAGCGGC
AGCGGCAGGAACAGCTTCAACGCCAGCGGCAAGAGCAACATCCAAGACGA
CGACGACGACGTCGACGACGATGA
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