mRNA_L-elsbetiae_contig9300.18303.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9300.18303.1
Unique NamemRNA_L-elsbetiae_contig9300.18303.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9300.18303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9300contigL-elsbetiae_contig9300:4019..4508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.4464831-CDS-L-elsbetiae_contig9300:4018..45071622817000.4464831-CDS-L-elsbetiae_contig9300:4018..4507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9300 4019..4507 +
1691683973.331619-CDS-L-elsbetiae_contig9300:4018..45071691683973.331619-CDS-L-elsbetiae_contig9300:4018..4507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9300 4019..4507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9300.18303.1prot_L-elsbetiae_contig9300.18303.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9300 4019..4507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9300.18303.1

>prot_L-elsbetiae_contig9300.18303.1 ID=prot_L-elsbetiae_contig9300.18303.1|Name=mRNA_L-elsbetiae_contig9300.18303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
QQQQRINKRGHGREIVDARGGVALRFQVGSYIRYHHYESRGGFKGRYTWL
VCPHTRLKVVSMSAECCIAASCAPILPISSTEILGPEMKSRILQWRRSVF
ESWGKSLKTSTRQLGSKLISARWKSMIRRLQNKVVPTKQGKAGGKLREVG
RSVCKRWTRCDLG
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mRNA from alignment at L-elsbetiae_contig9300:4019..4508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9300.18303.1 ID=mRNA_L-elsbetiae_contig9300.18303.1|Name=mRNA_L-elsbetiae_contig9300.18303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=490bp|location=Sequence derived from alignment at L-elsbetiae_contig9300:4019..4508+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCAACAACGAATAAACAAGAGGGGACACGGGCGCGAGATAGTCGA
TGCTCGTGGTGGCGTGGCTCTTCGGTTTCAGGTGGGCTCCTACATACGGT
ACCACCACTATGAATCACGGGGCGGGTTCAAGGGACGCTACACATGGCTT
GTTTGTCCACACACACGCCTCAAGGTAGTTTCAATGAGCGCAGAGTGTTG
TATCGCCGCAAGCTGCGCTCCAATCCTGCCCATCTCTTCGACAGAAATCC
TCGGCCCCGAAATGAAGAGCAGAATATTACAGTGGAGGCGGTCGGTCTTT
GAGAGCTGGGGGAAAAGCCTTAAAACCTCCACTCGGCAGCTCGGAAGCAA
ACTCATCTCGGCGAGGTGGAAAAGTATGATTCGAAGATTGCAAAACAAGG
TCGTCCCTACAAAACAAGGAAAAGCCGGAGGAAAGCTTCGCGAGGTGGGA
CGATCAGTATGTAAGAGGTGGACCAGATGTGATCTTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9300:4019..4508+

>mRNA_L-elsbetiae_contig9300.18303.1 ID=mRNA_L-elsbetiae_contig9300.18303.1|Name=mRNA_L-elsbetiae_contig9300.18303.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig9300:4019..4508+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCAGCAACAACGAATAAACAAGAGGGGACACGGGCGCGAGATAGTCGA
TGCTCGTGGTGGCGTGGCTCTTCGGTTTCAGGTGGGCTCCTACATACGGT
ACCACCACTATGAATCACGGGGCGGGTTCAAGGGACGCTACACATGGCTT
GTTTGTCCACACACACGCCTCAAGGTAGTTTCAATGAGCGCAGAGTGTTG
TATCGCCGCAAGCTGCGCTCCAATCCTGCCCATCTCTTCGACAGAAATCC
TCGGCCCCGAAATGAAGAGCAGAATATTACAGTGGAGGCGGTCGGTCTTT
GAGAGCTGGGGGAAAAGCCTTAAAACCTCCACTCGGCAGCTCGGAAGCAA
ACTCATCTCGGCGAGGTGGAAAAGTATGATTCGAAGATTGCAAAACAAGG
TCGTCCCTACAAAACAAGGAAAAGCCGGAGGAAAGCTTCGCGAGGTGGGA
CGATCAGTATGTAAGAGGTGGACCAGATGTGATCTTGGGCAGCAGCAACA
ACGAATAAACAAGAGGGGACACGGGCGCGAGATAGTCGATGCTCGTGGTG
GCGTGGCTCTTCGGTTTCAGGTGGGCTCCTACATACGGTACCACCACTAT
GAATCACGGGGCGGGTTCAAGGGACGCTACACATGGCTTGTTTGTCCACA
CACACGCCTCAAGGTAGTTTCAATGAGCGCAGAGTGTTGTATCGCCGCAA
GCTGCGCTCCAATCCTGCCCATCTCTTCGACAGAAATCCTCGGCCCCGAA
ATGAAGAGCAGAATATTACAGTGGAGGCGGTCGGTCTTTGAGAGCTGGGG
GAAAAGCCTTAAAACCTCCACTCGGCAGCTCGGAAGCAAACTCATCTCGG
CGAGGTGGAAAAGTATGATTCGAAGATTGCAAAACAAGGTCGTCCCTACA
AAACAAGGAAAAGCCGGAGGAAAGCTTCGCGAGGTGGGACGATCAGTATG
TAAGAGGTGGACCAGATGTGATCTTGGG
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