mRNA_L-elsbetiae_contig930.18302.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig930.18302.1
Unique NamemRNA_L-elsbetiae_contig930.18302.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig930.18302.1 vs. uniprot
Match: D8LTL8_ECTSI (TRUD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTL8_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.100e-8
Identity = 93/263 (35.36%), Postives = 110/263 (41.83%), Query Frame = -3 
Query:    3 MYRERLEKDGVHHLLWPSE--------PGIADSPASAVGVGATADGPSKAPCAPSERRERASAVAVPAVTAVTTSRGPPGTQHFELRNNQERGXXXXXXXXXNGDNVTTAPASAVTPSPSSAALVPRGAYRRLLCVPACVSWEAAAPWNGSATGDA---GGSPAEDSSAPRVCTERASVALVAADSEGGSGXXXXXXXXXXXXXXRNEPGDPPMEGREGERTVSSVNAVLPPVLDDVCLAFTLPPGSFATMFLREVMKTDHDV 758
            MYR+RL++DGV  L+WP+         P + D    A  + A     S+AP                   A   SRG               G           + VT A   AV    +S+ LVPRGAYRRLLCVP   SWEA AP   +   +      S       P   T     A           XXXXXXXXXXXXXX          G    +  S+ +     VL DV L FTLPPGSFATM LREVMK + DV
Sbjct:  769 MYRQRLQEDGVDPLMWPAPTPPFKTHFPRLPDGTTRATAIDAAGLTASQAPL----------------TGAPCLSRG--------------IGGDVGGRDSTAAETVTVATEEAV----ASSTLVPRGAYRRLLCVPVDSSWEAVAPLTKADDPEEVRIKRSSMSGRGQPNGTTPPGDAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAKDRGGADLKAASAND-----VLTDVRLTFTLPPGSFATMCLREVMKRNDDV 992
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig930.18302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTL8_ECTSI6.100e-835.36TRUD domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig930contigL-elsbetiae_contig930:30278..31046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size769
Cds size684
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig930.18302.1prot_L-elsbetiae_contig930.18302.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig930 30317..31000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.1248305-UTR-L-elsbetiae_contig930:30277..303161622817000.1248305-UTR-L-elsbetiae_contig930:30277..30316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig930 30278..30316 +
1691683973.097631-UTR-L-elsbetiae_contig930:30277..303161691683973.097631-UTR-L-elsbetiae_contig930:30277..30316Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig930 30278..30316 +
1622817000.145342-UTR-L-elsbetiae_contig930:31000..310461622817000.145342-UTR-L-elsbetiae_contig930:31000..31046Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig930 31001..31046 +
1691683973.1171-UTR-L-elsbetiae_contig930:31000..310461691683973.1171-UTR-L-elsbetiae_contig930:31000..31046Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig930 31001..31046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.1351411-CDS-L-elsbetiae_contig930:30316..310001622817000.1351411-CDS-L-elsbetiae_contig930:30316..31000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig930 30317..31000 +
1691683973.107705-CDS-L-elsbetiae_contig930:30316..310001691683973.107705-CDS-L-elsbetiae_contig930:30316..31000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig930 30317..31000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig930.18302.1

>prot_L-elsbetiae_contig930.18302.1 ID=prot_L-elsbetiae_contig930.18302.1|Name=mRNA_L-elsbetiae_contig930.18302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MVAKLPGGRVNARQTSSNTGGNTAFTELTVLSPSLPSIGGSPGSFRPPLR
PPPSPPSPSPPLPPSLSAATSATEARSVQTRGADESSAGLPPASPVALPF
QGAAASHETQAGTHRRRRYAPRGTSAAEEGEGVTAEAGAVVTLSPFLPPP
PPTPPPLSWLFRNSKCWVPGGPRDVVTAVTAGTATAEARSLRSDGAHGAF
DGPSAVAPTPTALAGESAMPGSEGHKR*
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mRNA from alignment at L-elsbetiae_contig930:30278..31046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig930.18302.1 ID=mRNA_L-elsbetiae_contig930.18302.1|Name=mRNA_L-elsbetiae_contig930.18302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=769bp|location=Sequence derived from alignment at L-elsbetiae_contig930:30278..31046+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACATCGTGGTCCGTCTTCATCACCTCGCGGAGGAACATGGTTGCAAA
GCTCCCGGGGGGCAGAGTGAACGCGAGACAAACATCATCCAATACCGGCG
GCAACACAGCATTCACTGAGCTCACCGTCCTCTCCCCCTCCCTTCCTTCC
ATCGGCGGATCCCCTGGCTCGTTTCGGCCACCACTGCGACCACCGCCTTC
CCCTCCATCTCCATCACCACCACTACCACCCTCACTGTCAGCAGCAACAA
GTGCAACAGAAGCGCGTTCTGTGCAGACGCGGGGCGCAGACGAATCCTCC
GCTGGGCTTCCACCAGCATCCCCGGTAGCACTACCATTCCAAGGGGCAGC
CGCCTCCCACGAAACACAGGCCGGCACGCACAGAAGACGCCGGTACGCTC
CCCGCGGCACCAGCGCGGCGGAGGAGGGGGAGGGTGTCACCGCCGAAGCT
GGTGCAGTCGTCACGTTGTCGCCATTCTTGCCGCCACCGCCGCCGACACC
GCCACCTCTCTCTTGGTTGTTCCGCAACTCGAAATGCTGGGTACCGGGTG
GTCCTCGAGACGTCGTTACCGCAGTTACCGCCGGTACCGCCACCGCCGAA
GCACGTTCTCTTCGTTCAGACGGCGCGCACGGGGCTTTCGATGGACCGTC
GGCGGTCGCACCAACACCAACAGCACTTGCAGGGGAATCCGCAATGCCAG
GTTCAGAGGGCCACAAGAGGTGATGGACACCGTCTTTCTCCAGACGCTCC
CGGTACATTCTCCGAACCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig930:30278..31046+

>mRNA_L-elsbetiae_contig930.18302.1 ID=mRNA_L-elsbetiae_contig930.18302.1|Name=mRNA_L-elsbetiae_contig930.18302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1368bp|location=Sequence derived from alignment at L-elsbetiae_contig930:30278..31046+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGCAAAGCTCCCGGGGGGCAGAGTGAACGCGAGACAAACATCATC
CAATACCGGCGGCAACACAGCATTCACTGAGCTCACCGTCCTCTCCCCCT
CCCTTCCTTCCATCGGCGGATCCCCTGGCTCGTTTCGGCCACCACTGCGA
CCACCGCCTTCCCCTCCATCTCCATCACCACCACTACCACCCTCACTGTC
AGCAGCAACAAGTGCAACAGAAGCGCGTTCTGTGCAGACGCGGGGCGCAG
ACGAATCCTCCGCTGGGCTTCCACCAGCATCCCCGGTAGCACTACCATTC
CAAGGGGCAGCCGCCTCCCACGAAACACAGGCCGGCACGCACAGAAGACG
CCGGTACGCTCCCCGCGGCACCAGCGCGGCGGAGGAGGGGGAGGGTGTCA
CCGCCGAAGCTGGTGCAGTCGTCACGTTGTCGCCATTCTTGCCGCCACCG
CCGCCGACACCGCCACCTCTCTCTTGGTTGTTCCGCAACTCGAAATGCTG
GGTACCGGGTGGTCCTCGAGACGTCGTTACCGCAGTTACCGCCGGTACCG
CCACCGCCGAAGCACGTTCTCTTCGTTCAGACGGCGCGCACGGGGCTTTC
GATGGACCGTCGGCGGTCGCACCAACACCAACAGCACTTGCAGGGGAATC
CGCAATGCCAGGTTCAGAGGGCCACAAGAGGTGAATGGTTGCAAAGCTCC
CGGGGGGCAGAGTGAACGCGAGACAAACATCATCCAATACCGGCGGCAAC
ACAGCATTCACTGAGCTCACCGTCCTCTCCCCCTCCCTTCCTTCCATCGG
CGGATCCCCTGGCTCGTTTCGGCCACCACTGCGACCACCGCCTTCCCCTC
CATCTCCATCACCACCACTACCACCCTCACTGTCAGCAGCAACAAGTGCA
ACAGAAGCGCGTTCTGTGCAGACGCGGGGCGCAGACGAATCCTCCGCTGG
GCTTCCACCAGCATCCCCGGTAGCACTACCATTCCAAGGGGCAGCCGCCT
CCCACGAAACACAGGCCGGCACGCACAGAAGACGCCGGTACGCTCCCCGC
GGCACCAGCGCGGCGGAGGAGGGGGAGGGTGTCACCGCCGAAGCTGGTGC
AGTCGTCACGTTGTCGCCATTCTTGCCGCCACCGCCGCCGACACCGCCAC
CTCTCTCTTGGTTGTTCCGCAACTCGAAATGCTGGGTACCGGGTGGTCCT
CGAGACGTCGTTACCGCAGTTACCGCCGGTACCGCCACCGCCGAAGCACG
TTCTCTTCGTTCAGACGGCGCGCACGGGGCTTTCGATGGACCGTCGGCGG
TCGCACCAACACCAACAGCACTTGCAGGGGAATCCGCAATGCCAGGTTCA
GAGGGCCACAAGAGGTGA
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