mRNA_L-elsbetiae_contig930.18301.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig930.18301.1
Unique NamemRNA_L-elsbetiae_contig930.18301.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 4.580e-50
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 1
Query:    1 MVHLGTVVSGVGLLTLLHAGFSAAHFQQFKKSS-------GDSAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAGGGKSLDSAESTREFEVFQHRGRSLRKRLA 300
            MVHLGTVVS  GLL LLHAG+SAAHFQQFKK S       GDSAPLDAALEA+ GFFVCV GVLYS++A LPI+GAAGGGKSLDSAESTREFEVF+HRGRSLR+R+A
Sbjct:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVA 107          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.170e-25
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 MVHLGTVVSGVGLLTLLHAGFSAAHFQQF-------KKSSGDSAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAGGGKSLDSAESTREFEVFQHRGRSLRKR 294
            MV LGT+V+G+GLL LLHAG+SAAH++QF          + D+ PLDA +E I GF +CV GV+ ++   LP+RG AGGG+S D+ E    F VF HR   LR+R
Sbjct:    1 MVKLGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRR 105          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A7S2V2I7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.850e-15
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   13 GTVVSGVGLLTLLHAGFSAAHFQQFKKSSGDSA--------PLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAGGGK-SLDSAESTREFEVFQHRGRSLRKRL 297
            GTV+  +G+  LLHAG+SAAHF+    SS   A        P+D  +    GF VC++GVL S+    PI  + G G+ S D   S+ EF +F HRG++L KRL
Sbjct:    4 GTVIILIGMAILLHAGYSAAHFKSLVVSSVHGADLSNVSIPPVDVVVGCAIGFSVCLLGVLTSAAPLKPIVASHGAGQGSFDEMASSPEFNIFNHRGKALSKRL 107          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A3M6VHM6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.150e-8
Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 1
Query:    1 MVHLGTVVSGVGLLTLLHAGFSAAHFQQFKKSS----GDSAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGA-AGGGKSLDSAESTREFEVFQHRGRSLRKRL 297
            M  +G ++  +G L L+HA + +  ++ + KS+        P +  +E +  F + +VGVL +S   LPIR   A   +SL +  S+ +F VF HRG++L KR+
Sbjct:    1 MAIIGKLLIAMGTLLLVHASYYSVQYETYAKSTETLDAPMPPFEVVVELVVSFLISLVGVLLTSGEMLPIRSNDALHSRSLATVISSPDFHVFNHRGKTLHKRV 104          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A0L7QXM4_9HYME (Membrane magnesium transporter n=2 Tax=Apoidea TaxID=34735 RepID=A0A0L7QXM4_9HYME)

HSP 1 Score: 56.2 bits (134), Expect = 7.170e-8
Identity = 31/94 (32.98%), Postives = 55/94 (58.51%), Query Frame = 1
Query:   22 VSGVGLLTLLHAGFSAAHFQQFKKSSGD---SAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAG-GGKSLDSAESTREFEVFQHRGRSLRK 291
            ++ +GLL++LHA +SAA  + + + +     + P+D  ++ IA  F+ + GV+Y +  F  IR       KS ++  +   F++F HRGRSLR+
Sbjct:   25 ITFIGLLSILHAAYSAAQHRSYLRITEQEFTTLPIDILIQGIASLFMVMYGVMYIAGDFKEIRAVVDLENKSWETLRNLPSFQIFNHRGRSLRR 118          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A5E4MBB6_9HEMI (Membrane magnesium transporter n=3 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4MBB6_9HEMI)

HSP 1 Score: 52.8 bits (125), Expect = 1.440e-6
Identity = 31/98 (31.63%), Postives = 54/98 (55.10%), Query Frame = 1
Query:    1 MVHLGTVVSGVGLLTLLHAGFSAAHFQQFKK---SSGDSAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAGGG-KSLDSAESTREFEVFQHRGRS 282
            M+ L   +  +G+L+L+HA +SAA  + + +    + D  P D  ++ I    + + G+LYS+  F  IR     G K+L++  +T  F +F HRG+S
Sbjct:    1 MISLNKQIFFLGILSLVHAAYSAAQHRSYLRITEQTFDGLPFDILMQGIVSLGMSMYGILYSAGDFKEIRAMEDLGLKTLETLHNTPSFYIFNHRGKS 98          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A6P8HEP3_ACTTE (Membrane magnesium transporter n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HEP3_ACTTE)

HSP 1 Score: 52.4 bits (124), Expect = 1.530e-6
Identity = 32/99 (32.32%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 MVHLGTVVSGVGLLTLLHAGFSAAHFQQFKKSSGD---SAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAG-GGKSLDSAESTREFEVFQHRGRSL 285
            M+ LG ++  +GL+ +LHAG+SA   + + K   +   S P+D  ++ + G  +  +GV+  +  F  IR AA    KS +S  +   F  F HRGR++
Sbjct:    1 MIILGRILVFIGLIAILHAGYSAVQCRTYYKLLEEEFTSLPIDIYIQCLLGMLLGCIGVVLVAGEFKEIRAAAEMASKSWESLGNRPSFYTFNHRGRAM 99          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: A0A7S3JYD9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYD9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 4.360e-6
Identity = 34/96 (35.42%), Postives = 48/96 (50.00%), Query Frame = 1
Query:   10 LGTVVSGVGLLTLLHAGFSAAHFQQFKKSSGDSAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAGGGK-SLDSAESTREFEVFQHRGRSLRKR 294
            L   +SG+G++ L+HAGFS  H +          P+D  +E    FF  V+  L        IR AA   + + D+A    EF+V  HRG+SL KR
Sbjct:    4 LSKFLSGLGMMLLVHAGFSTIHIKGLDPEV-KLPPIDVLIEVCVAFFFAVISSLMQMPELKKIRNAADLDEFATDAAFHPPEFQVVHHRGQSLAKR 98          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: UPI000A2A52AD (membrane magnesium transporter 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A52AD)

HSP 1 Score: 50.4 bits (119), Expect = 8.480e-6
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 1
Query:    1 MVHLGTVVSGVGLLTLLHAGFSAAHFQQFKKSSGD---SAPLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAG-GGKSLDSAESTREFEVFQHRGRSL 285
            M+ LG ++  +GL+ +LHAG+SA   + + K   +   S P+D  ++ + G     VGV+  +  F  IR AA    KS +S  +   F  F HRG+ L
Sbjct:    1 MIILGRILVFIGLVAILHAGYSAVQCRTYYKLLEEEFTSLPVDIFIQCLLGMLFGCVGVVLVAGEFKEIRAAAEMASKSWESLGNRPSFYTFNHRGKKL 99          
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Match: UPI000C6DC552 (membrane magnesium transporter 1-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6DC552)

HSP 1 Score: 48.1 bits (113), Expect = 6.110e-5
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = 1
Query:   31 VGLLTLLHAGFSAAHFQQFKKSSGDS---APLDAALEAIAGFFVCVVGVLYSSEAFLPIRGAAG-GGKSLDSAESTREFEVFQHRGRSL 285
            VGLL+L+HA +SAA  + + + +       PLD  ++++ G    + GVLY +  F  IR       KS ++  +   F +F HRGR L
Sbjct:   11 VGLLSLIHAAYSAAQHRSYLRLTEQEFTQLPLDIIVQSVIGLIATMYGVLYVAGDFKEIRATVELENKSFETYGNRPSFYIFNHRGRVL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig930.18301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LTM7_ECTSI4.580e-5079.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS2_9STRA1.170e-2550.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2I7_9STRA5.850e-1542.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3M6VHM6_9STRA1.150e-832.69Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0L7QXM4_9HYME7.170e-832.98Membrane magnesium transporter n=2 Tax=Apoidea Tax... [more]
A0A5E4MBB6_9HEMI1.440e-631.63Membrane magnesium transporter n=3 Tax=Cinara cedr... [more]
A0A6P8HEP3_ACTTE1.530e-632.32Membrane magnesium transporter n=1 Tax=Actinia ten... [more]
A0A7S3JYD9_9STRA4.360e-635.42Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
UPI000A2A52AD8.480e-633.33membrane magnesium transporter 1 n=1 Tax=Exaiptasi... [more]
UPI000C6DC5526.110e-533.71membrane magnesium transporter 1-like n=1 Tax=Cent... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig930contigL-elsbetiae_contig930:28795..29103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue7.6e-09
Seed eggNOG ortholog4792.ETI54961
Preferred nameMMGT1
KEGG koko:K18163
KEGG Pathwayko04714,map04714
Hectar predicted targeting categorysignal peptide
GOsGO:0000041,GO:0000139,GO:0003674,GO:0005215,GO:0005375,GO:0005381,GO:0005384,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006824,GO:0006825,GO:0006826,GO:0006828,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015087,GO:0015093,GO:0015095,GO:0015099,GO:0015318,GO:0015675,GO:0015684,GO:0015693,GO:0016020,GO:0016021,GO:0022857,GO:0022890,GO:0030001,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0034220,GO:0034755,GO:0035434,GO:0035444,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046915,GO:0051179,GO:0051234,GO:0055085,GO:0070838,GO:0071421,GO:0071944,GO:0072509,GO:0072511,GO:0072546,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098791,GO:0098796,GO:0098827,GO:1903830,GO:1903874
EggNOG free text desc.Membrane magnesium transporter
EggNOG OGs3QIW3@4776,KOG3918@1,KOG3918@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Ec32 ortholog descriptionMagnesium transporter
Ec32 orthologEc-28_003510.1
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817000.4139194-CDS-L-elsbetiae_contig930:28794..291031622817000.4139194-CDS-L-elsbetiae_contig930:28794..29103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig930 28795..29103 +
1691683973.3166032-CDS-L-elsbetiae_contig930:28794..291031691683973.3166032-CDS-L-elsbetiae_contig930:28794..29103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig930 28795..29103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig930.18301.1prot_L-elsbetiae_contig930.18301.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig930 28795..29103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig930.18301.1

>prot_L-elsbetiae_contig930.18301.1 ID=prot_L-elsbetiae_contig930.18301.1|Name=mRNA_L-elsbetiae_contig930.18301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MVHLGTVVSGVGLLTLLHAGFSAAHFQQFKKSSGDSAPLDAALEAIAGFF
VCVVGVLYSSEAFLPIRGAAGGGKSLDSAESTREFEVFQHRGRSLRKRLA
EK*
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mRNA from alignment at L-elsbetiae_contig930:28795..29103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig930.18301.1 ID=mRNA_L-elsbetiae_contig930.18301.1|Name=mRNA_L-elsbetiae_contig930.18301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig930:28795..29103+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACATCTGGGAACAGTGGTCTCTGGCGTGGGCCTGTTGACCCTCCT CCACGCCGGTTTTTCCGCGGCGCACTTCCAGCAGTTCAAGAAATCCTCGG GAGACTCTGCCCCGCTCGACGCCGCCCTCGAGGCGATCGCAGGCTTCTTC GTCTGCGTGGTCGGGGTCTTGTATAGCTCGGAAGCATTTCTGCCAATACG GGGGGCGGCGGGGGGCGGCAAGTCGCTGGACTCGGCCGAGTCGACTAGGG AGTTCGAGGTCTTCCAGCACCGAGGCAGATCACTCAGGAAACGTTTGGCG GAAAAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig930:28795..29103+

>mRNA_L-elsbetiae_contig930.18301.1 ID=mRNA_L-elsbetiae_contig930.18301.1|Name=mRNA_L-elsbetiae_contig930.18301.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig930:28795..29103+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACATCTGGGAACAGTGGTCTCTGGCGTGGGCCTGTTGACCCTCCT
CCACGCCGGTTTTTCCGCGGCGCACTTCCAGCAGTTCAAGAAATCCTCGG
GAGACTCTGCCCCGCTCGACGCCGCCCTCGAGGCGATCGCAGGCTTCTTC
GTCTGCGTGGTCGGGGTCTTGTATAGCTCGGAAGCATTTCTGCCAATACG
GGGGGCGGCGGGGGGCGGCAAGTCGCTGGACTCGGCCGAGTCGACTAGGG
AGTTCGAGGTCTTCCAGCACCGAGGCAGATCACTCAGGAAACGTTTGGCG
GAAAAATAAATGGTACATCTGGGAACAGTGGTCTCTGGCGTGGGCCTGTT
GACCCTCCTCCACGCCGGTTTTTCCGCGGCGCACTTCCAGCAGTTCAAGA
AATCCTCGGGAGACTCTGCCCCGCTCGACGCCGCCCTCGAGGCGATCGCA
GGCTTCTTCGTCTGCGTGGTCGGGGTCTTGTATAGCTCGGAAGCATTTCT
GCCAATACGGGGGGCGGCGGGGGGCGGCAAGTCGCTGGACTCGGCCGAGT
CGACTAGGGAGTTCGAGGTCTTCCAGCACCGAGGCAGATCACTCAGGAAA
CGTTTGGCGGAAAAATAA
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