mRNA_L-elsbetiae_contig9296.18294.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9296.18294.1
Unique NamemRNA_L-elsbetiae_contig9296.18294.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.850e-13
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    2 MRLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKVKPG 157
            MRLSRRIARS +ASRREAER+V AGVVMVNG  VQTPAL +G RDI+KV  G
Sbjct:  113 MRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVG 164
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.190e-12
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 2 
Query:    2 MRLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKVKPG 157
            MRLSRRIARS +ASRREAER+V AGVVMVNG  VQTPAL +G RDI+KV  G
Sbjct:  113 MRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVG 164
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: A0A6P1SWY1_9RHOB (Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium 9Alg 56 TaxID=2683284 RepID=A0A6P1SWY1_9RHOB)

HSP 1 Score: 51.2 bits (121), Expect = 1.510e-5
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    5 RLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            R+++RIAR+ +ASRREAERL+G G V VNG  + +PAL +  +D+I V
Sbjct:    5 RIAKRIARAGLASRREAERLIGEGRVSVNGKRIDSPALNVSEKDVITV 52
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: A0A067W712_9HYPH (Pseudouridine synthase n=2 Tax=Bartonella koehlerae TaxID=92181 RepID=A0A067W712_9HYPH)

HSP 1 Score: 51.2 bits (121), Expect = 1.830e-5
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:    5 RLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            R+++R+AR+ +ASRR+AE ++ AG ++VNGT V TPAL++   D+IKV
Sbjct:   42 RIAKRLARAGVASRRDAEMMISAGRIVVNGTVVTTPALKVTRSDVIKV 89
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: A0A7S9LT73_9RHOB (Pseudouridine synthase n=1 Tax=Pontivivens ytuae TaxID=2789856 RepID=A0A7S9LT73_9RHOB)

HSP 1 Score: 50.8 bits (120), Expect = 2.130e-5
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    5 RLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            R+++RIAR+  ASRREAERL+ AG V VNG P+ +PAL +  RD I+V
Sbjct:   10 RIAKRIARAGRASRREAERLIEAGRVRVNGKPIDSPALNVTDRDRIEV 57
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: UPI000DD3FCD2 (rRNA pseudouridine synthase n=1 Tax=Oceanibium sediminis TaxID=2026339 RepID=UPI000DD3FCD2)

HSP 1 Score: 50.8 bits (120), Expect = 2.220e-5
Identity = 26/48 (54.17%), Postives = 38/48 (79.17%), Query Frame = 2 
Query:    5 RLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            R+++R+AR+ +ASRREAER++ AG V VNG  + +PAL +G RD I+V
Sbjct:    7 RIAKRLARAGVASRREAERMIEAGRVRVNGKTIDSPALNVGPRDSIEV 54
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: UPI0002D622DE (rRNA pseudouridine synthase n=1 Tax=Bartonella florencae TaxID=928210 RepID=UPI0002D622DE)

HSP 1 Score: 49.3 bits (116), Expect = 8.680e-5
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    5 RLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            R+++R+ARS +ASRR+AE ++ AG V+VNG  V TPA  + L D+IKV
Sbjct:    9 RIAKRLARSGIASRRDAEMMIVAGRVVVNGKVVTTPAFNVTLSDVIKV 56
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BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: UPI001ABAAB06 (rRNA pseudouridine synthase n=1 Tax=Candidatus Bartonella raoultii TaxID=1457020 RepID=UPI001ABAAB06)

HSP 1 Score: 49.3 bits (116), Expect = 8.680e-5
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 2 
Query:    5 RLSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            R+++R+ARS +ASRR+AE ++ AG V+VNG  V TPA  + L D+IKV
Sbjct:    9 RIAKRLARSGIASRRDAEMMIVAGRVVVNGKVVTTPAFNVTLSDVIKV 56
[Close]
BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Match: A0A651F3U7_9PROT (Pseudouridine synthase n=1 Tax=Micavibrio sp. TaxID=2024841 RepID=A0A651F3U7_9PROT)

HSP 1 Score: 48.9 bits (115), Expect = 9.710e-5
Identity = 26/47 (55.32%), Postives = 36/47 (76.60%), Query Frame = 2 
Query:    8 LSRRIARSAMASRREAERLVGAGVVMVNGTPVQTPALRMGLRDIIKV 148
            ++RRIAR+ + SRREAE+LV AG V+VNG  V+TPA+R+   D + V
Sbjct:    7 IARRIARAGICSRREAEKLVEAGRVVVNGQRVETPAMRVAATDKVAV 53
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9296.18294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5J9J6_9PHAE6.850e-1376.92S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LDE8_ECTSI1.190e-1276.92RNA pseudouridylate synthase domain-containing pro... [more]
A0A6P1SWY1_9RHOB1.510e-554.17Pseudouridine synthase n=1 Tax=Rhodobacteraceae ba... [more]
A0A067W712_9HYPH1.830e-552.08Pseudouridine synthase n=2 Tax=Bartonella koehlera... [more]
A0A7S9LT73_9RHOB2.130e-558.33Pseudouridine synthase n=1 Tax=Pontivivens ytuae T... [more]
UPI000DD3FCD22.220e-554.17rRNA pseudouridine synthase n=1 Tax=Oceanibium sed... [more]
UPI0002D622DE8.680e-554.17rRNA pseudouridine synthase n=1 Tax=Bartonella flo... [more]
UPI001ABAAB068.680e-554.17rRNA pseudouridine synthase n=1 Tax=Candidatus Bar... [more]
A0A651F3U7_9PROT9.710e-555.32Pseudouridine synthase n=1 Tax=Micavibrio sp. TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9296contigL-elsbetiae_contig9296:2516..4528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size268
Cds size267
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9296.18294.1prot_L-elsbetiae_contig9296.18294.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9296 2517..4528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.6915824-CDS-L-elsbetiae_contig9296:2516..25481622816999.6915824-CDS-L-elsbetiae_contig9296:2516..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 2517..2548 -
1691683972.7785437-CDS-L-elsbetiae_contig9296:2516..25481691683972.7785437-CDS-L-elsbetiae_contig9296:2516..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 2517..2548 -
1622816999.7014601-CDS-L-elsbetiae_contig9296:3986..40701622816999.7014601-CDS-L-elsbetiae_contig9296:3986..4070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 3987..4070 -
1691683972.7915099-CDS-L-elsbetiae_contig9296:3986..40701691683972.7915099-CDS-L-elsbetiae_contig9296:3986..4070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 3987..4070 -
1622816999.7142181-CDS-L-elsbetiae_contig9296:4377..45281622816999.7142181-CDS-L-elsbetiae_contig9296:4377..4528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 4378..4528 -
1691683972.8040428-CDS-L-elsbetiae_contig9296:4377..45281691683972.8040428-CDS-L-elsbetiae_contig9296:4377..4528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9296 4378..4528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9296.18294.1

>prot_L-elsbetiae_contig9296.18294.1 ID=prot_L-elsbetiae_contig9296.18294.1|Name=mRNA_L-elsbetiae_contig9296.18294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
DAPVSPHCEVRHGFPSRGRASGGGGGGDGERNTGADPGAEDGTPRHHQSQ
ARGEHWSGRRTTRPNCGWRTRLGASLSRGTVGLLLLYNT
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mRNA from alignment at L-elsbetiae_contig9296:2516..4528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9296.18294.1 ID=mRNA_L-elsbetiae_contig9296.18294.1|Name=mRNA_L-elsbetiae_contig9296.18294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2013bp|location=Sequence derived from alignment at L-elsbetiae_contig9296:2516..4528- (Laminarionema elsbetiae ELsaHSoW15)
GATGCGCCTGTCTCGCCGCATTGCGAGGTCCGCCATGGCTTCCCGTCGAG
AGGCCGAGCGTCTGGTGGGGGCGGGGGTGGTGATGGTGAACGGAACACCG
GTGCAGACCCCGGCGCTGAGGATGGGACTCCGAGACATCATCAAAGTCAA
GGTTAGGCTAGGCTCTTTGTTATCGTTTTGATTTGGGCACAGTAGGGTAC
GGAGCGGGCCGGCACTCCGCTCAGTGGTATGCGCCCAATCAGATTGGGTC
AAGATCGATCCGTTGATCAGCGAAATGGAACCGATATAGATTTCAGTATA
GGGTTTAAGCATCTGCGCCAGCCAGGCTGTTGAGCAAATCCTGCCACCTT
ATTTGATTGGTTGCCTGTTTGCATGTTTGTGTGTCGGACCGTTCCGTGCT
CGTTTTTTTGGCGTGTTTTTTGTTAATCATTTGTTGTCCTTGTCGGTGTT
GATGGCAGCCAGGGGAGAGCACTGGAGCGGCCGGAGGACCACACGCCCGA
ACTGTGGATGGCGCACAAGACTAGGCGCGAGCTTGTCACGAGGCACGATT
CGACAGGCTGGTGGTGCGTGCGCAATATCTACAAGTTGCCTATTGCGTAA
AGCGCGGGGGGGTGTCTTTATGGCGCGCGTACACGTGCAGCAGTTACTTT
AAGGCGGCGGTAAGGGGTACCCATTGGTCAGTACAGACTTTTTTCGAAGA
ATACTCGCATATCCCTCTGAACATCACGGAGCCTGACTTGGAGTTTGGGT
GGGCTTTCCCAACACGCCCGCGTGATCTGACATAGTTCTGCCATAAAGGA
GAGGTGCTCCGAGACTTTCGGCTTTGAAAAAATTGAGTTTGCGGAGAGGT
TTTAATCCACCCCTCGCGCATATGAAATGGGAGCCCCGCTCAATTTGCTG
TGGGACCCCTCGACTATTCTACACTCCTCCAAAATAGGCGGGCTACATTC
GCGTCTACAGAGTCCGTTTCTTGATCGGGGCGAAAAAGCACCGTGTGGGG
CTCTGGGGCGTGGCTTGAAATATTCACCCGATTAAACGAAAAAAGACCGG
TTGGAGAAATTGTTCGTGTGCACCAGAACACCGAAAGGGTGGTGCATGAC
CACCTGCTGCTGCTACCCAGGACATGCAGCGGCCCCTACACACCATATCA
GTAGGCCCTCCCAGCATCTTCTGCTGTTCTTGCCCTTAGGGGCGAGCTAG
CTGATCTTTTGAACACCAAGCTGCCAGTTGGAAGGATCCTTTCGAAACAG
TGATTTTTGCACCTCGGAGAGCAAACTTTCCGCCTCCCAAGACGGCCGGA
AATTCAGCGGCGAAGCATTTCTCGGTAGAGAACCGCAAACTGTTGCGTTC
GAGTGGTTCGAGAGGTTGAGCAGCGGGGCGCTAAGGGGCAAACTGGAATG
TGATGGTGCTTTTGGGAGGGCCCGTTCTATCACTTTCAGCGTACCCCCAA
ACAGTTTGAAATAAAAAATCAATCGAATCGTGCTCCTGGATCCAAAAGTC
CAGCTGTGGTAATGCTCTCACCGGCCCTTAAGCCTGGCGTGTGCTCCCGG
CTTTTGTTCCATGTGCAGCGCCACCATTTTCGACGCTATATTCGTACAGT
CTACGAGTGGTGTTCGAGTAGGGAATGCGTGCGAAAACGCCAATTACGTT
ATTGCTTCGGTTGATAAGCGTGAGGATCGAGTTTTGAGCCAGCTGTGCAC
GAAGTGTAGCAATCGGCAGAGTTTCCCGGCTAATGTTCTCCCTTTGTTAT
CTATGTATGTATCTGCGCATGTAACATATCGTTTCCGATGGCTTGTCTCA
AATACCGAAAGAGTTGGGTTGCGAGTAGTAGACTGGTGCTTCAGTTCTTG
GGGGCAGCGTTCACCTGTCAAAGGAAACCCAGGCATGAAATCAGAGCGCC
CCATGGCGGTGGCGGCAACCAATGTGTCCCTCTATTCCTGCCGGCGACAC
AACGCGGCGACTCTCCGCTTTTTTGCGCAGGGACGGTTGGACTACTTCTG
CTGTACAACACAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9296:2516..4528-

>mRNA_L-elsbetiae_contig9296.18294.1 ID=mRNA_L-elsbetiae_contig9296.18294.1|Name=mRNA_L-elsbetiae_contig9296.18294.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig9296:2516..4528- (Laminarionema elsbetiae ELsaHSoW15)
GATGCGCCTGTCTCGCCGCATTGCGAGGTCCGCCATGGCTTCCCGTCGAG
AGGCCGAGCGTCTGGTGGGGGCGGGGGTGGTGATGGTGAACGGAACACCG
GTGCAGACCCCGGCGCTGAGGATGGGACTCCGAGACATCATCAAAGTCAA
GGATGCGCCTGTCTCGCCGCATTGCGAGGTCCGCCATGGCTTCCCGTCGA
GAGGCCGAGCGTCTGGTGGGGGCGGGGGTGGTGATGGTGAACGGAACACC
GGTGCAGACCCCGGCGCTGAGGATGGGACTCCGAGACATCATCAAAGTCA
AGCCAGGGGAGAGCACTGGAGCGGCCGGAGGACCACACGCCCGAACTGTG
GATGGCGCACAAGACTAGGCGCGAGCTTGTCACGAGCCAGGGGAGAGCAC
TGGAGCGGCCGGAGGACCACACGCCCGAACTGTGGATGGCGCACAAGACT
AGGCGCGAGCTTGTCACGAGGGACGGTTGGACTACTTCTGCTGTACAACA
CAGGACGGTTGGACTACTTCTGCTGTACAACACA
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