mRNA_L-elsbetiae_contig9281.18286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9281.18286.1
Unique NamemRNA_L-elsbetiae_contig9281.18286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9281.18286.1 vs. uniprot
Match: A0A6H5JUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.420e-24
Identity = 58/91 (63.74%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:    1 QTVKELVDNAIDACRCRTSDQEAPTVRVVLRRRSKNRADIEDQ-EGLEGQKCEPLELQVADNGDGLNDVTQALVLFSSSKSGHGSLAAAGL 270
            QTVKELVDNAID+CRCR S+Q+APTVRVVLRR +      E   E L+  + EPLELQVADNG GL DVT+A+ LFSS+KSGH    A G+
Sbjct:   27 QTVKELVDNAIDSCRCRASEQDAPTVRVVLRRSAAGATVAEGVVEDLDLDE-EPLELQVADNGAGLTDVTKAVGLFSSTKSGHTPPVAPGV 116
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BLAST of mRNA_L-elsbetiae_contig9281.18286.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.630e-23
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    1 QTVKELVDNAIDACRCRTSDQEAPTVRVVLRRRSKNRADIEDQ-EGLEGQKCEPLELQVADNGDGLNDVTQALVLFSSSKSGH 246
            QTVKELVDNAID+CRCRTS+Q+APTVRVVLRR +   A  E   E L+ ++ EPLELQVADNG GL DVT+AL LFSS+KSGH
Sbjct:    7 QTVKELVDNAIDSCRCRTSEQDAPTVRVVLRRAAAGAAVAEGVGEDLDLEE-EPLELQVADNGAGLTDVTKALGLFSSTKSGH 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9281.18286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUR8_9PHAE1.420e-2463.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMM1_ECTSI2.630e-2371.08Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9281contigL-elsbetiae_contig9281:3952..4449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FMM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase-like ATPases
EggNOG OGs2E55C@1,2SBZP@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size292
Cds size276
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9281.18286.1prot_L-elsbetiae_contig9281.18286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9281 3967..4449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.1286533-UTR-L-elsbetiae_contig9281:3951..39661622816999.1286533-UTR-L-elsbetiae_contig9281:3951..3966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9281 3952..3966 -
1691683972.3526802-UTR-L-elsbetiae_contig9281:3951..39661691683972.3526802-UTR-L-elsbetiae_contig9281:3951..3966Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9281 3952..3966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816999.1390743-CDS-L-elsbetiae_contig9281:3966..40881622816999.1390743-CDS-L-elsbetiae_contig9281:3966..4088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9281 3967..4088 -
1691683972.3704498-CDS-L-elsbetiae_contig9281:3966..40881691683972.3704498-CDS-L-elsbetiae_contig9281:3966..4088Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9281 3967..4088 -
1622816999.1496086-CDS-L-elsbetiae_contig9281:4295..44491622816999.1496086-CDS-L-elsbetiae_contig9281:4295..4449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9281 4296..4449 -
1691683972.3808722-CDS-L-elsbetiae_contig9281:4295..44491691683972.3808722-CDS-L-elsbetiae_contig9281:4295..4449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9281 4296..4449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9281.18286.1

>prot_L-elsbetiae_contig9281.18286.1 ID=prot_L-elsbetiae_contig9281.18286.1|Name=mRNA_L-elsbetiae_contig9281.18286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
QTVKELVDNAIDACRCRTSDQEAPTVRVVLRRRSKNRADIEDQEGLEGQK
CEPLELQVADNGDGLNDVTQALVLFSSSKSGHGSLAAAGLF*
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mRNA from alignment at L-elsbetiae_contig9281:3952..4449-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9281.18286.1 ID=mRNA_L-elsbetiae_contig9281.18286.1|Name=mRNA_L-elsbetiae_contig9281.18286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig9281:3952..4449- (Laminarionema elsbetiae ELsaHSoW15)
CAAACAGTGAAGGAGCTGGTGGACAACGCCATAGACGCGTGCAGATGTCG
GACTTCTGACCAGGAAGCCCCTACGGTGCGGGTCGTGCTCCGACGCCGTA
GCAAGAACAGGGCCGATATCGAGGATCAAGAGGGGCTAGAAGGACAAAAG
TGTGGTGAGTCACGTCCGTTCGTCTAGTCGCCGTTACGTGAGTCGTCCCG
GCCAACACAACTGCAGCTGTGACACCAGCAGTTCTGCTGTTCAAGTTCGG
CAACTGTAGGACTGACATTATTCTGCTATTTGCGCTCTGCATACACTACC
GCAAACCCGTTGCTGGTGAACCGTGAACGTTTGTGAATGACGATGATGGC
GATGCATCCAGAGCCGCTCGAGCTGCAGGTGGCGGACAATGGCGACGGGC
TGAACGATGTTACCCAGGCCCTCGTGCTGTTCTCGTCCTCCAAGTCAGGG
CATGGTTCGCTCGCCGCCGCAGGTTTGTTCTAGACCTTCACTATACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9281:3952..4449-

>mRNA_L-elsbetiae_contig9281.18286.1 ID=mRNA_L-elsbetiae_contig9281.18286.1|Name=mRNA_L-elsbetiae_contig9281.18286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig9281:3952..4449- (Laminarionema elsbetiae ELsaHSoW15)
CAAACAGTGAAGGAGCTGGTGGACAACGCCATAGACGCGTGCAGATGTCG
GACTTCTGACCAGGAAGCCCCTACGGTGCGGGTCGTGCTCCGACGCCGTA
GCAAGAACAGGGCCGATATCGAGGATCAAGAGGGGCTAGAAGGACAAAAG
TGTGCAAACAGTGAAGGAGCTGGTGGACAACGCCATAGACGCGTGCAGAT
GTCGGACTTCTGACCAGGAAGCCCCTACGGTGCGGGTCGTGCTCCGACGC
CGTAGCAAGAACAGGGCCGATATCGAGGATCAAGAGGGGCTAGAAGGACA
AAAGTGTGAGCCGCTCGAGCTGCAGGTGGCGGACAATGGCGACGGGCTGA
ACGATGTTACCCAGGCCCTCGTGCTGTTCTCGTCCTCCAAGTCAGGGCAT
GGTTCGCTCGCCGCCGCAGGTTTGTTCTAGAGCCGCTCGAGCTGCAGGTG
GCGGACAATGGCGACGGGCTGAACGATGTTACCCAGGCCCTCGTGCTGTT
CTCGTCCTCCAAGTCAGGGCATGGTTCGCTCGCCGCCGCAGGTTTGTTCT
AG
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