mRNA_L-elsbetiae_contig9269.18276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9269.18276.1
Unique NamemRNA_L-elsbetiae_contig9269.18276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9269.18276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9269contigL-elsbetiae_contig9269:4554..5334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size781
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9269.18276.1prot_L-elsbetiae_contig9269.18276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9269 4720..5181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.2002401-UTR-L-elsbetiae_contig9269:4553..47191622816998.2002401-UTR-L-elsbetiae_contig9269:4553..4719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9269 4554..4719 +
1691683971.603369-UTR-L-elsbetiae_contig9269:4553..47191691683971.603369-UTR-L-elsbetiae_contig9269:4553..4719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9269 4554..4719 +
1622816998.2201786-UTR-L-elsbetiae_contig9269:5181..53341622816998.2201786-UTR-L-elsbetiae_contig9269:5181..5334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9269 5182..5334 +
1691683971.6307504-UTR-L-elsbetiae_contig9269:5181..53341691683971.6307504-UTR-L-elsbetiae_contig9269:5181..5334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9269 5182..5334 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816998.2104216-CDS-L-elsbetiae_contig9269:4719..51811622816998.2104216-CDS-L-elsbetiae_contig9269:4719..5181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9269 4720..5181 +
1691683971.6181939-CDS-L-elsbetiae_contig9269:4719..51811691683971.6181939-CDS-L-elsbetiae_contig9269:4719..5181Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9269 4720..5181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9269.18276.1

>prot_L-elsbetiae_contig9269.18276.1 ID=prot_L-elsbetiae_contig9269.18276.1|Name=mRNA_L-elsbetiae_contig9269.18276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MRKTTVAFLGGENVLVPWRSSVLEWKHGGFRGGPSGHRIFTAFFTDAAIR
RIVKKYDRDKRYESYTYACTTRFFFCLSSRIGSAVYLMLHAGVVRQGQQR
CRALQVPRLFHFCQKRWSSVRRSVCFRYPAYVCPQVTERGRCISLLFWVG
FTP*
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mRNA from alignment at L-elsbetiae_contig9269:4554..5334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9269.18276.1 ID=mRNA_L-elsbetiae_contig9269.18276.1|Name=mRNA_L-elsbetiae_contig9269.18276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=781bp|location=Sequence derived from alignment at L-elsbetiae_contig9269:4554..5334+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGGTTTTATAAGCGTCTTCATGTCGCTCTGTTTTTTTTTTTGCGT
ACTCAGGATGGGTGCAGTGCTTCCCCCGCTTCCTGTTGAAAAGGACTCCC
GGTCTGCTCAAAGCGTATTATTAGTGTTTTCCGATTATATTTGTTTTTCT
GGTGACGCACGTCTGTATGCGTAAGACTACTGTCGCTTTTTTGGGGGGAG
AGAATGTTCTTGTGCCTTGGAGGTCATCCGTGTTGGAATGGAAGCATGGC
GGGTTTCGTGGTGGTCCATCAGGCCATCGTATCTTCACTGCTTTCTTCAC
TGACGCCGCCATTCGTAGGATTGTCAAGAAATACGATCGCGATAAACGGT
ATGAGTCATATACATACGCATGCACTACTCGCTTTTTTTTTTGTCTGAGT
TCCAGAATCGGGAGTGCAGTTTATTTGATGCTTCACGCCGGTGTGGTGCG
TCAAGGGCAGCAGCGTTGCAGAGCGCTGCAAGTGCCTCGGTTGTTTCACT
TTTGCCAGAAGCGATGGTCCAGTGTACGTAGAAGCGTGTGCTTTCGTTAC
CCTGCGTATGTGTGTCCGCAGGTTACCGAAAGAGGAAGGTGTATTAGTTT
GCTTTTTTGGGTTGGTTTCACGCCTTGAATGTAATAGTCGTTCACATTCG
ATGCTTTTTTTTGGGTCTCCCGAGGGCTTCTCGGCTGCTACTACTACTGC
CTTGTCGCATGCCGTTCTTTTCCCACGACCGGTCCGTACAGCCTGCCTGA
TGTTCACGGCCTTGTTTCCGGCGAAGGATAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9269:4554..5334+

>mRNA_L-elsbetiae_contig9269.18276.1 ID=mRNA_L-elsbetiae_contig9269.18276.1|Name=mRNA_L-elsbetiae_contig9269.18276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig9269:4554..5334+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTAAGACTACTGTCGCTTTTTTGGGGGGAGAGAATGTTCTTGTGCC
TTGGAGGTCATCCGTGTTGGAATGGAAGCATGGCGGGTTTCGTGGTGGTC
CATCAGGCCATCGTATCTTCACTGCTTTCTTCACTGACGCCGCCATTCGT
AGGATTGTCAAGAAATACGATCGCGATAAACGGTATGAGTCATATACATA
CGCATGCACTACTCGCTTTTTTTTTTGTCTGAGTTCCAGAATCGGGAGTG
CAGTTTATTTGATGCTTCACGCCGGTGTGGTGCGTCAAGGGCAGCAGCGT
TGCAGAGCGCTGCAAGTGCCTCGGTTGTTTCACTTTTGCCAGAAGCGATG
GTCCAGTGTACGTAGAAGCGTGTGCTTTCGTTACCCTGCGTATGTGTGTC
CGCAGGTTACCGAAAGAGGAAGGTGTATTAGTTTGCTTTTTTGGGTTGGT
TTCACGCCTTGAATGCGTAAGACTACTGTCGCTTTTTTGGGGGGAGAGAA
TGTTCTTGTGCCTTGGAGGTCATCCGTGTTGGAATGGAAGCATGGCGGGT
TTCGTGGTGGTCCATCAGGCCATCGTATCTTCACTGCTTTCTTCACTGAC
GCCGCCATTCGTAGGATTGTCAAGAAATACGATCGCGATAAACGGTATGA
GTCATATACATACGCATGCACTACTCGCTTTTTTTTTTGTCTGAGTTCCA
GAATCGGGAGTGCAGTTTATTTGATGCTTCACGCCGGTGTGGTGCGTCAA
GGGCAGCAGCGTTGCAGAGCGCTGCAAGTGCCTCGGTTGTTTCACTTTTG
CCAGAAGCGATGGTCCAGTGTACGTAGAAGCGTGTGCTTTCGTTACCCTG
CGTATGTGTGTCCGCAGGTTACCGAAAGAGGAAGGTGTATTAGTTTGCTT
TTTTGGGTTGGTTTCACGCCTTGA
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