mRNA_L-elsbetiae_contig9230.18250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9230.18250.1
Unique NamemRNA_L-elsbetiae_contig9230.18250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE)

HSP 1 Score: 340 bits (873), Expect = 4.670e-112
Identity = 183/241 (75.93%), Postives = 203/241 (84.23%), Query Frame = 1 
Query:   67 MATGDVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDL-GGDSEDPPPGPAGT 786
            MA+GDVKYWD SYGKTLD L+ F+ T+ES  G  RE A+SEAS SLKRLAGMRRSYNLEIKL+KDP  KAHYNLEKSQKD+R+ TLQ+RF+AAK SG S RD+LFGGRRDVESG A  +SAEAKL EADQYQDKTE AYKNMIGVL+ETE TAD TAVELTNQREQL RITED   IDS+LTRADRLVKVFSKRMMTDKFIQCFGCLN+ AM+AII+YV+   V+L GGD  D P   AG+
Sbjct:    1 MASGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKASGDSTRDELFGGRRDVESGEAQGKSAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDPAAGS 241
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BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.610e-54
Identity = 110/232 (47.41%), Postives = 153/232 (65.95%), Query Frame = 1 
Query:   76 GDVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKES-GQSKRDQLFGGRRDVESGGAAE----RSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDLGGDS 756
            GDVKYWD SYGK LD+L   V  V+    + +E+ I+ A+ +++RL GM+RSYNLEIKL++D   KA Y  EK+ KDA+   L+A+ E AK     S +  LF GR       AAE    ++A+ KLD+A+  Q+KTE  YKN+I VL++TE+    TA  L  QR Q+  ITE+ + +D MLTRA++L+ VFS+R+ TDK IQCF  +N+ A++AII+YV+  NV L G S
Sbjct:    2 GDVKYWDTSYGKALDELSDQVKAVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGR-------AAEEPKVKTADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKMIQCFAFINVAALVAIIVYVVIKNVGLPGSS 226
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A835Z325_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z325_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.000e-43
Identity = 105/239 (43.93%), Postives = 146/239 (61.09%), Query Frame = 1 
Query:   76 GDVKYWDNSYGKTLDDLEVFVGTV-ESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAA--KESGQSKRDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDLGGD-SEDPPPGPA 780
            GD+++WD +YG  LD LE  +  V E+   S R+   S A+++++RL G++RSYNLEIKL +D   KA Y   K+ KDAR   L+A+ E A  K   +++R  LF GR  +E   AA+    AKLD+A   QDKTE  YKNM+ VL +TE+     A  L +QR Q+  I ED   +   LTRA +L+ VF KR+ TDKFIQCFG +N+  ++ II+YV+     L    + +PPP PA
Sbjct:    2 GDLQFWDGNYGNVLDGLESQLHQVREAYTPSDRDQLASTAASTVRRLQGIKRSYNLEIKLTRDTGLKAMYTDAKAAKDARLEQLEAQLEEARRKPGREAERAALFDGRA-IEMAPAAD----AKLDQASAIQDKTEARYKNMVTVLAQTEEIGTAAAASLADQRTQMVAIDEDVKVMHENLTRAGKLLHVFGKRLATDKFIQCFGFVNVALLVGIILYVVITKTGLSSSGASNPPPTPA 235
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A7S2V573_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V573_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.030e-25
Identity = 78/235 (33.19%), Postives = 124/235 (52.77%), Query Frame = 1 
Query:   82 VKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGA---AERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDLGGDSEDPPPGP 777
            ++YWD      +D  E     ++ +D  T   A  E  + L+   G+++S+  E++LL D   + HY ++  + + R   L  R   ++E+   +++ L  G +    GG    ++   +A L +A++ QD  E+AY      L E  Q A  T  EL NQRE++  ITE A  ID +LTRADRL++ F +RM TD+ IQ F  +N   +LA+IIY I ++ +L G S    P P
Sbjct:    1 MEYWDERINSLIDQGEREAEKLD-MDNETAMEACQEIEHCLQSAKGVKQSFTTELRLLGDKVEEQHYKMKLRRYEERMSALTERLNGSREA--IEKEHLMRGAQQRRGGGGFGDSDDPNDAMLGKAEKLQDDIEDAYGRAENDLDEIRQLAPETLAELRNQREKIQDITETAERIDDLLTRADRLLRTFGRRMATDRLIQVFFFINACLLLAVIIYAIVSDSNLTGGSGSKAPDP 232
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BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.390e-24
Identity = 77/243 (31.69%), Postives = 129/243 (53.09%), Query Frame = 1 
Query:   31 ALPLPAGRWIAAMATGDVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDLGGDSE 759
            ALP   G       + D+ YW +SY  ++DD +  V ++ + +   R S I  A   LKR  G+++SY LE++LL+D   K +Y     + D R   L+ R E  +E  +++R  L    ++  +     +  +  LD+A   QDKTE   +    +++ +++    T  EL  Q++Q+  ++ D + I+  L+RADRL++ F+KRMMTDK I  F  LN+ A+  II+Y +     LG D +
Sbjct:   46 ALPHTPGTPPRRTMSTDIDYWSDSYRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRRVEEHRE--RTERSTLL---QETPAAFGEHKGNDYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKLIMGFAFLNMCALTGIIVYCVVTGKVLGDDKK 283
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: W7TW41_9STRA (Soluble nsf attachment protein receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW41_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.340e-24
Identity = 75/247 (30.36%), Postives = 130/247 (52.63%), Query Frame = 1 
Query:   79 DVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKL-LKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGAAERSA--EAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDLGGDSEDPPPGPAGTEV*PRAGG 810
            D++YWD      L +LE  +G ++S+ G  +E+ I+++  +LKR+  +++ YN E+++ LK+   +  Y  +    D R   L+   + AK     K   LF G +  +  G    +A  +  L EA + QDKTE + ++ +G+++ ++Q    T  E+  Q+EQ+  IT+    ++  LTRAD+L++ F +R+ TDKFIQ F  LN   ++ II++       +       PP P   EV    GG
Sbjct:    3 DIEYWDGELSSKLAELEQTIGNLKSMRGGDKEAGIAKSEATLKRVREVKKGYNYEMRMSLKNDPRRHEYAEKLKAVDERIAALETELKWAKTEANKK--SLFKGSKGADGSGTLNENATNDTYLTEAKKIQDKTEASLQSALGMVEASKQVGANTVDEVNRQKEQIAEITDTVEAMEDGLTRADKLIRAFGRRIATDKFIQFFFVLNFGLLVGIIVWYAVKKGKVRAPEIHAPPMPTFDEVFGSGGG 247
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A7S1FMQ8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMQ8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.720e-23
Identity = 70/220 (31.82%), Postives = 119/220 (54.09%), Query Frame = 1 
Query:   76 GDVKYWDNSYGKTLDDLEVFVGTVESVDGS---TRESAISEASNSLKRLAGMRRSYNLEIKLLKD-PASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYV 723
            GD++YW +S+   L  L   +  ++ V        +SAI  A + LK+ + +++SY LE++L+   P  K  Y  +  + +        + + AK   Q  R +L  G  +   G   ER  +  L EA + QDKT+E+      ++ E+++    T  EL  QR Q+ R+T+D + I+  L RA++L+K F +RM TDKFIQCF C+NI+ +L ++ ++
Sbjct:    2 GDIEYWRDSFQSELSTLPEIIRDIDRVRKKGPYAIQSAIRNAEDQLKKCSNIQKSYKLELRLMVGMPVEKKKYENDLQELENELRECNDKLDDAKARAQ--RSELMSGANNE--GPDPERDGDQMLMEAGKIQDKTKESLMTTQNLIHESKEVGVTTLEELNRQRNQIVRVTDDVMAIEGELARAEKLIKTFGRRMATDKFIQCFTCVNILLLLGVVCFI 217
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: B8BZJ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ7_THAPS)

HSP 1 Score: 107 bits (268), Expect = 4.300e-23
Identity = 69/213 (32.39%), Postives = 113/213 (53.05%), Query Frame = 1 
Query:  169 RESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGG-------AAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANNVDL-GGDSEDPPPGPAG 783
            + S +  A   L+   G ++SY +E +L+ DP  K  Y  + S+      +     +A K  G  +R +LF G R   S G       + E + ++ L + +  QDKT+ +  N   ++  +++  + T  EL  QREQ+  +  +A+ I+  L RAD+L+K F KRM TD+FIQCF C+NI+ ++ ++IY I     L GG++E  P  P G
Sbjct:    3 KASTLDRAEKKLRAANGTKKSYKMETRLVADPNQKRMYENKLSRLSEELSSCANDLKAMK--GGMQRGELFVGARGKSSRGGGEYGEMSGEEAGDSMLSDMNNIQDKTKNSLANTKHMVAASKEVGEATMEELLRQREQIRNVDNEAMRIEDNLQRADKLIKTFGKRMATDRFIQCFACINILLLVGVVIYTILKKGSLTGGENEGAPASPVG 213
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A7S2P5B9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5B9_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.220e-22
Identity = 67/219 (30.59%), Postives = 112/219 (51.14%), Query Frame = 1 
Query:   79 DVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVIANN 735
            D++YW+ +  + ++DL   +G V +  GS ++    EA   L+   G +RSY LE++++K+   +  Y  +    + +   L    +  K S  + +D L  G    ++G   E+  +A ++EA   QDKT+ +      ++ E++     T   L  QR Q+ RI   A      L RAD L+K FSKRM  DKFIQC  C+NI   + +I+++I  N
Sbjct:    3 DIEYWEETLKEEIEDLSTVLGLVVAQTGSKQKQKFDEADKKLRDANGTKRSYKLEMRVIKNATQRKMYEKQLKDHETKLKALADHLKNLKSS--ATKDTLLEG---ADTGRTPEQEGDAMMNEARNTQDKTQTSLDRTKQLVAESKDIGQNTLATLEEQRAQIERIDAHADRTMENLGRADLLIKNFSKRMANDKFIQCCACINISLFIGVILFLIFKN 216
[Close]
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Match: A0A7S2FIE2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FIE2_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.670e-20
Identity = 61/216 (28.24%), Postives = 108/216 (50.00%), Query Frame = 1 
Query:   79 DVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLAGMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSKRDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETEQTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKFIQCFGCLNIVAMLAIIIYVI 726
            D+ YWD SY + ++D++  +  +E +D       +  A   +K +   + S+ +E++ L D   +  Y   K   D                      +L GG  D   GG      ++ L +  Q QD+TE + +N I +++   + AD T  EL  Q++Q+  ITE  + ++  +  AD+L++ FSKRMMTDK IQ F  +N++A++ +I++ I
Sbjct:    3 DIAYWDQSYREAIEDVDRILAEMEGLDTEEASQKLKAAKTKMKVVKKKKTSFQMELRQLHDDTQRTTYGERKQ--DXXXXXXXXXXXXXXXXXXXXXAELLGGASD---GGQVRMDNDSYLAKTHQIQDQTEASLQNTIEMMENANEVADETISELDRQKQQINEITEQLLTMEDNIKYADQLIRDFSKRMMTDKCIQIFAMMNMLALVVVIVFAI 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9230.18250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KVH9_9PHAE4.670e-11275.93t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z1V1_9STRA1.610e-5447.41Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A835Z325_9STRA1.000e-4343.93Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2V573_9STRA3.030e-2533.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4A3K9_9STRA1.390e-2431.69Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
W7TW41_9STRA2.340e-2430.36Soluble nsf attachment protein receptor n=2 Tax=Mo... [more]
A0A7S1FMQ8_9STRA1.720e-2331.82Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8BZJ7_THAPS4.300e-2332.39Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2P5B9_9STRA3.220e-2230.59Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2FIE2_9STRA8.670e-2028.24Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9230contigL-elsbetiae_contig9230:1435..7131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog35128.Thaps4535
Hectar predicted targeting categoryother localisation
EggNOG OGs29I5R@1,2RRCR@2759,2XCW0@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002310.1
Exons6
Model size1518
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9230.18250.1prot_L-elsbetiae_contig9230.18250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9230 2158..7065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.6200712-UTR-L-elsbetiae_contig9230:1434..21571622816995.6200712-UTR-L-elsbetiae_contig9230:1434..2157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9230 1435..2157 -
1691683969.4880133-UTR-L-elsbetiae_contig9230:1434..21571691683969.4880133-UTR-L-elsbetiae_contig9230:1434..2157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9230 1435..2157 -
1622816995.6954389-UTR-L-elsbetiae_contig9230:7065..71311622816995.6954389-UTR-L-elsbetiae_contig9230:7065..7131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9230 7066..7131 -
1691683969.5648837-UTR-L-elsbetiae_contig9230:7065..71311691683969.5648837-UTR-L-elsbetiae_contig9230:7065..7131Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9230 7066..7131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816995.6309595-CDS-L-elsbetiae_contig9230:2157..22891622816995.6309595-CDS-L-elsbetiae_contig9230:2157..2289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 2158..2289 -
1691683969.5017736-CDS-L-elsbetiae_contig9230:2157..22891691683969.5017736-CDS-L-elsbetiae_contig9230:2157..2289Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 2158..2289 -
1622816995.6414146-CDS-L-elsbetiae_contig9230:2763..29401622816995.6414146-CDS-L-elsbetiae_contig9230:2763..2940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 2764..2940 -
1691683969.5139942-CDS-L-elsbetiae_contig9230:2763..29401691683969.5139942-CDS-L-elsbetiae_contig9230:2763..2940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 2764..2940 -
1622816995.6514776-CDS-L-elsbetiae_contig9230:3867..40051622816995.6514776-CDS-L-elsbetiae_contig9230:3867..4005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 3868..4005 -
1691683969.5246365-CDS-L-elsbetiae_contig9230:3867..40051691683969.5246365-CDS-L-elsbetiae_contig9230:3867..4005Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 3868..4005 -
1622816995.6637404-CDS-L-elsbetiae_contig9230:4475..45501622816995.6637404-CDS-L-elsbetiae_contig9230:4475..4550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 4476..4550 -
1691683969.5341163-CDS-L-elsbetiae_contig9230:4475..45501691683969.5341163-CDS-L-elsbetiae_contig9230:4475..4550Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 4476..4550 -
1622816995.673434-CDS-L-elsbetiae_contig9230:5362..55241622816995.673434-CDS-L-elsbetiae_contig9230:5362..5524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 5363..5524 -
1691683969.5429409-CDS-L-elsbetiae_contig9230:5362..55241691683969.5429409-CDS-L-elsbetiae_contig9230:5362..5524Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 5363..5524 -
1622816995.6852424-CDS-L-elsbetiae_contig9230:7020..70651622816995.6852424-CDS-L-elsbetiae_contig9230:7020..7065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 7021..7065 -
1691683969.55251-CDS-L-elsbetiae_contig9230:7020..70651691683969.55251-CDS-L-elsbetiae_contig9230:7020..7065Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9230 7021..7065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9230.18250.1

>prot_L-elsbetiae_contig9230.18250.1 ID=prot_L-elsbetiae_contig9230.18250.1|Name=mRNA_L-elsbetiae_contig9230.18250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
MATGDVKYWDNSYGKTLDDLEVFVGTVESVDGSTRESAISEASNSLKRLA
GMRRSYNLEIKLLKDPASKAHYNLEKSQKDARFMTLQARFEAAKESGQSK
RDQLFGGRRDVESGGAAERSAEAKLDEADQYQDKTEEAYKNMIGVLKETE
QTADGTAVELTNQREQLGRITEDAINIDSMLTRADRLVKVFSKRMMTDKF
IQCFGCLNIVAMLAIIIYVIANNVDLGGDSEDPPPGPAGTEV*
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mRNA from alignment at L-elsbetiae_contig9230:1435..7131-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9230.18250.1 ID=mRNA_L-elsbetiae_contig9230.18250.1|Name=mRNA_L-elsbetiae_contig9230.18250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5697bp|location=Sequence derived from alignment at L-elsbetiae_contig9230:1435..7131- (Laminarionema elsbetiae ELsaHSoW15)
TTGAGGTTGTGAGGGGTGGGAAGCTTGTTCGCGCTCCCCTTGCCAGCTGG
GCGTTGGATCGCAGCCATGGCGACCGGTGACGTCAAGTATTGGGATAACA
GCTATGGCAAGGTGGGGTGTGGGATGGAAGAAGCGCGACGTCTCGCGCAG
GCGTCGCTCCCGTAGAACATGAAATGGCATCCTTGGAGTTGGCAGTGCGA
GCCTAGATAGCTTCCGCACCTTAGGCCTCTCTTATGTTGGTGAACCGTGT
GTAGATGATAATAGCCCGTGTCGTCGTTCCTATTTTTTTTACCAAAAACA
TGCCATTTGTATATTTAGCAGTCTCCGCGCCGCGGCCTCAATTGTCTCAA
TTTTCGCGCCGGGCGTGACCGCATCACTACCAGTACTACCAATAGGACGT
ATGATCCGTGCACAACAAGTTGTCAAAAAAATTCCAGGCGGGGATTACAA
CATTTCACTGCACACAGGTGGTTGTTCCGAAATCCGAAAGTACCGGCAAA
CGCCCTGTCTCCAGGCGCATCTTGAGACGGAGATATATATACTTTATATA
TTGTTGTACATACATAAGTACTTTTTGTTTTTTTGTTTTTTTGAAATATT
ATGAACTGATGCGGAGATATCGCCCAAAAACTGGATGTGGAGGGTCAACT
TGAATTATTTTATGAGATAATTGACCAGCCGATTTCAAAATAGAGTGCGG
CAAACGATTCCTCTCATCAATCCCTTCATGGGTATACTACGTATTTCTGG
GTTTTCCTGGGAAAAATCGGGTTGCCGAGAAAATCCGCATTTTGTTTTGC
AGTTTCCGACGGGGCTCCGTGATATCGAAGGGTGTTCCGTGGCAAGTACA
GGGGGCTTCGTGAGGCGAAAAGCGGCCGAAAATGTTGGACTTAGGCAATT
TCAAAAAAAATCTCTGCAGCTAAATATCGACGCAGTTTTTCGAGGCGGTC
ACGAATATCGTTGTTTCACGTTACAAATATGTTTCTAACAAAAGTTACCG
CAAAATACGCGATTGGACAAATTGTTTTGCACGAACCATATCTCACTTAG
TTCTGGCCCTTTACAACAGTAGTTCCTGCTCAATATTTTCGAGTGGCGGC
GCGGGGGCACTGGGGAATACGTTGATGATATCATGATATCTACCTAGTCG
ATGAACAATACTGGGGATACTGGTGGTTACTTATGCTCCTGTCGAAATAT
ATATCCCTGCTGATCAGGCATGAATTATTGGTCTAAAAAATACGCCCTGC
ATACAGAAGTACATGCAGTCGCGTTCCTCATAATTCGACTGGCCAACGTG
ACGGCAGAGGGGAATCATGATGATGGAAAATCTGGCATGACGCCCGGCCG
AGAGAATTGTACCGACGGACTGCAGCACCTCATTGTGTTTTTTATACGAC
CGTTGAAAGACGAAAAGGATTGTGAGCACAGGGAAGCCCTCTTGAAAGCA
CCTACTACACGCTCTATCTATACACCCCAAGCAGTTTGATGTCTTCACAG
TATTTTCTTGCCTGGATCCGTAGCAAGTACCAACTCGCACTTCAAACGTG
CGATATTTCGCTCCCTGAACTCTAAACACAAACACACGAAACCCACTTCT
TATGCAGACTCTGGACGACCTGGAAGTGTTTGTCGGCACCGTGGAGTCGG
TGGATGGAAGCACGCGGGAAAGTGCCATCTCGGAAGCCTCGAACTCGTTG
AAACGCCTCGCTGGCATGAGGAGGAGCTACAACCTCGAGATCAAGCTCCT
CAAAGATCCCGCCTCCAAGGTGTGTCACTAAACCTCGCCACACCCGCAGA
GTGCGCGCGCGCATGTAGATGAGGCGAGGATCACAGAATGCGTTGGGCAC
TGCTGTCTCGTGCTTTTTGTTTGTGCCGACGCCAACGTGTTTCGTCCTGT
AGCTCTCCTCTCTTTGCAATGCGGTCGTTCATGTCTGGAGGTTTTGCTTC
TCGAGGCGTCGCCCGAATCTGTTGCGTGCAGTGTAGCGCACAGCGTACGA
ACCGAACCGCAGACAATGCTTTTGCACTGTACCCGGAGTACCCGGTGCAT
TCGATGCTCGCGACTTGGCTGCCGAGCACGTTGTAATATGTAGCCTTTTT
TTTCCCCTTGTGATGTCGTGTTTTTCGGGATACGCGACGGGTGGGTGCCT
CCGAATGAAAGCCAGTCGTGACTTCTTTTGTAATCGGCTGCGCACCCTTT
CACGCCAAGTCGTCGATGATCGCGACCGTACCGCGTGAACCAACGCAGCG
TAAGGCAGTATGATCTGACCCACAAGGCCTTCTTGCCCCTTCGACTCAAC
GAGGTAGCGAAGCGTGTATTCTACGACCTCTTCCCACCCTGTTCTAAATT
TACCATGCAGTTTTTTGGCTCGCGGCCGCGGCGCCTCCACCGCAGAGACA
ACACCTTTTGGGGGGAGGAATGTCTGGGCCGTTGGTCCCACCGCGTATTG
TCGCTGCCGGTCGACTCTTTCGTATCTAACTCTCACGGTGTCCATGTGTA
CCGTCCATCACGCTAGTCCTCTTGGCTTGGTTTGCCTTGACGTCCCGCCC
GCAACTCACCCTCCCTCCCTTCCTCCCGCAGGCGCACTACAACTTGGAAA
AATCGCAGAAGGACGCTCGCTTCATGACGCTTCAAGCCAGGTTCGAAGCT
GCCAAGGTGCGTGTTTTTGCCTCCGGGTGGGTCGTGCGCGGGTTCTGTCT
GGTGCGTGTGGCGTGGTGGGGTGCCTGTCGCAGGGTCTCGAAGAGACCTA
CGGTAGTTGCTGTGGTGGTATCCTGTTTTTAGGGCTGCTGCAGGGGAGCG
TGAAGTTGGCTGGATCGGCACCCGGGTTCTCTGACGGAAGCACGCGGCCG
GCTGCCGTGTTGTCGAGAAAACGAAACTGCTTCCCGGTAAAAGGATTCTG
CCATCGGCCGTGAGTCGGCATCATGCTCGGATAATGGTCCGAAAGGCGAA
CCCTCTTCGTTGCATGTGTACTCCCGTGTGGATGGGCGTTTGGTTTGCGC
TCAGTTTTTGCCCCCCGTCCTATCCCTCCCATCCCATCCCATCCCATCGA
TTGCGGAACAACCCCCGGTCCGGCTGGTCGATCGTCGTGTCGATCCGAAC
GGACTGGACTATCCACCCTCTCTCAGGAGAGCGGGCAAAGCAAGCGAGAC
CAGCTGTTCGGGGGGCGAAGAGACGTGGAGAGCGGAGGGGCGGCGGAGAG
ATCTGCCGAGGCGAAGCTGGACGAGGCTGACCAATACCAGGACAAGACGG
AGGAGGCTTACAAGGTGCGATATAACACGTAATTTAGTTTACACGCGAAA
AAAGGGAATGAGCTGCCTGTGTGTGTACATACTTCGTTTCGTACATATGT
GTGGTACTTTTCTCTTATGAAAGCGTGTGGGTTTGTCTCTCAGCGATTCC
ATACGTGGTTTGGGGGGTTGTTGCTTAACATGTATTTTTATTGTGTGATT
TGTGTACGTTTTTTTTTAACATGGATTGTTCACTGTCGGTGCGCAGCTGC
ATCGCCGGTGGTTCGTACTGCGCCAGTTTGGCTACGGCTGCAAAACTTAG
GGAAAATGTCTAGACATGTCTACGTTGGTTGTGTTTTCACAGCAGCACGG
CGGGTTTGTCACAGCTGCTCGTTTAGTTTGTTGTGCTGTCGGTCACACTT
GAATTACTGCAGTGCAAAACGTGTTCCCAGCACTCGAAGTTTTGGGTCAA
GTGTTGAAGAACTCAAGAAAATCACGCAGCAGTAAGGCTGCGGCCTTGTC
TTGGTTAAGGGACAACGCATTGGTACTGTCAGCGATGTGCGTGCTCTGGT
AGATGAAAGCTCTCAGACCGTTGCACTACGACGCTTGTATCGTACCCCCC
TGTATAAATACGATCCTACTTTGTCGAAACAGACATCTGGTATGTATATA
CATGAAGCATATTTTTTTAAGCGTGCGACCGCAACAAGCTAATTTTGATG
CCGATCTCTCGGAGAACGATTTCAGGCCTCCCATGTCACTCGCCAGTGAG
GCCAACCCGTACGGGATGCACCCCTCGGCCGCCCACTGGTTCTAGCGTTG
CTTTCTCTCATCTTAAGCTGTGCAGTAGCGACGACGGTTCGGCGCTGATT
GCCCGCGTACCCCCTGGCTATTTTTCTCTATTTCGTGATGAAATGACGGT
GGAACCCCTGTGTGCGCCCTGGAAAAATGGACTCCAAATAGAACATGATC
GGGGTACTGAAGGAGACGGAACAGACGGCGGATGGCACCGCAGTGGAGCT
GACCAACCAGCGCGAGCAGCTGGGCCGCATCACGGAGGACGCGATCAATA
TCGACTCGATGTTGACAAGAGCGGACCGCCTGGTGAAGGTCTTCTCCAAG
CGGATGATGACGGACAAGGTGAATGCTAACGTCGTGCGCATATGCAATTG
CTGTACCGAGCGAGGCCTTGGTGAATATTCGCAGTACATACGTGGGTTCA
CCTAACTTTTGAAGCTGCTCTTTGGCCTTCGACGCCCCTGCAGTGGAGGT
TTATTTCGTGAGTTTTGTTTGCCGTGTCGGTAACCTGCTAGTGTTTGCGC
CATGGGCCCACTCGGAGTGAAGGTGCCTGCAGCAATGGCCCGGGTCTCAA
CTTGGTTCCTGCAAAAAATCAACCCAGCACGTCTGGCGGATGGCTAGGAA
TGTGTACAGCAGAGGAGTTGTTCTTCTTGCTATATATGTGCATATCGTGG
AAAGTATTCCAGAAACATGTCCTATTTACCGTGCCCCCTTCCCCCGTCCG
TACCACGCTTTACTCGTGAACGCGGGCTCGCTACTCACGCCTTTGTCTCT
TTGGGTCTCCCCTGCCTCTGCTCCTGCTACCTACCTCTGCAGTTTATCCA
ATGTTTCGGGTGCTTGAACATCGTCGCGATGTTGGCAATCATCATCTACG
TAATCGCGAACAACGTTGACCTCGGAGGCGATAGCGAAGATCCACCCCCG
GGTCCAGCCGGGACGGAGGTGTGACCCCGTGCTGGTGGTGGATCGGGACA
TGTCTTTGCGCCATTTGTCCGTCGCCACTTGGCACAGCTTTTACACGCGG
AATGGGGAAGGACTTGATCAAGGGCAGGGGGTGTCGCGTCGACAAAGTGA
TACAAGCCGGGGTTGCTCGCACGTTCACTGATTTGGGAGTGCTGATCTTC
AAGGCGTTGGCGTAATTGTTTTGGGTATTTGCGTAGATATGTGTGGCCAC
TGGACTGTTTTCGGTGCCGACAAAAGTGCGGAGTGATTTGCCTGACGTTT
TTTTTTGTCTAGATAAATGCTCTGTCGTGGATCCTGTTGGCCATAATGTT
TTTTGTTGTTCAGTTCTCTTGTTTTTTTCCCAGTGAAATACCGTACGGTA
CAAGTAAGTTTGTGGGGATCGTAACACTAGGGTATTTGCGAAATCAAGTA
GTTGTTATTTTTTTTATGGTTCTCCTCACACATATTTGCAGCAGAGATTC
GACGTGCGATAAGCAAAAAAAAAATTCTCGGGAATTTTTCGAATCCTGGA
TGTGGCATCTTCTTGCACGAGGGGGGGACCGAAGAGCAGCAAGTACCTAG
GCGCAGGAGGTCGCCTTGGCGGAAACGAAAGTTTTGCCAACAACGCGCTT
CGTCCCTGGTGATGGAAGCACAAGTCATCTCCGCGCACGAATATAATAAC
TGTACGATCGATTCTCTCAGATCCTCCAGCGTCGCCATCGTTGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9230:1435..7131-

>mRNA_L-elsbetiae_contig9230.18250.1 ID=mRNA_L-elsbetiae_contig9230.18250.1|Name=mRNA_L-elsbetiae_contig9230.18250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig9230:1435..7131- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACCGGTGACGTCAAGTATTGGGATAACAGCTATGGCAAGATGGC
GACCGGTGACGTCAAGTATTGGGATAACAGCTATGGCAAGACTCTGGACG
ACCTGGAAGTGTTTGTCGGCACCGTGGAGTCGGTGGATGGAAGCACGCGG
GAAAGTGCCATCTCGGAAGCCTCGAACTCGTTGAAACGCCTCGCTGGCAT
GAGGAGGAGCTACAACCTCGAGATCAAGCTCCTCAAAGATCCCGCCTCCA
AGACTCTGGACGACCTGGAAGTGTTTGTCGGCACCGTGGAGTCGGTGGAT
GGAAGCACGCGGGAAAGTGCCATCTCGGAAGCCTCGAACTCGTTGAAACG
CCTCGCTGGCATGAGGAGGAGCTACAACCTCGAGATCAAGCTCCTCAAAG
ATCCCGCCTCCAAGGCGCACTACAACTTGGAAAAATCGCAGAAGGACGCT
CGCTTCATGACGCTTCAAGCCAGGTTCGAAGCTGCCAAGGCGCACTACAA
CTTGGAAAAATCGCAGAAGGACGCTCGCTTCATGACGCTTCAAGCCAGGT
TCGAAGCTGCCAAGGAGAGCGGGCAAAGCAAGCGAGACCAGCTGTTCGGG
GGGCGAAGAGACGTGGAGAGCGGAGGGGCGGCGGAGAGATCTGCCGAGGC
GAAGCTGGACGAGGCTGACCAATACCAGGACAAGACGGAGGAGGCTTACA
AGGAGAGCGGGCAAAGCAAGCGAGACCAGCTGTTCGGGGGGCGAAGAGAC
GTGGAGAGCGGAGGGGCGGCGGAGAGATCTGCCGAGGCGAAGCTGGACGA
GGCTGACCAATACCAGGACAAGACGGAGGAGGCTTACAAGAACATGATCG
GGGTACTGAAGGAGACGGAACAGACGGCGGATGGCACCGCAGTGGAGCTG
ACCAACCAGCGCGAGCAGCTGGGCCGCATCACGGAGGACGCGATCAATAT
CGACTCGATGTTGACAAGAGCGGACCGCCTGGTGAAGGTCTTCTCCAAGC
GGATGATGACGGACAAGAACATGATCGGGGTACTGAAGGAGACGGAACAG
ACGGCGGATGGCACCGCAGTGGAGCTGACCAACCAGCGCGAGCAGCTGGG
CCGCATCACGGAGGACGCGATCAATATCGACTCGATGTTGACAAGAGCGG
ACCGCCTGGTGAAGGTCTTCTCCAAGCGGATGATGACGGACAAGTTTATC
CAATGTTTCGGGTGCTTGAACATCGTCGCGATGTTGGCAATCATCATCTA
CGTAATCGCGAACAACGTTGACCTCGGAGGCGATAGCGAAGATCCACCCC
CGGGTCCAGCCGGGACGGAGGTGTGATTTATCCAATGTTTCGGGTGCTTG
AACATCGTCGCGATGTTGGCAATCATCATCTACGTAATCGCGAACAACGT
TGACCTCGGAGGCGATAGCGAAGATCCACCCCCGGGTCCAGCCGGGACGG
AGGTGTGA
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