mRNA_L-elsbetiae_contig9214.18234.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9214.18234.1
Unique NamemRNA_L-elsbetiae_contig9214.18234.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9214.18234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9214contigL-elsbetiae_contig9214:2123..2788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size666
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.5572484-CDS-L-elsbetiae_contig9214:2122..26201622816994.5572484-CDS-L-elsbetiae_contig9214:2122..2620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9214 2123..2620 +
1691683968.7346485-CDS-L-elsbetiae_contig9214:2122..26201691683968.7346485-CDS-L-elsbetiae_contig9214:2122..2620Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9214 2123..2620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816994.5709097-UTR-L-elsbetiae_contig9214:2620..27881622816994.5709097-UTR-L-elsbetiae_contig9214:2620..2788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9214 2621..2788 +
1691683968.74667-UTR-L-elsbetiae_contig9214:2620..27881691683968.74667-UTR-L-elsbetiae_contig9214:2620..2788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9214 2621..2788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9214.18234.1prot_L-elsbetiae_contig9214.18234.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9214 2123..2620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9214.18234.1

>prot_L-elsbetiae_contig9214.18234.1 ID=prot_L-elsbetiae_contig9214.18234.1|Name=mRNA_L-elsbetiae_contig9214.18234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MSTTLRGHVDNTPWACRQKVPASLKGGKIEKLTRRVTDSLCTSPRLSGQL
AYSHAAKATATLAWETCTYRDWEIERIPRSSFVPANSLLDDDTRTFYAQR
DNIPGEANSSPSHPPPPSAPSKPVNQNHAINLQHNYTDTSLPMVVSDRHP
PFVLFQSHFFYRIYQ*
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mRNA from alignment at L-elsbetiae_contig9214:2123..2788+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9214.18234.1 ID=mRNA_L-elsbetiae_contig9214.18234.1|Name=mRNA_L-elsbetiae_contig9214.18234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig9214:2123..2788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACAACACTCCGTGGGCATGTCGACAACACTCCGTGGGCATGTCG
ACAAAAGGTGCCAGCAAGCTTGAAAGGTGGAAAAATTGAAAAATTAACCC
GTCGTGTCACTGACTCTCTTTGCACCTCTCCACGTCTATCTGGTCAGCTA
GCTTATTCCCACGCAGCTAAAGCTACCGCAACACTCGCTTGGGAAACTTG
CACATACAGAGATTGGGAAATTGAACGCATTCCTCGTTCTTCGTTCGTGC
CCGCCAACTCGCTTTTGGATGACGACACCCGCACTTTTTATGCACAACGG
GACAACATTCCCGGGGAAGCAAACTCTTCGCCCTCTCATCCGCCCCCCCC
CTCCGCGCCTTCCAAGCCAGTCAACCAAAACCACGCGATCAACCTGCAGC
ACAATTACACGGACACCTCCCTCCCTATGGTAGTATCCGATAGACACCCC
CCCTTCGTCCTGTTTCAATCCCACTTCTTCTATCGTATTTACCAGTAAAA
ACCCGACGGCAACCAAATTAGCTAATATTATACGAATTATGTACTCCTAT
ATATTATCATTATCTCTATAAATAGCCCGCGTCCGGTATGAACTGTTGGA
AACTCGAAACCTGCTGCGACTGAAACGAACATCCGACAGGCATTTTGTTT
GGCTCCTTGCTCTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9214:2123..2788+

>mRNA_L-elsbetiae_contig9214.18234.1 ID=mRNA_L-elsbetiae_contig9214.18234.1|Name=mRNA_L-elsbetiae_contig9214.18234.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig9214:2123..2788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGACAACACTCCGTGGGCATGTCGACAACACTCCGTGGGCATGTCG
ACAAAAGGTGCCAGCAAGCTTGAAAGGTGGAAAAATTGAAAAATTAACCC
GTCGTGTCACTGACTCTCTTTGCACCTCTCCACGTCTATCTGGTCAGCTA
GCTTATTCCCACGCAGCTAAAGCTACCGCAACACTCGCTTGGGAAACTTG
CACATACAGAGATTGGGAAATTGAACGCATTCCTCGTTCTTCGTTCGTGC
CCGCCAACTCGCTTTTGGATGACGACACCCGCACTTTTTATGCACAACGG
GACAACATTCCCGGGGAAGCAAACTCTTCGCCCTCTCATCCGCCCCCCCC
CTCCGCGCCTTCCAAGCCAGTCAACCAAAACCACGCGATCAACCTGCAGC
ACAATTACACGGACACCTCCCTCCCTATGGTAGTATCCGATAGACACCCC
CCCTTCGTCCTGTTTCAATCCCACTTCTTCTATCGTATTTACCAGTAAAT
GTCGACAACACTCCGTGGGCATGTCGACAACACTCCGTGGGCATGTCGAC
AAAAGGTGCCAGCAAGCTTGAAAGGTGGAAAAATTGAAAAATTAACCCGT
CGTGTCACTGACTCTCTTTGCACCTCTCCACGTCTATCTGGTCAGCTAGC
TTATTCCCACGCAGCTAAAGCTACCGCAACACTCGCTTGGGAAACTTGCA
CATACAGAGATTGGGAAATTGAACGCATTCCTCGTTCTTCGTTCGTGCCC
GCCAACTCGCTTTTGGATGACGACACCCGCACTTTTTATGCACAACGGGA
CAACATTCCCGGGGAAGCAAACTCTTCGCCCTCTCATCCGCCCCCCCCCT
CCGCGCCTTCCAAGCCAGTCAACCAAAACCACGCGATCAACCTGCAGCAC
AATTACACGGACACCTCCCTCCCTATGGTAGTATCCGATAGACACCCCCC
CTTCGTCCTGTTTCAATCCCACTTCTTCTATCGTATTTACCAGTAA
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