mRNA_L-elsbetiae_contig917.18191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig917.18191.1
Unique NamemRNA_L-elsbetiae_contig917.18191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig917.18191.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI)

HSP 1 Score: 896 bits (2316), Expect = 5.720e-314
Identity = 514/941 (54.62%), Postives = 620/941 (65.89%), Query Frame = 1
Query:    1 MDNLLPALANIDVTSNEFRESALPYQQWEAQRTHNTPTTPSDVGHLLPPIGGRKPRRDSSGNPLP-VPPHIEPSPPRPAPVDRNLLDLYDPALDPSPIGKEERGAMQPVRISRIVPRPESLSADKDSRGVKQPDKLPTSATLVTVLNGHRTQRSREDWVSTPGSD-----------EENCIDIFVEGFSSGIDHATLLPAELLCRTLQNGSQGPPNLSSPFPGETPHPLNAREGSLGLTVLLARTGEWFDAVDDVVQASRTEQPMQVNTSKAS-QDNDLLAANTNNTQTMFQREDGKPGLPRNAFRVQFEPGPLGIELEEHPGQQGIVQVRQVLQAGQAELDGRLSAGCFVVAVGDWGESSSSAPHHSTPSDNSPDSTPFATVCVTSGADDGGSLDVSGLRSSASGGGSSAKAHKPAIIRSLVEFEEAVSTRRSDRLFVIWALDRQAPEALAALGSPDSKRVRTMPHEWSSESLYARFQK---GYGEGSYSSGYERQQHFDPLNASSLRRPNNLDESTKPVALEGAPGWESGSAFGYGKDSLEYSLSSTNGLEVVSYDRIRPREEEGG--LRIRGAQSKGNVSPPAFVSPEGTTGGE------------TRSVSGEKHRINRLKIGERASTGWEFETGGGMFDEDDQGIAARRHPASKQVIVGATASTADEAENK-PPFPLGLQASMVDEFAVFIWFYNSHESASMNVSWIDYDGNRVARRSLAPGACYFERSFATHPWVIHCDDRIHCGQHEDLSKNDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQECCVVRLGDAMALARLTGSLIWNPTGRTLSIAKQAKISVPGMSVAAHADIGSNEMDGAGLNPGMKRLCMTGPRREAEEARARAGRAAVRKEKANILQEMKTWRAHPLSGVEATVGGVGDDGQIAEGALGRLGQGVPNLRVVMIGSSNWSE 2730
            M+NLLP +A IDVTSN FRE++LPYQQWE +RTH+TPTTPS+VGHLLPPIGGRKPRRD SG+ LP + P++EPS P PAPVDRN   LYDPALDPSPIGKEERG +QPVRISRIVPR +S     + +G  +  + P   T VTVLNGHRTQ  R D  S P  D           EE CID+FVEGFS GIDH TLLP+E+ CR LQ+GSQGPP  SS  P ++ H L+ REG LGLTV LART EW   +D  VQ  + ++P++      S +D+  LA  T  T  +FQREDG P   RNAFRVQFEPGPLG+ELEE+PG++GIV+VR+VLQAGQAELDGRLSAGC +VAVG W E+S++       +  +      A      G D  G+LDV  LRSSA  GGS AK+H+ AIIRSL +FEEAVS R  DRLFV+WALDR APEA+AALG P +  V T+P  WS  SLY+R +    G   G++  G ERQ+ F+   AS+  +    +E T P    GAPGWE+ ++   G+DSL YSLSS    ++ S  R +     GG  L+      + +++  AF SP+  TG E            +R   G   R    + G R++ GWEFETGGG+FD+ DQG+AAR+HP   Q  +   A+ ADE E K P FPLGL++S VD+ AVFIWF N+HESA M VSWI+YDG RV RRSLAPGACYFERSFATHPWVI   D  H G     +   +                             + E CVVRLGDAMALA+ TGSLIWNPTGRTLSI KQA++ VPGMS AA A +G+   DG GL+PGMKR CM G RREAEEARARA RA VR+EKA +L+EMK WR HPL G     GG+G  G +AEG  G+LGQGVPNLRVVM+G S WSE
Sbjct:    1 MENLLPVVAGIDVTSNHFRETSLPYQQWETKRTHHTPTTPSEVGHLLPPIGGRKPRRDESGSSLPPISPYVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRIVPRQDSGLGALELQGAARSAEGPHIPTAVTVLNGHRTQHMR-DRTSAPAGDCASAADVLSEDEERCIDVFVEGFSRGIDHETLLPSEMFCRALQHGSQGPPKPSSLIPEDSRHYLDVREGYLGLTVFLARTSEWSGTIDGGVQGEKQDEPIEPGIGDESDRDDRKLATETEITHMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDEASANGALRPNTASGA-----GAGHVALDGVDIYGNLDVPALRSSAMDGGSGAKSHESAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPRGWSPASLYSRRRNEGGGRARGAFPPGSERQRPFE---ASTSPKWQGYEE-TVPA---GAPGWETATSLARGRDSLGYSLSSDR-PKLASSPRNQASHAAGGGQLQAXXXXREADLATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFG--EGGARSAQGWEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEHSDSNHYGNRSLHAGGQQEEKRESTGSGAPAPLQPSPPREAGDDD--DAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGG-----GGLGAGGGVAEGLGGKLGQGVPNLRVVMMGLSGWSE 918          
BLAST of mRNA_L-elsbetiae_contig917.18191.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE)

HSP 1 Score: 820 bits (2119), Expect = 9.630e-284
Identity = 498/958 (51.98%), Postives = 600/958 (62.63%), Query Frame = 1
Query:   85 EAQRTHNTPTTPSDVGHLLPPIGGRKPRRDSSGNPLP-VPPHIEPSPPRPAPVDRNLLDLYDPALDPSPIGKEERGAMQPVRISRIVPRPES-LSADKDSRGVKQPDKLPTSATLVTVLNGHRTQRSREDWVSTPGSD-----------EENCIDIFVEGFSSGIDHATLLPAELLCRTLQNGSQGPPNLSSPFPGETPHPLNAREGSLGLTVLLARTGEWFDAVDDVVQASRTEQPMQVNTSKASQDNDLLAANTNNTQTMFQREDGKPGLPRNAFRVQFEPGPLGIELEEHPGQQGIVQVRQVLQAGQAELDGRLSAGCFVVAVGDWGESSSSAPHHSTPSDNSPDSTPFATVCVTSGADDGGSLDVSGLRSSASGGGSSAKAHKPAIIRSLVEFEEAVSTRRSDRLFVIWALDRQAPEALAALGSPDSKRVRTMPHEWSSESLYARFQ---KGYGEGSYSSGYERQQHFDPLNASSLRRPNNLDESTKPVALEGAPGWESGSAFGYGKDSLEYSLSSTNGLEVVSYDRIRPREEEGG--LRIRGAQSKGNVSPPAFVSPEGTTGGETRSVSGEKHRINRL------------KIGE---RASTGWEFETGGGMFDEDDQGIAARRHPASKQVIVGATASTADEAENKPP-FPLGLQASMVDEFAVFIWFYNSHESASMNV------------------------------------------SWIDYDGNRVARRSLAPGACYFERSFATHPWVIHCDDRIHCGQHEDLSKNDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQECCVVRLGDAMALARLTGSLIWNPTGRTLSIAKQAKISVPGMSVAAHADIGSNEMDGAGLNPGMKRLCMTGPRREAEEARARAGRAAVRKEKANILQEMKTWRAHPLSGVEATVGGVGDDGQIAEGALGRLGQGVPNLRVVMIGSSNWSE 2730
            + +RTH+TPTTPSDVGHLLPPIGGRKPRRD SG+ LP +PP +EPS P PAPVDRN   LYDPALDPSPIGKEERG +QPVRISR+VPR +S L A +     +  + LP   T+VTVLNG+ TQ  R D  S P  D           EE+CID+FVEGFS G+DH TLLP+E+ CR LQ+GSQGPP  SS    ++ H L+ REG LGLTV LART EW   +D  VQ  + ++ ++            LAA    T+ +FQREDG P   RNAFRVQFEPGPLG+ELEE+PG +GIV+VR+VLQAGQAELDGRLSAGC +VAVG W ESS++      PS  S   T      V  G D  G+LDV  LRSSA  GGS A+AHK AIIRSL +FEEAVS R  DRLFV+WALDR APEA+AALG P +  V T+P  WS  S+Y+R +   +G   G++ SG ERQ+ F+   AS   +    +ES      EGA G E+ +     +DSL YSLSS    ++ S+ R +     GG  L+  G Q + +++  AF SP+  TG E R  +G    INRL            + GE   R + GWEFETGGG+FD+DDQG+AAR+HPA +Q  +   A+ ADEAE KPP FPLGL++S VD+ AVFIWF N+HESA M V                                          SWIDYDG RV RRSLAPGACYFERSFATHPWVI   D    G ++                                    + E CVVRLGD MA+A+ TGSLIWNPTGRTLSI KQA++ VPGMS AA A +G+   +G GL+PGMKRLCM G RREAEEARARA RA VR+EKA +L+E+K WR HPL G     GG+G  G +AEG  G+LGQGVPNLRVVM+GS  WSE
Sbjct:   23 QTKRTHHTPTTPSDVGHLLPPIGGRKPRRDGSGSSLPPIPPCVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRVVPRQDSGLGAQELQGEARSAEGLPIP-TVVTVLNGYNTQH-RRDRTSAPAGDYASATHVLSEDEESCIDVFVEGFSRGVDHETLLPSEMFCRALQHGSQGPPKPSSLISEDSRHYLDVREGYLGLTVFLARTSEWSGTIDGGVQGEKQDECIEPGIGDGK-----LAAEMAITRMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDESSANGTLR--PSTASGAGTGHV---VLDGVDIYGNLDVPALRSSAMDGGSGAEAHKSAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPRGWSPASVYSRRRNEGRGRVRGTFPSGSERQRPFE---ASKSPKSQGYEESEP----EGALGRETTTILARSRDSLRYSLSSDR-PKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSE-RLAAG----INRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSDSNQAGSNDRSLHAGGQQEEKCEPTGSGAPVPLKPSPPREAGDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGG-----GGLGAGGGVAEGLGGKLGQGVPNLRVVMMGSG-WSE 949          
BLAST of mRNA_L-elsbetiae_contig917.18191.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.030e-13
Identity = 64/216 (29.63%), Postives = 84/216 (38.89%), Query Frame = 1
Query: 1804 GWEFETGGGMF-------------------DEDDQGIAARRHPASKQVIVGATASTADEAENKPPFPLGLQASMVDEFAVFIWFYNSHESASMNVSWIDYDGNRVARRSLAPGACYFERSFATHPWVIHCDDRIHCGQHEDLSKNDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQECCVVRLG-DAMAL-ARLTGSLIWNPTGRTLSIAKQAK 2388
            GW F TGGG+                    D DD G  A R   S+  +  ++ S           PL + AS  D   VF+ F N+H +  + V W+DY G  V RR L PG  YFERSFA+HPW++        G                                         EC  VR G DA+A  A L    +W+P  R++S+  QAK
Sbjct:  466 GWGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVRRSEGAVPASSQSPXXXXXXXLSLPLSMGASKADVAPVFLCFSNAHATMKLRVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQAMGPSGTGS--------------------------------------GSECVAVRCGADAVAAGAGLAFCAMWDPLRRSVSVMPQAK 643          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig917.18191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7E5_ECTSI5.720e-31454.62VHL domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JVY5_9PHAE9.630e-28451.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGW3_9STRA2.030e-1329.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig917contigL-elsbetiae_contig917:691..4483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionvon Hippel-Lindau disease tumour suppressor, beta/alpha domain
Ec32 orthologEc-21_005310.1
Exons3
Model size2733
Cds size2733
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig917.18191.1prot_L-elsbetiae_contig917.18191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig917 691..4483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.7568705-CDS-L-elsbetiae_contig917:690..13951622816990.7568705-CDS-L-elsbetiae_contig917:690..1395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig917 691..1395 -
1691683965.9078875-CDS-L-elsbetiae_contig917:690..13951691683965.9078875-CDS-L-elsbetiae_contig917:690..1395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig917 691..1395 -
1622816990.7678366-CDS-L-elsbetiae_contig917:1904..38451622816990.7678366-CDS-L-elsbetiae_contig917:1904..3845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig917 1905..3845 -
1691683965.9280775-CDS-L-elsbetiae_contig917:1904..38451691683965.9280775-CDS-L-elsbetiae_contig917:1904..3845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig917 1905..3845 -
1622816990.7788985-CDS-L-elsbetiae_contig917:4396..44831622816990.7788985-CDS-L-elsbetiae_contig917:4396..4483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig917 4397..4483 -
1691683965.9408848-CDS-L-elsbetiae_contig917:4396..44831691683965.9408848-CDS-L-elsbetiae_contig917:4396..4483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig917 4397..4483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig917.18191.1

>prot_L-elsbetiae_contig917.18191.1 ID=prot_L-elsbetiae_contig917.18191.1|Name=mRNA_L-elsbetiae_contig917.18191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=911bp
MDNLLPALANIDVTSNEFRESALPYQQWEAQRTHNTPTTPSDVGHLLPPI
GGRKPRRDSSGNPLPVPPHIEPSPPRPAPVDRNLLDLYDPALDPSPIGKE
ERGAMQPVRISRIVPRPESLSADKDSRGVKQPDKLPTSATLVTVLNGHRT
QRSREDWVSTPGSDEENCIDIFVEGFSSGIDHATLLPAELLCRTLQNGSQ
GPPNLSSPFPGETPHPLNAREGSLGLTVLLARTGEWFDAVDDVVQASRTE
QPMQVNTSKASQDNDLLAANTNNTQTMFQREDGKPGLPRNAFRVQFEPGP
LGIELEEHPGQQGIVQVRQVLQAGQAELDGRLSAGCFVVAVGDWGESSSS
APHHSTPSDNSPDSTPFATVCVTSGADDGGSLDVSGLRSSASGGGSSAKA
HKPAIIRSLVEFEEAVSTRRSDRLFVIWALDRQAPEALAALGSPDSKRVR
TMPHEWSSESLYARFQKGYGEGSYSSGYERQQHFDPLNASSLRRPNNLDE
STKPVALEGAPGWESGSAFGYGKDSLEYSLSSTNGLEVVSYDRIRPREEE
GGLRIRGAQSKGNVSPPAFVSPEGTTGGETRSVSGEKHRINRLKIGERAS
TGWEFETGGGMFDEDDQGIAARRHPASKQVIVGATASTADEAENKPPFPL
GLQASMVDEFAVFIWFYNSHESASMNVSWIDYDGNRVARRSLAPGACYFE
RSFATHPWVIHCDDRIHCGQHEDLSKNDEEGGGGFRNRGDQHSQQRQEQS
PPPQRAHDEQECCVVRLGDAMALARLTGSLIWNPTGRTLSIAKQAKISVP
GMSVAAHADIGSNEMDGAGLNPGMKRLCMTGPRREAEEARARAGRAAVRK
EKANILQEMKTWRAHPLSGVEATVGGVGDDGQIAEGALGRLGQGVPNLRV
VMIGSSNWSE*
back to top

mRNA from alignment at L-elsbetiae_contig917:691..4483-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig917.18191.1 ID=mRNA_L-elsbetiae_contig917.18191.1|Name=mRNA_L-elsbetiae_contig917.18191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3793bp|location=Sequence derived from alignment at L-elsbetiae_contig917:691..4483- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAATCTTCTACCAGCCCTTGCTAATATCGATGTGACCAGCAACGA ATTCCGAGAGTCGGCCTTGCCGTATCAGCAGTGGGAGGTGAGGAAGATGG ATATTTGGAACCGATGCCGTACCGGCCCGAATGGTCTGTATGTAGCCCCT CGTATTTCACGATGGCGTGTCTATCCGAAGTGTCTATGTATGTGGTGCGT CGTGTTTAGCACTCGTAAAAAAGGCGTGCGTTGTTTCTTCTGGACGAGGA TCCAAGTTACCGGATAGTCTACATCTGTATCTAGGGTCGAGAGACTAGAT ACAGGCACTGGGTGACTTCCGCCTTTGTCTAGATGCAATGATACTGCCCC ATGGCCAATACGGGGTATGCTTCTTATGGATTCAAAGTGTTTTTGAAGAA ACTGTGTGTCCTAGGCACACAGAAAAATCATCACCCCATTTGCTACAACG GTACCCCTAAAACGTCAGCTGTCAGCGTCCAAACGCGAAGGGGGTTTTAT GTATGTAGATCTGGATAAACTGAACTAAGTACCCGTACTACTTACTGCCG TCTTTCATCTCCGTACAGCAAAAAACACAAACCAGTAGGTCGGTATCAAA CTATCCTCGCTACACACCTGTAATCGCGATTATCACAGGCGCAGCGGACT CATAACACGCCGACCACGCCCTCGGATGTTGGCCATCTGCTGCCACCGAT TGGGGGTAGAAAGCCAAGGCGAGATAGTAGCGGTAATCCTCTGCCGGTTC CGCCGCATATCGAGCCCTCACCTCCACGCCCGGCACCTGTCGACCGCAAC CTTTTGGATTTATACGACCCAGCGCTCGATCCAAGCCCCATCGGCAAGGA GGAGAGGGGAGCGATGCAACCGGTACGAATCTCTCGAATCGTTCCACGCC CAGAATCATTGTCGGCAGACAAAGATTCGCGAGGAGTGAAACAGCCGGAT AAGCTCCCCACCAGTGCTACCTTGGTGACTGTTCTCAACGGGCACAGAAC ACAACGTTCAAGAGAAGACTGGGTATCCACTCCTGGTTCCGATGAAGAAA ACTGCATAGACATCTTTGTCGAAGGGTTTTCAAGCGGGATCGACCATGCG ACTCTGTTGCCTGCCGAACTGCTCTGTCGCACTCTTCAAAATGGAAGCCA GGGGCCACCGAACCTCTCCTCCCCTTTCCCAGGAGAAACACCACACCCCT TGAACGCCCGAGAAGGGAGCCTTGGTCTTACTGTTCTTCTGGCCCGTACG GGCGAATGGTTCGACGCGGTTGACGATGTTGTGCAAGCTTCACGAACAGA ACAACCCATGCAAGTAAACACCAGTAAAGCGAGCCAGGACAACGACCTAT TAGCTGCTAATACGAACAACACGCAAACGATGTTTCAGCGAGAAGACGGC AAGCCTGGTCTCCCACGCAACGCCTTTAGGGTGCAGTTCGAACCCGGACC GCTCGGCATCGAGCTAGAAGAACATCCCGGTCAACAGGGTATTGTCCAAG TTCGACAGGTGCTTCAAGCGGGGCAGGCTGAGCTGGACGGTCGACTGTCA GCGGGTTGCTTTGTAGTGGCGGTGGGGGACTGGGGCGAGTCGAGTTCAAG CGCCCCACATCATTCCACGCCCTCCGACAATTCACCCGACTCTACTCCCT TTGCTACTGTTTGTGTTACAAGCGGCGCCGATGATGGCGGCAGTCTTGAC GTTTCCGGCCTGAGATCAAGTGCAAGTGGAGGTGGTTCCAGTGCCAAAGC GCACAAACCTGCGATAATCCGTTCCCTGGTGGAGTTTGAAGAAGCGGTTT CAACCAGGCGATCTGACCGACTATTCGTTATTTGGGCTCTAGATCGACAG GCCCCGGAGGCGTTAGCTGCGCTAGGAAGCCCAGATTCGAAACGTGTGCG AACGATGCCCCATGAATGGTCGTCGGAGTCGTTGTATGCGAGGTTTCAAA AAGGATATGGAGAGGGCTCATACTCTAGCGGTTATGAGCGACAGCAACAT TTCGACCCCTTGAACGCGTCGAGCCTGCGACGGCCCAATAACCTTGACGA ATCGACCAAGCCAGTAGCGCTGGAAGGTGCTCCCGGGTGGGAGTCGGGTT CAGCGTTTGGTTACGGCAAGGACAGCCTCGAGTACTCCTTATCGAGTACC AATGGCCTAGAGGTGGTCTCATACGATCGAATTCGACCTCGGGAGGAAGA AGGTGGCCTGAGAATACGAGGAGCGCAATCGAAGGGTAATGTATCACCAC CAGCCTTCGTTTCCCCAGAAGGGACTACGGGAGGCGAGACGCGGTCAGTT TCCGGAGAGAAGCATCGTATAAACAGGCTCAAAATAGGAGAGAGGGCTTC GACAGGATGGGAATTTGAAACTGGTGGAGGAATGTTCGATGAAGATGACC AAGGAATTGCGGCTAGAAGGCACCCTGCTAGCAAGCAGGTCATCGTTGGA GCAACAGCGTCGACTGCCGATGAAGCGGAGAACAAGCCGCCGTTCCCGTT GGGACTTCAGGCATCGATGGTGGACGAGTTCGCCGTGTTTATCTGGTTCT ACAACAGCCACGAATCGGCCTCAATGAATGTGAGAAGTCTGGGCAAGGCC CGTAGCAAGCACGCATTGTCTAAGTCGATATATACTTCAAAGTAAGCGCC CTACAGAAAGAAAGCCTCTACAGCATGCCATCATGGCGCCGCTGCGTCAA AGCTGAATCTTCACCAACGGTTGGGTTTCTCATCGAACATCGTGCTGGTG CAAAGTGTGCTCGCCGCAAGGAGGGAGTTGCAGCCACTCAAACGGAAGGA GATACTATTGCTAAACTTCAGAATGTTTAAACGCACTGCATAGCCCACTT CGCGGGAAAATCACTCCCGCTACCGAACGTAGCGCAACCTTCCAAAGCAC AAGCCAACTCTTTGGGGGTGAGACTGGGCGATGGCTAGCCGTCCCACAGA GCACTTCAAAGTATTGGATCTAGTTAGACCTGGAGTTTAGTGCGGAGCTC GCCCAAGAGCCCTTTTCTCACCCCAGAGCCCTTCTATCAAGGCTCCAAAC TTCCACTTTCCGTGTTCTCCAACCATCCTCTTATTCAGGTGTCGTGGATC GACTACGATGGCAATCGCGTTGCGAGGAGATCGCTCGCGCCTGGGGCCTG CTACTTTGAGCGTTCGTTCGCTACTCATCCGTGGGTCATCCACTGCGACG ACCGCATTCACTGCGGTCAGCATGAAGACTTGAGCAAGAACGATGAGGAA GGCGGCGGCGGGTTTCGTAATAGAGGAGACCAGCACTCCCAGCAACGGCA AGAACAATCTCCGCCACCGCAACGGGCACACGACGAGCAAGAATGTTGCG TCGTTCGTCTTGGGGACGCTATGGCCCTGGCTCGGCTCACAGGCTCACTG ATTTGGAATCCGACGGGTAGGACGCTGTCGATCGCCAAGCAGGCGAAAAT TAGTGTACCGGGCATGAGCGTGGCGGCGCACGCGGACATAGGTTCGAACG AGATGGACGGTGCCGGGCTCAACCCCGGAATGAAACGGCTTTGTATGACG GGCCCTCGGAGAGAAGCCGAGGAGGCCCGTGCGAGGGCCGGCAGAGCGGC GGTTCGGAAAGAGAAGGCGAACATTTTGCAGGAGATGAAGACTTGGAGAG CACATCCACTCAGCGGGGTGGAAGCTACCGTGGGTGGGGTCGGTGATGAT GGGCAAATCGCGGAGGGGGCATTGGGACGGCTGGGTCAAGGCGTTCCGAA CCTTCGGGTGGTCATGATAGGATCTTCGAACTGGAGCGAGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig917:691..4483-

>mRNA_L-elsbetiae_contig917.18191.1 ID=mRNA_L-elsbetiae_contig917.18191.1|Name=mRNA_L-elsbetiae_contig917.18191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5466bp|location=Sequence derived from alignment at L-elsbetiae_contig917:691..4483- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAATCTTCTACCAGCCCTTGCTAATATCGATGTGACCAGCAACGA
ATTCCGAGAGTCGGCCTTGCCGTATCAGCAGTGGGAGATGGACAATCTTC
TACCAGCCCTTGCTAATATCGATGTGACCAGCAACGAATTCCGAGAGTCG
GCCTTGCCGTATCAGCAGTGGGAGGCGCAGCGGACTCATAACACGCCGAC
CACGCCCTCGGATGTTGGCCATCTGCTGCCACCGATTGGGGGTAGAAAGC
CAAGGCGAGATAGTAGCGGTAATCCTCTGCCGGTTCCGCCGCATATCGAG
CCCTCACCTCCACGCCCGGCACCTGTCGACCGCAACCTTTTGGATTTATA
CGACCCAGCGCTCGATCCAAGCCCCATCGGCAAGGAGGAGAGGGGAGCGA
TGCAACCGGTACGAATCTCTCGAATCGTTCCACGCCCAGAATCATTGTCG
GCAGACAAAGATTCGCGAGGAGTGAAACAGCCGGATAAGCTCCCCACCAG
TGCTACCTTGGTGACTGTTCTCAACGGGCACAGAACACAACGTTCAAGAG
AAGACTGGGTATCCACTCCTGGTTCCGATGAAGAAAACTGCATAGACATC
TTTGTCGAAGGGTTTTCAAGCGGGATCGACCATGCGACTCTGTTGCCTGC
CGAACTGCTCTGTCGCACTCTTCAAAATGGAAGCCAGGGGCCACCGAACC
TCTCCTCCCCTTTCCCAGGAGAAACACCACACCCCTTGAACGCCCGAGAA
GGGAGCCTTGGTCTTACTGTTCTTCTGGCCCGTACGGGCGAATGGTTCGA
CGCGGTTGACGATGTTGTGCAAGCTTCACGAACAGAACAACCCATGCAAG
TAAACACCAGTAAAGCGAGCCAGGACAACGACCTATTAGCTGCTAATACG
AACAACACGCAAACGATGTTTCAGCGAGAAGACGGCAAGCCTGGTCTCCC
ACGCAACGCCTTTAGGGTGCAGTTCGAACCCGGACCGCTCGGCATCGAGC
TAGAAGAACATCCCGGTCAACAGGGTATTGTCCAAGTTCGACAGGTGCTT
CAAGCGGGGCAGGCTGAGCTGGACGGTCGACTGTCAGCGGGTTGCTTTGT
AGTGGCGGTGGGGGACTGGGGCGAGTCGAGTTCAAGCGCCCCACATCATT
CCACGCCCTCCGACAATTCACCCGACTCTACTCCCTTTGCTACTGTTTGT
GTTACAAGCGGCGCCGATGATGGCGGCAGTCTTGACGTTTCCGGCCTGAG
ATCAAGTGCAAGTGGAGGTGGTTCCAGTGCCAAAGCGCACAAACCTGCGA
TAATCCGTTCCCTGGTGGAGTTTGAAGAAGCGGTTTCAACCAGGCGATCT
GACCGACTATTCGTTATTTGGGCTCTAGATCGACAGGCCCCGGAGGCGTT
AGCTGCGCTAGGAAGCCCAGATTCGAAACGTGTGCGAACGATGCCCCATG
AATGGTCGTCGGAGTCGTTGTATGCGAGGTTTCAAAAAGGATATGGAGAG
GGCTCATACTCTAGCGGTTATGAGCGACAGCAACATTTCGACCCCTTGAA
CGCGTCGAGCCTGCGACGGCCCAATAACCTTGACGAATCGACCAAGCCAG
TAGCGCTGGAAGGTGCTCCCGGGTGGGAGTCGGGTTCAGCGTTTGGTTAC
GGCAAGGACAGCCTCGAGTACTCCTTATCGAGTACCAATGGCCTAGAGGT
GGTCTCATACGATCGAATTCGACCTCGGGAGGAAGAAGGTGGCCTGAGAA
TACGAGGAGCGCAATCGAAGGGTAATGTATCACCACCAGCCTTCGTTTCC
CCAGAAGGGACTACGGGAGGCGAGACGCGGTCAGTTTCCGGAGAGAAGCA
TCGTATAAACAGGCTCAAAATAGGAGAGAGGGCTTCGACAGGATGGGAAT
TTGAAACTGGTGGAGGAATGTTCGATGAAGATGACCAAGGAATTGCGGCT
AGAAGGCACCCTGCTAGCAAGCAGGTCATCGTTGGAGCAACAGCGTCGAC
TGCCGATGAAGCGGAGAACAAGCCGCCGTTCCCGTTGGGACTTCAGGCAT
CGATGGTGGACGAGTTCGCCGTGTTTATCTGGTTCTACAACAGCCACGAA
TCGGCCTCAATGAATGCGCAGCGGACTCATAACACGCCGACCACGCCCTC
GGATGTTGGCCATCTGCTGCCACCGATTGGGGGTAGAAAGCCAAGGCGAG
ATAGTAGCGGTAATCCTCTGCCGGTTCCGCCGCATATCGAGCCCTCACCT
CCACGCCCGGCACCTGTCGACCGCAACCTTTTGGATTTATACGACCCAGC
GCTCGATCCAAGCCCCATCGGCAAGGAGGAGAGGGGAGCGATGCAACCGG
TACGAATCTCTCGAATCGTTCCACGCCCAGAATCATTGTCGGCAGACAAA
GATTCGCGAGGAGTGAAACAGCCGGATAAGCTCCCCACCAGTGCTACCTT
GGTGACTGTTCTCAACGGGCACAGAACACAACGTTCAAGAGAAGACTGGG
TATCCACTCCTGGTTCCGATGAAGAAAACTGCATAGACATCTTTGTCGAA
GGGTTTTCAAGCGGGATCGACCATGCGACTCTGTTGCCTGCCGAACTGCT
CTGTCGCACTCTTCAAAATGGAAGCCAGGGGCCACCGAACCTCTCCTCCC
CTTTCCCAGGAGAAACACCACACCCCTTGAACGCCCGAGAAGGGAGCCTT
GGTCTTACTGTTCTTCTGGCCCGTACGGGCGAATGGTTCGACGCGGTTGA
CGATGTTGTGCAAGCTTCACGAACAGAACAACCCATGCAAGTAAACACCA
GTAAAGCGAGCCAGGACAACGACCTATTAGCTGCTAATACGAACAACACG
CAAACGATGTTTCAGCGAGAAGACGGCAAGCCTGGTCTCCCACGCAACGC
CTTTAGGGTGCAGTTCGAACCCGGACCGCTCGGCATCGAGCTAGAAGAAC
ATCCCGGTCAACAGGGTATTGTCCAAGTTCGACAGGTGCTTCAAGCGGGG
CAGGCTGAGCTGGACGGTCGACTGTCAGCGGGTTGCTTTGTAGTGGCGGT
GGGGGACTGGGGCGAGTCGAGTTCAAGCGCCCCACATCATTCCACGCCCT
CCGACAATTCACCCGACTCTACTCCCTTTGCTACTGTTTGTGTTACAAGC
GGCGCCGATGATGGCGGCAGTCTTGACGTTTCCGGCCTGAGATCAAGTGC
AAGTGGAGGTGGTTCCAGTGCCAAAGCGCACAAACCTGCGATAATCCGTT
CCCTGGTGGAGTTTGAAGAAGCGGTTTCAACCAGGCGATCTGACCGACTA
TTCGTTATTTGGGCTCTAGATCGACAGGCCCCGGAGGCGTTAGCTGCGCT
AGGAAGCCCAGATTCGAAACGTGTGCGAACGATGCCCCATGAATGGTCGT
CGGAGTCGTTGTATGCGAGGTTTCAAAAAGGATATGGAGAGGGCTCATAC
TCTAGCGGTTATGAGCGACAGCAACATTTCGACCCCTTGAACGCGTCGAG
CCTGCGACGGCCCAATAACCTTGACGAATCGACCAAGCCAGTAGCGCTGG
AAGGTGCTCCCGGGTGGGAGTCGGGTTCAGCGTTTGGTTACGGCAAGGAC
AGCCTCGAGTACTCCTTATCGAGTACCAATGGCCTAGAGGTGGTCTCATA
CGATCGAATTCGACCTCGGGAGGAAGAAGGTGGCCTGAGAATACGAGGAG
CGCAATCGAAGGGTAATGTATCACCACCAGCCTTCGTTTCCCCAGAAGGG
ACTACGGGAGGCGAGACGCGGTCAGTTTCCGGAGAGAAGCATCGTATAAA
CAGGCTCAAAATAGGAGAGAGGGCTTCGACAGGATGGGAATTTGAAACTG
GTGGAGGAATGTTCGATGAAGATGACCAAGGAATTGCGGCTAGAAGGCAC
CCTGCTAGCAAGCAGGTCATCGTTGGAGCAACAGCGTCGACTGCCGATGA
AGCGGAGAACAAGCCGCCGTTCCCGTTGGGACTTCAGGCATCGATGGTGG
ACGAGTTCGCCGTGTTTATCTGGTTCTACAACAGCCACGAATCGGCCTCA
ATGAATGTGTCGTGGATCGACTACGATGGCAATCGCGTTGCGAGGAGATC
GCTCGCGCCTGGGGCCTGCTACTTTGAGCGTTCGTTCGCTACTCATCCGT
GGGTCATCCACTGCGACGACCGCATTCACTGCGGTCAGCATGAAGACTTG
AGCAAGAACGATGAGGAAGGCGGCGGCGGGTTTCGTAATAGAGGAGACCA
GCACTCCCAGCAACGGCAAGAACAATCTCCGCCACCGCAACGGGCACACG
ACGAGCAAGAATGTTGCGTCGTTCGTCTTGGGGACGCTATGGCCCTGGCT
CGGCTCACAGGCTCACTGATTTGGAATCCGACGGGTAGGACGCTGTCGAT
CGCCAAGCAGGCGAAAATTAGTGTACCGGGCATGAGCGTGGCGGCGCACG
CGGACATAGGTTCGAACGAGATGGACGGTGCCGGGCTCAACCCCGGAATG
AAACGGCTTTGTATGACGGGCCCTCGGAGAGAAGCCGAGGAGGCCCGTGC
GAGGGCCGGCAGAGCGGCGGTTCGGAAAGAGAAGGCGAACATTTTGCAGG
AGATGAAGACTTGGAGAGCACATCCACTCAGCGGGGTGGAAGCTACCGTG
GGTGGGGTCGGTGATGATGGGCAAATCGCGGAGGGGGCATTGGGACGGCT
GGGTCAAGGCGTTCCGAACCTTCGGGTGGTCATGATAGGATCTTCGAACT
GGAGCGAGTGAGTGTCGTGGATCGACTACGATGGCAATCGCGTTGCGAGG
AGATCGCTCGCGCCTGGGGCCTGCTACTTTGAGCGTTCGTTCGCTACTCA
TCCGTGGGTCATCCACTGCGACGACCGCATTCACTGCGGTCAGCATGAAG
ACTTGAGCAAGAACGATGAGGAAGGCGGCGGCGGGTTTCGTAATAGAGGA
GACCAGCACTCCCAGCAACGGCAAGAACAATCTCCGCCACCGCAACGGGC
ACACGACGAGCAAGAATGTTGCGTCGTTCGTCTTGGGGACGCTATGGCCC
TGGCTCGGCTCACAGGCTCACTGATTTGGAATCCGACGGGTAGGACGCTG
TCGATCGCCAAGCAGGCGAAAATTAGTGTACCGGGCATGAGCGTGGCGGC
GCACGCGGACATAGGTTCGAACGAGATGGACGGTGCCGGGCTCAACCCCG
GAATGAAACGGCTTTGTATGACGGGCCCTCGGAGAGAAGCCGAGGAGGCC
CGTGCGAGGGCCGGCAGAGCGGCGGTTCGGAAAGAGAAGGCGAACATTTT
GCAGGAGATGAAGACTTGGAGAGCACATCCACTCAGCGGGGTGGAAGCTA
CCGTGGGTGGGGTCGGTGATGATGGGCAAATCGCGGAGGGGGCATTGGGA
CGGCTGGGTCAAGGCGTTCCGAACCTTCGGGTGGTCATGATAGGATCTTC
GAACTGGAGCGAGTGA
back to top