mRNA_L-elsbetiae_contig9161.18186.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9161.18186.1
Unique NamemRNA_L-elsbetiae_contig9161.18186.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A6H5KA98_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA98_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 4.040e-44
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 2 
Query:    2 GGKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GGKSTILRL+CRFYDP  G ILLGGRDLS+YNPADISNVVS VTQEPQLFPISVRENIAYG+  GS+ ++ V++AA +ANIH+FV  LP+GYDTLVGE
Sbjct:   94 GGKSTILRLICRFYDPQGGSILLGGRDLSSYNPADISNVVSWVTQEPQLFPISVRENIAYGM--GSYSMEDVYKAAKSANIHNFVSELPEGYDTLVGE 189
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: D7G5Q1_ECTSI (ATP-binding cassette, sub-family B, member 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q1_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.680e-41
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 2 
Query:    2 GGKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GGKSTILRL+CRFYDP  G ILLGGRDLSTY PADISNVVS VTQEPQLFPISVRENIAYG+  GS+ ++ V++AA +ANIH+FV  LP+GYDTLVGE
Sbjct:  463 GGKSTILRLICRFYDPQGGSILLGGRDLSTYKPADISNVVSWVTQEPQLFPISVRENIAYGM--GSYSMEDVYKAAKSANIHNFVSELPEGYDTLVGE 558
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A7S2HIK7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HIK7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.800e-31
Identity = 59/98 (60.20%), Postives = 76/98 (77.55%), Query Frame = 2 
Query:    2 GGKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GGKST+LRLL   YDPDEG+IL+G RD+++   A++S  ++ VTQEPQLFPIS+ ENIAYGLP G + +D V +AA+ AN+ SFV  LP+GY T VGE
Sbjct:  497 GGKSTVLRLLLHLYDPDEGRILIGDRDVASIPQAELSQRIAMVTQEPQLFPISIAENIAYGLPEGCWTMDQVKRAAVLANVDSFVKNLPEGYATPVGE 594
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A2J6M127_LACSA (Uncharacterized protein n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6M127_LACSA)

HSP 1 Score: 112 bits (281), Expect = 6.190e-27
Identity = 56/97 (57.73%), Postives = 71/97 (73.20%), Query Frame = 2 
Query:    5 GKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GKSTI++LL RFY+P +G+I +GG DL T++ ++ + VVS V QEP LF +SV ENIAYGLP  +   D V  AA AAN H F+  LP+GYDTLVGE
Sbjct:  510 GKSTIVQLLARFYEPTQGRISVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSRDDVIAAAKAANAHDFIISLPEGYDTLVGE 606
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A2G9I9Y9_9LAMI (Peptide exporter, ABC superfamily n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9I9Y9_9LAMI)

HSP 1 Score: 112 bits (281), Expect = 6.200e-27
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 2 
Query:    5 GKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GKST+++LL RFY+P  G+I +GG DL +++ ++ + VVS V QEP LF +S+RENIAYGLP      D V +AA AAN H F+  LP GYDTLVGE
Sbjct:  516 GKSTVVQLLARFYEPTRGRITVGGEDLQSFDKSEWARVVSVVNQEPVLFSVSIRENIAYGLPDDYVSKDDVVKAARAANAHEFITSLPQGYDTLVGE 612
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A2H5NNJ9_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NNJ9_CITUN)

HSP 1 Score: 111 bits (278), Expect = 8.280e-27
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2 
Query:    5 GKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GKSTI++LL RFY+P  G+I +GG DL T++ ++ + VVS V QEP LF +SV ENIAYGLP  +   D + +AA AAN H F+  LP GYDTLVGE
Sbjct:  201 GKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGE 297
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A067F9G7_CITSI (Uncharacterized protein n=8 Tax=Citrus TaxID=2706 RepID=A0A067F9G7_CITSI)

HSP 1 Score: 111 bits (278), Expect = 1.600e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2 
Query:    5 GKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GKSTI++LL RFY+P  G+I +GG DL T++ ++ + VVS V QEP LF +SV ENIAYGLP  +   D + +AA AAN H F+  LP GYDTLVGE
Sbjct:  578 GKSTIVQLLARFYEPTGGRITVGGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSKDDIIKAAKAANAHDFIISLPQGYDTLVGE 674
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A4D9CVG1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVG1_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.180e-26
Identity = 54/98 (55.10%), Postives = 71/98 (72.45%), Query Frame = 2 
Query:    2 GGKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GGKST+LRLL R YD D G I L GRDL T++  ++SN V+ ++QEP L PIS+++NIAYGL  G+F    V  AA AANI+ FV  LPD ++T++GE
Sbjct:  547 GGKSTLLRLLARHYDVDAGSIFLDGRDLLTFSQEELSNKVAMLSQEPPLLPISIKDNIAYGLKPGTFSQADVEAAARAANIYDFVQSLPDRFETVIGE 644
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: UPI001CB94B8F (ABC transporter B family member 28 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB94B8F)

HSP 1 Score: 110 bits (276), Expect = 2.930e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2 
Query:    5 GKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GKSTI++LL RFY+P +G+I + G DL T++ ++ + VVS V QEP LF +SV ENIAYGLP  +   D V  AA AAN H F+  LP+GYDTLVGE
Sbjct:  501 GKSTIVQLLARFYEPTQGRITVAGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSRDDVIAAAKAANAHDFIISLPEGYDTLVGE 597
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BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Match: A0A2U1MYB0_ARTAN (Non-intrinsic ABC protein 8 n=3 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MYB0_ARTAN)

HSP 1 Score: 110 bits (276), Expect = 2.940e-26
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 2 
Query:    5 GKSTILRLLCRFYDPDEGKILLGGRDLSTYNPADISNVVSRVTQEPQLFPISVRENIAYGLPAGSFDVDVVHQAAIAANIHSFVCGLPDGYDTLVGE 295
            GKSTI++LL RFY+P +G+I + G DL T++ ++ + VVS V QEP LF +SV ENIAYGLP  +   D V  AA AAN H F+  LP+GYDTLVGE
Sbjct:  512 GKSTIVQLLARFYEPTQGRITVAGEDLRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDENVSRDDVIAAAKAANAHDFIISLPEGYDTLVGE 608
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9161.18186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA98_9PHAE4.040e-4477.55ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G5Q1_ECTSI2.680e-4177.55ATP-binding cassette, sub-family B, member 8 n=1 T... [more]
A0A7S2HIK7_9STRA3.800e-3160.20Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2J6M127_LACSA6.190e-2757.73Uncharacterized protein n=3 Tax=Lactuca TaxID=4235... [more]
A0A2G9I9Y9_9LAMI6.200e-2755.67Peptide exporter, ABC superfamily n=1 Tax=Handroan... [more]
A0A2H5NNJ9_CITUN8.280e-2756.70Uncharacterized protein n=1 Tax=Citrus unshiu TaxI... [more]
A0A067F9G7_CITSI1.600e-2656.70Uncharacterized protein n=8 Tax=Citrus TaxID=2706 ... [more]
A0A4D9CVG1_9STRA2.180e-2655.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI001CB94B8F2.930e-2656.70ABC transporter B family member 28 n=1 Tax=Erigero... [more]
A0A2U1MYB0_ARTAN2.940e-2656.70Non-intrinsic ABC protein 8 n=3 Tax=Artemisia annu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9161contigL-elsbetiae_contig9161:3716..6051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-01_004920.2
Exons4
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9161.18186.1prot_L-elsbetiae_contig9161.18186.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9161 3716..6051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816990.3857183-CDS-L-elsbetiae_contig9161:3715..37511622816990.3857183-CDS-L-elsbetiae_contig9161:3715..3751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 3716..3751 +
1691683965.6347191-CDS-L-elsbetiae_contig9161:3715..37511691683965.6347191-CDS-L-elsbetiae_contig9161:3715..3751Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 3716..3751 +
1622816990.3969257-CDS-L-elsbetiae_contig9161:4362..44871622816990.3969257-CDS-L-elsbetiae_contig9161:4362..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 4363..4487 +
1691683965.6461327-CDS-L-elsbetiae_contig9161:4362..44871691683965.6461327-CDS-L-elsbetiae_contig9161:4362..4487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 4363..4487 +
1622816990.4121518-CDS-L-elsbetiae_contig9161:4997..50851622816990.4121518-CDS-L-elsbetiae_contig9161:4997..5085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 4998..5085 +
1691683965.6580644-CDS-L-elsbetiae_contig9161:4997..50851691683965.6580644-CDS-L-elsbetiae_contig9161:4997..5085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 4998..5085 +
1622816990.4221144-CDS-L-elsbetiae_contig9161:6003..60511622816990.4221144-CDS-L-elsbetiae_contig9161:6003..6051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 6004..6051 +
1691683965.6752932-CDS-L-elsbetiae_contig9161:6003..60511691683965.6752932-CDS-L-elsbetiae_contig9161:6003..6051Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9161 6004..6051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9161.18186.1

>prot_L-elsbetiae_contig9161.18186.1 ID=prot_L-elsbetiae_contig9161.18186.1|Name=mRNA_L-elsbetiae_contig9161.18186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
GREVDNPPPLVQVLRSRRRQDSAGGAGFVHIQPGRHQQRRVEGNAGAAAV
PDISAGEYRVRPAGGVLRCRRRPPGGHSGQHTQFCLRAPGRIRYSRGGG
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mRNA from alignment at L-elsbetiae_contig9161:3716..6051+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9161.18186.1 ID=mRNA_L-elsbetiae_contig9161.18186.1|Name=mRNA_L-elsbetiae_contig9161.18186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2336bp|location=Sequence derived from alignment at L-elsbetiae_contig9161:3716..6051+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGGGAAGTCGACAATCCTCCGCCTCTTGTGCAGGTACGTGCACGTGC
GGTGGTAGACTCATTCGTCGACAGGACGTCGTGTACCATGGCACCGTTCA
CGGGCTCTCTACCGAAGGAGGCACAAGATACCACCACCCCCCTGGACAGA
TTTTCAAAGTTCGATTGAATACTCCGTAACGAAGAGGGTGCCAGCACCAA
ACGACGCTATTTCGGACAGCCCTCGCCTAGATGTTTCCAACGCCACCACC
TCCTTTCAGCACTGGCACTATTCTTGCTCGGGGAGGAACGAGTTTTAAAA
ATCTGTCCCAGGGGTGGTGTGGTGTCTGTGATGTGTCATCTACGTTATGT
ATGCATGTGCCGTCATTTTTTTTTTGAAGTAGCCGGAGGGGATGGATCGC
GGAGCTGGACCCAGAAGTGATGTGTGCTGGTTTCGAGCCGTTGTGGTCTG
CAGTGGAGCGGTGAATATGCTTGGTATGGTTTCCTCGCATACTGCTCCTG
TTTCCGGGGTGTTTCCTCACTGTCAAAGGTGCTGGTTTTGATTGCATTCC
ACTATTATTCCAAGTGTTTGACTCGCTCGGTGCTGGCGGTTGTATATGTA
ACTGTTTTTTTTTCTCTTCTATTTTTGTAGATGGATGTTGACGACAGGTT
TTACGATCCCGACGAAGGCAAGATTCTGCTGGGGGGGCGGGATTTGTCCA
CATACAACCCGGCAGACATCAGCAACGTCGTGTCGAGGGTAACGCAGGAG
CCGCAGCTGTTCCCGATATCAGGTACGGTATGTATGGCATGTACTTGGGT
GTCTCAAGTGCTTGACCTCGTTTTTCTCGATATATTTTTTCTTGCAGATT
GTACATATGGTAGAGAGCGGCTTTTCTGTGTGTCCTAGATCATACACAAG
GCCCCTACCGTGCCCCCACATGCCGTTCCTCGATGGTAACATCAACACAT
ACGCACGCAACACACGGTGCTGTTCGTGCGCATCGGCGCTGATTGCTGAA
GCCGGCTGCTTCTGCTGTGTCGTCGCTCATACACCCGTAAATACGTGCCG
CCTGGAGTCCAGCAGCCATCTCCACCCCCCGGCTCTCGCGCAACGTGCAA
GGTACATACATACATAAAAACGTCCTTCTTACTCCCATTTGGCGTCAATA
ATCGGCCTATTTTTTCGGTTTTTCCCTCCTCCCCGCCCCGGTCGCGCGTT
GTGTATGTTTGCCCTCTGTTTCTTCCATCCCATCCCGCCGGTGCATCATC
ATGGTCGATGATCGCTCTCTGGACGCCCGAAGTGCGGGAGAATATCGCGT
ACGGCCTGCCGGCGGGGTCCTTCGATGTCGACGTCGTCCACCAGGCGGCC
ATAGCGGCCAACATACACAGGTTGGGAGAGAGATGCATCTGTGACTCTTG
ACTTCCGTTTCCCGTGTGTGTGTGTAGTACAATGGCAGCCTGACCGACGT
GGAAGCCTGCAGTGGTCTCAGTTTAGAATATGTACATACAACACATACGA
AGTATATATCTAGACTAAACAATAAGTCTTCCTCACGCGGACCGATTTCC
ACGACTGATTGCTTCACATCAGCGAGGGCGGCAAACGTCCGAAATGTTCT
TGCTAAACCTTCTCCCTCGTGTTGTTGTTGTTGTTGTTTTCTTCATATTA
AAAACAGTTCCGATCTCTCATATCCAGTACACCTCCATATAAGTCCGTAC
TAGTCCAACACTGACGCGGTCGATTCCCGTGGTCACAGGATAACTTACCC
TGAAAAAATGGTATACTGAAAAAAGAGAAGATACAAGGAGAGCTGTTTTG
TTTTGCTTTCTTGCAGGGTGTGCGATCAAAGCCGAAGATGTACGGTAGTC
CGTATTACTGTTCACCAGAAGCCAGAAGGACGAAGTGGCCTAAAACCGAT
GCTCTGATGTAGTTGCAGGTCTCAACAGTCTCTGTGAAGCTTTCGTGCTC
ATTTTTCTTCTTCTTTTTGTTGTCGATTGCATATGTATCTATATCCAATT
TTATTGTATTTTTTTCTGGCGCTTTGCGGCCGCGATGATACCATCGTCGA
CTGTTTTTCTACTTGCCGTGCCCATCATCACAACACCGTTCGCGTTGCCT
TTTTCGTTATAGAAACCCATCGAGCGAGGTACAGCAGTATGTGCCTACTC
GAACGCCCCCACTCTTCTCCGCTGGGTTCTCCCCATACCTTCCTCCTGCA
TGGACCCCAAGGATACCCCGCAAAACTGCATCTGACGCGCGACGTGTTTC
GTGTTTTGTCGTCATGGCATGTGTATGTCGGACACCAGTTTTGTCTGCGG
GCTCCCGGACGGATACGATACTCTCGTGGGGGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9161:3716..6051+

>mRNA_L-elsbetiae_contig9161.18186.1 ID=mRNA_L-elsbetiae_contig9161.18186.1|Name=mRNA_L-elsbetiae_contig9161.18186.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig9161:3716..6051+ (Laminarionema elsbetiae ELsaHSoW15)
GGGAGGGAAGTCGACAATCCTCCGCCTCTTGTGCAGGGGAGGGAAGTCGA
CAATCCTCCGCCTCTTGTGCAGGTTTTACGATCCCGACGAAGGCAAGATT
CTGCTGGGGGGGCGGGATTTGTCCACATACAACCCGGCAGACATCAGCAA
CGTCGTGTCGAGGGTAACGCAGGAGCCGCAGCTGTTCCCGATATCAGGTT
TTACGATCCCGACGAAGGCAAGATTCTGCTGGGGGGGCGGGATTTGTCCA
CATACAACCCGGCAGACATCAGCAACGTCGTGTCGAGGGTAACGCAGGAG
CCGCAGCTGTTCCCGATATCAGTGCGGGAGAATATCGCGTACGGCCTGCC
GGCGGGGTCCTTCGATGTCGACGTCGTCCACCAGGCGGCCATAGCGGCCA
ACATACACAGTGCGGGAGAATATCGCGTACGGCCTGCCGGCGGGGTCCTT
CGATGTCGACGTCGTCCACCAGGCGGCCATAGCGGCCAACATACACAGTT
TTGTCTGCGGGCTCCCGGACGGATACGATACTCTCGTGGGGGAGGGTTTT
GTCTGCGGGCTCCCGGACGGATACGATACTCTCGTGGGGGAGGG
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