mRNA_L-elsbetiae_contig913.18158.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig913.18158.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE) HSP 1 Score: 448 bits (1153), Expect = 1.050e-132 Identity = 400/867 (46.14%), Postives = 482/867 (55.59%), Query Frame = 3
Query: 3 GGKGLKSSRRPALMFLAQAVLSFVGVVVLPTRLAYEVLVVRPPAASGGG-----------VGAAAVSLNLRTGLEGRHGGRRLGDSQGSGIWAGEREREGEREDGEGL---RAAGSKGRVLQAAGDDERFTYATRTQFHLCAALPGSVITEGALRAGIVDAFGVEEVQTEGIVGVVERRDSSELCSNSGASEEWMVAIGNEDAEDQSAAAISANQMELVRSLNFTTDLAASLNSNPDFPATDVTAAGLTFNSLGYIVLYDEEQEVAPASTRDT-SDFVPFRGPDQWWPXXXXXLFGLAFLCCICPLAACIWHFRPGHSGPPSPSGAGGGPGMFGKXXXXXXXXXXKAVGGGD---DPDWDMMKQYKKGAVG---GDKDEGVFNDAATGISADSPSEYVNPMSVYTGGDS-TGAEGSVGREKTSGEWPEALMESGVGVTGVDYTS--QGASSAKHTQQGDEASVL--SEADRAAGSDPGRYEHDP--AAVSVNPLVTSASFNPTASSSRVAGGAGGAMGASDSTSSFGGSNSAMDSAPPGSDASW--AHKASLAGXXXXXXXXXXXXXXXXXXXXX-GPSGRTLGNAAAALGEEDGGGGSDFGGT------------QSALSYRT-DDSAGARSTSTLAALEAKAEAEAYEAELADHAESGXXXXXXXXXXXXXA--------------GLPPSGRSSGALRSSDANPQDPASSGTSTTRSRAGSGSSAGGVDEL--REFTDQDRQQRMEESDAARAASLLRGSSFKVPLQPDLERAITEQEQERRRAAVQAVEASRGPIAADTTEESADTG------AGAAXXXXXXXXXXXXXXXXXXXXGATPPQS-LMGKVVVGMGMG--RFFG 2396
GGK RRPAL+F+AQAVLSFVG+VVLPTR+AY+VL+ S G +GL + AG + R + D + FTY +RTQF LCAA PGS + E ALRAGI+D F VE+ QTEG G VE+R+ +E C + SEEW +AIGNE ++ QSAA ISA QMELVRS FTT LA+SL + V AGLT++SLGYIVLYDE+Q V A++ SDFV FRGPDQWWP XXX LFGL LCCICPLAACI+++RPG +GPPSPSGAGGGPGMFG K +G G + DW + +QY+ GDKD FNDAATGIS SP E V + +GGDS T + + + SGEWPEA+ ESGVG TGV YTS +G +S+ +QQGDEA+ + +EADRAAG DP R EHD +A+S+ PLVTS SFNP AS S GG MG DS +S ++S+ +ASW + K G GPSGRTLG+AAAALGEED + G+ QSA+SYRT D SA +STSTLA L+AK E XXXXXXXXXXXXX GLPPSGRSS S + PAS RSRA S SS+ DEL R+ T+++ Q R+E+++AARAAS+LRGSSFK PLQPDLERAI +EQERRR AVQAVEAS P + E D G A A ++P + MGKVV GMGMG R FG
Sbjct: 78 GGKEGTGGRRPALVFVAQAVLSFVGMVVLPTRVAYDVLLQPRVFESHRGEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGLVSSKKAGWRSRRVLQTDDGDSFTYTSRTQFDLCAA-PGSELEEDALRAGIMDVFEVEQEQTEGTTGTVEKREVTEFCDD--GSEEWTIAIGNEPSDTQSAAVISAGQMELVRSSEFTTLLASSLEDSN----LSVNPAGLTYSSLGYIVLYDEDQAVTTANSDSLDSDFVAFRGPDQWWPWXXXLLFGLVLLCCICPLAACIYYYRPGLAGPPSPSGAGGGPGMFG---GSTRGGTRKEIGRGXXXXNADW-ITQQYEXXXXXXGYGDKD---FNDAATGISVYSPQEEV--ATSASGGDSATVVQAAESPQVASGEWPEAI-ESGVGTTGVTYTSTSRGGASSVASQQGDEATAVQSAEADRAAGVDPSRREHDTTTSALSIKPLVTSGSFNPAASGSGDGRVPGGYMG--DSAAS-------LESSQKSREASWGVSRKTVTPGDSGLLEATEEADEGDSPAPLISGPSGRTLGSAAAALGEEDSQDEDERIGSXXXXXXXXXXXXQSAVSYRTADGSASVQSTSTLAPLDAKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPGLPPSGRSSSNSSSRIQSVDHPAS---RAVRSRAASNSSS--ADELSQRDLTEEEHQMRVEDAEAARAASVLRGSSFKTPLQPDLERAIAVEEQERRRQAVQAVEASLAPDSGTGAAEPVDLGSPADLPAEAVTAAIAASATGDTEKEGGASVSSSPAATGFMGKVVAGMGMGMSRIFG 913
BLAST of mRNA_L-elsbetiae_contig913.18158.1 vs. uniprot
Match: D7FU95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU95_ECTSI) HSP 1 Score: 372 bits (955), Expect = 1.600e-106 Identity = 359/854 (42.04%), Postives = 428/854 (50.12%), Query Frame = 3
Query: 81 VVLPTRLAYEVLVVRP------------------PAASGGGVGAA-AVSLNLRTGLEGRHGGRR-LGDSQGSGIWAGEREREGEREDG-EGL---RAAGSKGRVLQAAGDDERFTYATRTQFHLCAALPGSVITEGALRAGIVDAFGVEEVQTEGIVGVVERRDSSELCSNSGASEEWMVAIGNEDAEDQSAAAISANQMELVRSLNFTTDLAASLNSNPDFPATDVTAAGLTFNSLGYIVLYDEEQEVAPASTRDT-SDFVPFRGPDQWWPXXXXXLFGLAFLCCICPLAACIWHFRPGHSGPPSPSGAGGGPGMFGKXXXXXXXXXXKAVGGGDDPDWDMMKQYKKGAVG---GDKDEGVFNDAATGISADSPSEYVNPMSVYTGGDS-TGAEGSVGREKTSGEWPEALMESGVGVTGVDYTS--QGASSAKHTQQGDEASVL--SEADRAAGSDPGRYEHDPA--AVSVNPLVTSASFNPTASSS---RVAGGAGGAMGASDSTSSFGGSNSAMDSAPPGSDASW--AHKASLAGXXXXXXXXXXXXXXXXXXXXX-GPSGRTLGNAAAALGEEDG-------GGGSDFGGTQSALSYRTDDSAGARSTSTLAALEAKAEAEAYEAELADHA--------------------------ESGXXXXXXXXXXXXXAGLPPSGRSSGALRSSDANPQDPASSGTSTTRSRAGSGSSAGGVDEL--REFTDQDRQQRMEESDAARAASLLRGSSFKVPLQPDLERAITEQEQERRRAAVQAVEASRGPIAADTTEESADTGAGA---AXXXXXXXXXXXXXXXXXXXXGATPPQ----SLMGKVVVGMGMGRFF 2393
VVLPTR+AYEVL+ P P+A+G A + S L G GGRR L D R+G DG +GL + AG +GR + D FTY TRTQF LCAA PGS + E ALRAGI+D F VE+ QTEG G VE+R+ E C + SEEW +AIGNE ++ QSAA ISA QMELVRS FTT LAASL + V AGLT++SLGYIVLYDEEQ V A++ SDFV FRGPDQWWP GH+GPPSPSGAGGGPGMFG GGG + DW + +QY+KG GDKD FNDAATGIS SP + V + +G DS T + + E SGEWPEA MESGVG+TGV YTS +G +S +QQGDEA+ + +EADRAAG DP R EHD + A+S+NPLVTS SFNP AS S RV GG G S ++++S+ S+ASW + K G GPSGRTLG+AAAALG ED G GS G + XXXXXX GLPPSGRSS S + PAS RSRA S SS+ DEL R+ T+++RQ R+E+S+AARAAS+LRGSSFK PL PDLE AI ++Q+RRR AVQ +EASR P + E D G+ A A A P MGKVV GMGM RFF
Sbjct: 2 VVLPTRVAYEVLLQPPVFESHRGEPPPPLVSLAVPSATGSAASTAGSASRTLVKEGTGEGGGRRRLSDFS----------RDGGGSDGSDGLILSKKAGWRGRRVLQTDDSGSFTYTTRTQFDLCAA-PGSELEEDALRAGIMDVFEVEQEQTEGTAGTVEKREVMEFCDD--GSEEWTIAIGNEPSDTQSAAVISAGQMELVRSSEFTTLLAASLEDSN----LTVDPAGLTYSSLGYIVLYDEEQAVTAANSDSLDSDFVAFRGPDQWWP---------------------------GHAGPPSPSGAGGGPGMFGGSTRGGTGKEVGKGGGGGNADW-IAQQYEKGXXXXGYGDKD---FNDAATGISVYSPRDEV--ATSGSGVDSATVVQAAESPELASGEWPEA-MESGVGMTGVTYTSNSRGGASTVASQQGDEATAVQSAEADRAAGVDPSRREHDTSTSAISMNPLVTSDSFNPAASGSGDGRVPGGY------------IGDSAASLESSRKSSEASWGASRKTVTPGDSGLLETTEEAEEGESPAPLISGPSGRTLGSAAAALGGEDSQDEDGRIGSGSAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDGPAAVVXXXXXXTAVPGLPPSGRSSSNSSSRIQSVDYPAS---RVARSRAASNSSS--ADELSQRDLTEEERQMRVEDSEAARAASVLRGSSFKTPLHPDLEHAIAVEQQDRRRQAVQGLEASRAPDSGTGAAEPVDLGSPADLPAEVVAAAITAAAAGDAEKEGEAAASPSPAATGFMGKVVAGMGMSRFF 787
BLAST of mRNA_L-elsbetiae_contig913.18158.1 vs. uniprot
Match: A0A6H5KLU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU0_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 2.300e-6 Identity = 66/193 (34.20%), Postives = 76/193 (39.38%), Query Frame = 2
Query: 2726 GSLSPEQARAYSDNIDRTLG--ELPPAEGHDAVPMSELLARAEMEAKAXXXXXXXXXXXXXXX----------------------------------------------------------------AGSQAPALDIAGLLHNADVGGMTLDDLEASLASPVIATPPPLLRPNVGAAAREAASSRGRGLLQRN 3106
GS P A ++ R L ELPPAEG+DAVPMSELLA AEM AK XX A SQAP DIA LL NA++GGM LDDLEASL S ++ +PP +LRP SRG GLL+ N
Sbjct: 39 GSNLPAGKSAGREHDKRPLAGQELPPAEGNDAVPMSELLAMAEMVAKTESAVQPVAPLTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSADVVLPPLGPGQAAVRALPKRSAARSQAPVPDIADLLDNAEMGGMALDDLEASLTSLIMNSPPSMLRPGTTV-------SRGLGLLRGN 224 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig913.18158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig913.18158.1 >prot_L-elsbetiae_contig913.18158.1 ID=prot_L-elsbetiae_contig913.18158.1|Name=mRNA_L-elsbetiae_contig913.18158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=928bp MFLAQAVLSFVGVVVLPTRLAYEVLVVRPPAASGGGVGAAAVSLNLRTGLback to top mRNA from alignment at L-elsbetiae_contig913:15364..30766+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig913.18158.1 ID=mRNA_L-elsbetiae_contig913.18158.1|Name=mRNA_L-elsbetiae_contig913.18158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15403bp|location=Sequence derived from alignment at L-elsbetiae_contig913:15364..30766+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig913:15364..30766+ >mRNA_L-elsbetiae_contig913.18158.1 ID=mRNA_L-elsbetiae_contig913.18158.1|Name=mRNA_L-elsbetiae_contig913.18158.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5568bp|location=Sequence derived from alignment at L-elsbetiae_contig913:15364..30766+ (Laminarionema elsbetiae ELsaHSoW15)back to top |