mRNA_L-elsbetiae_contig9093.18122.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9093.18122.1
Unique NamemRNA_L-elsbetiae_contig9093.18122.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9093.18122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9093contigL-elsbetiae_contig9093:1392..3811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size784
Cds size765
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816984.3157434-UTR-L-elsbetiae_contig9093:1391..14101622816984.3157434-UTR-L-elsbetiae_contig9093:1391..1410Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9093 1392..1410 +
1691683960.9708345-UTR-L-elsbetiae_contig9093:1391..14101691683960.9708345-UTR-L-elsbetiae_contig9093:1391..1410Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9093 1392..1410 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816984.3267076-CDS-L-elsbetiae_contig9093:1410..14621622816984.3267076-CDS-L-elsbetiae_contig9093:1410..1462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 1411..1462 +
1691683960.9862838-CDS-L-elsbetiae_contig9093:1410..14621691683960.9862838-CDS-L-elsbetiae_contig9093:1410..1462Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 1411..1462 +
1622816984.3381064-CDS-L-elsbetiae_contig9093:1914..21161622816984.3381064-CDS-L-elsbetiae_contig9093:1914..2116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 1915..2116 +
1691683960.99559-CDS-L-elsbetiae_contig9093:1914..21161691683960.99559-CDS-L-elsbetiae_contig9093:1914..2116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 1915..2116 +
1622816984.3480346-CDS-L-elsbetiae_contig9093:2420..25381622816984.3480346-CDS-L-elsbetiae_contig9093:2420..2538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 2421..2538 +
1691683961.0054789-CDS-L-elsbetiae_contig9093:2420..25381691683961.0054789-CDS-L-elsbetiae_contig9093:2420..2538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 2421..2538 +
1622816984.3581104-CDS-L-elsbetiae_contig9093:2774..29271622816984.3581104-CDS-L-elsbetiae_contig9093:2774..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 2775..2927 +
1691683961.0155554-CDS-L-elsbetiae_contig9093:2774..29271691683961.0155554-CDS-L-elsbetiae_contig9093:2774..2927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 2775..2927 +
1622816984.3691046-CDS-L-elsbetiae_contig9093:3218..33521622816984.3691046-CDS-L-elsbetiae_contig9093:3218..3352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 3219..3352 +
1691683961.027827-CDS-L-elsbetiae_contig9093:3218..33521691683961.027827-CDS-L-elsbetiae_contig9093:3218..3352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 3219..3352 +
1622816984.3800275-CDS-L-elsbetiae_contig9093:3705..38111622816984.3800275-CDS-L-elsbetiae_contig9093:3705..3811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 3706..3811 +
1691683961.045074-CDS-L-elsbetiae_contig9093:3705..38111691683961.045074-CDS-L-elsbetiae_contig9093:3705..3811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9093 3706..3811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9093.18122.1prot_L-elsbetiae_contig9093.18122.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9093 1411..3811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9093.18122.1

>prot_L-elsbetiae_contig9093.18122.1 ID=prot_L-elsbetiae_contig9093.18122.1|Name=mRNA_L-elsbetiae_contig9093.18122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MTKECWEPSNLETLEFMKAHRPATHAVPVLNGTGYAGERSPNITSPRPTP
SKRNTTSPTTTCTTYSGVYRDRSWAPPPKSCGSKTAGPRSWKRPWGTPSR
PTGRGGTARYPLTKSGEVRCTTLYVGHACAHGDALHHGGRDIGRRNQHQP
GQGEDGCVVRPLERWNVRGQELLEGVIHQCPLLGFCARHDTAPLPQHRLQ
DTAHGRPNAVRVPVLVAKETLSQHLRRRRRELRGRGAGNAAAWWQRQLGR
RRQR*
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mRNA from alignment at L-elsbetiae_contig9093:1392..3811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9093.18122.1 ID=mRNA_L-elsbetiae_contig9093.18122.1|Name=mRNA_L-elsbetiae_contig9093.18122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2420bp|location=Sequence derived from alignment at L-elsbetiae_contig9093:1392..3811+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCAACACCTGGATCGCCATGACAAAAGAGTGCTGGGAGCCGTCAAATC
TCGAAACTCTGGAATTCATGAGTAAGATGTGTGGGGTCTTATTGACATGT
AAGCGTATGTACCTACCTCTCTTCCAAACCCTTGGAGATGTTGTTCAATC
AGTGCCGAATTCGATCATGTAATACAAATTACCGTAATAAACATGACACG
GGGCTTGTAACACATATTCAAAGGGCCACGGGGCAGGCTATTCTTCGTAA
CATATATTCGTGCTACTGGTTGTTGTCAAATTGTCGTTATTCTTTGCGTT
GTGATGTGGATCCCTGATACATCGTCACCGTCCCAAAGCGTCTTGATATC
CGTGATAGTATAACCAGACGTTTTTTTGTGAACATTTTTTGTGTGGCAGC
GGAACACAAAGTGCGTTTTCATCGCCAAACTACCCTTCACCGTCTCTCTG
TATTACTGGGATAGTATCCACTCTTGTCGAAGTTTTCACGGCGCGTGTTT
ATTTCACTTTGACCTCCCTCCAGAGGCTCACCGTCCAGCCACGCACGCTG
TGCCCGTGCTAAATGGTACGGGCTATGCAGGAGAGCGGTCACCAAATATA
ACAAGTCCACGGCCGACGCCCTCGAAAAGGAATACGACCTCCCCGACTAC
GACATGCACGACATATTCAGGAGTCTACAGGGACAGATCTTGGGCACCTC
CCCCAAAGAGTTGTGGAAGCAAGACGTTAGTGCCGCATCATGCATGCCAA
TCGTAGACAAATGCCCTGGTATACTTGCGATTGCTCAGTTGATTGTCACA
ATTACCCGCGTGGCGTAGTTTATACCCGCGAAGCTAAATTTATTGTTGCC
ACAGACCCACGCACGCACCTGATTGTCTGTAGGTTTTATTTTCGCACTCG
CCCCTGTTCATTCCTGAAGTATCATTGGTACCCAAAGAGTCTACCCGTGT
CAACCAACCTTTGGCTCTCGACACCACTTCCTGTGTCCCTTTTCTATCTG
GTCGTCTCAATGGTTTTCATTATGCACAGGGCTGGCCCACGCTCGTGGAA
GAGACCCTGGGGTACCCCCTCGAGGCCCACAGGTCGGGGGGGTACAGCTC
GCTATCCCCTGACCAAATCTGGGGAGGTCAGGTGTACGACGTTATATCGA
AGGTGGGTGTAAGGTGTAATACCACGCAGATGAGCACCTCGTGACAGTGT
CCCCGTGTGCGTTACACACAGTAGAAGTCCACTCGCCCCATGTGGGTAAC
ATCTTGGGCAGTGTTTACTCGCGGTAAAAATAAACATCACCGAGAGATAA
CAAATTTCCCCCGTGTACGCTCATCCTGGTCGCCCCCGACTCTACCTGCA
CGAAGTGGTTGATCGCACGCAGCTGGTCCTGCCGTTGGTCACGCATGCGC
TCATGGAGATGCCCTACACCACGGGGGGCGAGACATCGGACGACGCAACC
AGCATCAACCAGGTCAAGGCGAAGATGGATGCGTGGTGCGCCCTCTCGAG
CGGTGGAACGTCAGAGGACAAGAACTTCTCGAGGGCGTGAGTATGTTATT
CGTTTTATGAGTTCAAACGCTCAACGAGTCGCGTACAAACCCTGCTTTCC
TGTCCGAGATTTGTCATGCTGTGCTCAAAAAGGTGCGCACCGCACATTCC
GCTCTACACTTTGGGCCGTGCACGATAGAGTGTTATAGCGTCTCGTGTGC
CGAGCAGTGGTCGCAGCAAACGCACTTTTTTATGCTTTAAAACCGTAATC
TCGTTTCCGCGAACACAACTACTCACGCCCCCCCCCCCCGCGCCCGCGCC
CAACGCCCGAACCCACAAACACGACAGGTTATTCACCAATGCCCTCTCCT
GGGTTTCTGCGCCCGGCATGATACTGCGCCCCTGCCTCAGCATCGACTCC
AAGACACTGCGCACGGTCGACCTAATGCAGTACGTGTGCCCGTACTTGTC
GCAAAGGAAACGTGAGTGTCTGTAGCTACGGTCTACACTATTGGGTGCGT
TATATCGGGGTCTCTTTGGGCGCGTAAACAAAGCTCTTCCATATCGCCTT
TCGAGGGGGTTCCGTTGATATTCTGTCAATAGTGGTGTGTTTGGTTTGGT
GGATCGTGCGCGCGAATTTGCTGTCCGCACATCTCACAATCAATATTTCG
ATTGTTTGCTTGTCTCAGTCTCTCTAAACCACATTCGTCATACGTGTGAA
ACCGCTCCCGCAGCCGCCTTCCCCCACCTTACCCCTATGCGTTATCGACA
AACAAACTGAGTAGCCGCCATCTGCGTTTCTCTCGCATTCGCCTGTGCGC
CATGCTTGCAACAGCCTCTCGCAGCACCTTCGACGACGACGACGCGAGCT
CCGTGGACGAGGTGCCGGAAACGCTGCAGCCTGGTGGCAACGACAGCTCG
GGCGGCGGCGGCAACGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9093:1392..3811+

>mRNA_L-elsbetiae_contig9093.18122.1 ID=mRNA_L-elsbetiae_contig9093.18122.1|Name=mRNA_L-elsbetiae_contig9093.18122.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig9093:1392..3811+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAAAGAGTGCTGGGAGCCGTCAAATCTCGAAACTCTGGAATTCAT
GAATGACAAAAGAGTGCTGGGAGCCGTCAAATCTCGAAACTCTGGAATTC
ATGAAGGCTCACCGTCCAGCCACGCACGCTGTGCCCGTGCTAAATGGTAC
GGGCTATGCAGGAGAGCGGTCACCAAATATAACAAGTCCACGGCCGACGC
CCTCGAAAAGGAATACGACCTCCCCGACTACGACATGCACGACATATTCA
GGAGTCTACAGGGACAGATCTTGGGCACCTCCCCCAAAGAGTTGTGGAAG
CAAGACAGGCTCACCGTCCAGCCACGCACGCTGTGCCCGTGCTAAATGGT
ACGGGCTATGCAGGAGAGCGGTCACCAAATATAACAAGTCCACGGCCGAC
GCCCTCGAAAAGGAATACGACCTCCCCGACTACGACATGCACGACATATT
CAGGAGTCTACAGGGACAGATCTTGGGCACCTCCCCCAAAGAGTTGTGGA
AGCAAGACGGCTGGCCCACGCTCGTGGAAGAGACCCTGGGGTACCCCCTC
GAGGCCCACAGGTCGGGGGGGTACAGCTCGCTATCCCCTGACCAAATCTG
GGGAGGTCAGGTGTACGACGTTATATGGCTGGCCCACGCTCGTGGAAGAG
ACCCTGGGGTACCCCCTCGAGGCCCACAGGTCGGGGGGGTACAGCTCGCT
ATCCCCTGACCAAATCTGGGGAGGTCAGGTGTACGACGTTATATGTTGGT
CACGCATGCGCTCATGGAGATGCCCTACACCACGGGGGGCGAGACATCGG
ACGACGCAACCAGCATCAACCAGGTCAAGGCGAAGATGGATGCGTGGTGC
GCCCTCTCGAGCGGTGGAACGTCAGAGGACAAGAACTTCTCGAGGGCGTT
GGTCACGCATGCGCTCATGGAGATGCCCTACACCACGGGGGGCGAGACAT
CGGACGACGCAACCAGCATCAACCAGGTCAAGGCGAAGATGGATGCGTGG
TGCGCCCTCTCGAGCGGTGGAACGTCAGAGGACAAGAACTTCTCGAGGGC
GTTATTCACCAATGCCCTCTCCTGGGTTTCTGCGCCCGGCATGATACTGC
GCCCCTGCCTCAGCATCGACTCCAAGACACTGCGCACGGTCGACCTAATG
CAGTACGTGTGCCCGTACTTGTCGCAAAGGAAACGTTATTCACCAATGCC
CTCTCCTGGGTTTCTGCGCCCGGCATGATACTGCGCCCCTGCCTCAGCAT
CGACTCCAAGACACTGCGCACGGTCGACCTAATGCAGTACGTGTGCCCGT
ACTTGTCGCAAAGGAAACCCTCTCGCAGCACCTTCGACGACGACGACGCG
AGCTCCGTGGACGAGGTGCCGGAAACGCTGCAGCCTGGTGGCAACGACAG
CTCGGGCGGCGGCGGCAACGGTGACCTCTCGCAGCACCTTCGACGACGAC
GACGCGAGCTCCGTGGACGAGGTGCCGGAAACGCTGCAGCCTGGTGGCAA
CGACAGCTCGGGCGGCGGCGGCAACGGTGA
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