mRNA_L-elsbetiae_contig9087.18118.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9087.18118.1
Unique NamemRNA_L-elsbetiae_contig9087.18118.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9087.18118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9087contigL-elsbetiae_contig9087:7180..7997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size818
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9087.18118.1prot_L-elsbetiae_contig9087.18118.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9087 7488..7982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816983.687069-UTR-L-elsbetiae_contig9087:7179..74871622816983.687069-UTR-L-elsbetiae_contig9087:7179..7487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9087 7180..7487 +
1691683960.511631-UTR-L-elsbetiae_contig9087:7179..74871691683960.511631-UTR-L-elsbetiae_contig9087:7179..7487Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9087 7180..7487 +
1622816983.7131674-UTR-L-elsbetiae_contig9087:7982..79971622816983.7131674-UTR-L-elsbetiae_contig9087:7982..7997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9087 7983..7997 +
1691683960.5293267-UTR-L-elsbetiae_contig9087:7982..79971691683960.5293267-UTR-L-elsbetiae_contig9087:7982..7997Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9087 7983..7997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816983.6992133-CDS-L-elsbetiae_contig9087:7487..79821622816983.6992133-CDS-L-elsbetiae_contig9087:7487..7982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9087 7488..7982 +
1691683960.520834-CDS-L-elsbetiae_contig9087:7487..79821691683960.520834-CDS-L-elsbetiae_contig9087:7487..7982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9087 7488..7982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9087.18118.1

>prot_L-elsbetiae_contig9087.18118.1 ID=prot_L-elsbetiae_contig9087.18118.1|Name=mRNA_L-elsbetiae_contig9087.18118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MCDGHTDCAPQIFCADSGPHPIGRHLRLRASRAVALYSRCVPRHEYCVRR
HGRDVVVVAFLGCENFDDGRLGLFVAPPYCFREENRRLNRRAFDALGTYA
LARQQFGIPAVWEGDGCERAIVFSVAAEILTKQCSKNSVTLFWASFFRGC
SRVMTRPAGRVKSI*
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mRNA from alignment at L-elsbetiae_contig9087:7180..7997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9087.18118.1 ID=mRNA_L-elsbetiae_contig9087.18118.1|Name=mRNA_L-elsbetiae_contig9087.18118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=818bp|location=Sequence derived from alignment at L-elsbetiae_contig9087:7180..7997+ (Laminarionema elsbetiae ELsaHSoW15)
GTGCCCGCATGCGTGTGATGAGTGTGTTGATTGCGCCGCGCGTAGATAGA
CTATATCTTTAAAATTTATTTTGAAACGTTCATTTGGGTCCTACCGCATC
GTACGTAGCGTGAGGCGTGCCTCTGTTAGTTTCCGCTGTGTGTGAAGGCA
GAGACTTCCATGCGTCAGTTCTGTGTGTTCCCGGTGTGCGAAGGCATGAT
CGCGAAGTGGTAAACGTGGCTTTTGCCGGACCGAAGGATCCACAGCGAGC
GCCCGTCGCGTAACGCCTGTCGTACGCGCACGCGCACGCGCACGCGCGCA
CGCACGTGATGTGTGATGGGCATACAGATTGCGCCCCACAAATTTTCTGT
GCCGACAGCGGCCCGCATCCCATCGGACGTCATCTTAGGCTACGCGCTTC
CCGTGCTGTAGCTCTGTATTCCCGCTGTGTGCCAAGGCATGAGTACTGTG
TGAGAAGGCATGGCCGAGATGTGGTGGTCGTTGCTTTTCTTGGATGCGAG
AATTTCGATGATGGGCGTTTGGGTTTGTTTGTGGCGCCTCCTTATTGTTT
TAGGGAGGAAAATCGGCGTCTAAATCGGCGAGCATTTGATGCACTAGGAA
CATACGCGCTAGCCCGTCAGCAGTTCGGTATTCCTGCCGTGTGGGAAGGC
GATGGCTGCGAGAGGGCTATTGTATTTTCCGTGGCTGCAGAGATTTTGAC
GAAACAATGTTCGAAAAACAGCGTTACCCTTTTTTGGGCTTCATTTTTCC
GGGGATGTTCACGGGTCATGACCCGACCCGCGGGTCGGGTCAAAAGTATT
TGAAATATGACGGGTCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9087:7180..7997+

>mRNA_L-elsbetiae_contig9087.18118.1 ID=mRNA_L-elsbetiae_contig9087.18118.1|Name=mRNA_L-elsbetiae_contig9087.18118.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig9087:7180..7997+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGATGGGCATACAGATTGCGCCCCACAAATTTTCTGTGCCGACAG
CGGCCCGCATCCCATCGGACGTCATCTTAGGCTACGCGCTTCCCGTGCTG
TAGCTCTGTATTCCCGCTGTGTGCCAAGGCATGAGTACTGTGTGAGAAGG
CATGGCCGAGATGTGGTGGTCGTTGCTTTTCTTGGATGCGAGAATTTCGA
TGATGGGCGTTTGGGTTTGTTTGTGGCGCCTCCTTATTGTTTTAGGGAGG
AAAATCGGCGTCTAAATCGGCGAGCATTTGATGCACTAGGAACATACGCG
CTAGCCCGTCAGCAGTTCGGTATTCCTGCCGTGTGGGAAGGCGATGGCTG
CGAGAGGGCTATTGTATTTTCCGTGGCTGCAGAGATTTTGACGAAACAAT
GTTCGAAAAACAGCGTTACCCTTTTTTGGGCTTCATTTTTCCGGGGATGT
TCACGGGTCATGACCCGACCCGCGGGTCGGGTCAAAAGTATTTGAATGTG
TGATGGGCATACAGATTGCGCCCCACAAATTTTCTGTGCCGACAGCGGCC
CGCATCCCATCGGACGTCATCTTAGGCTACGCGCTTCCCGTGCTGTAGCT
CTGTATTCCCGCTGTGTGCCAAGGCATGAGTACTGTGTGAGAAGGCATGG
CCGAGATGTGGTGGTCGTTGCTTTTCTTGGATGCGAGAATTTCGATGATG
GGCGTTTGGGTTTGTTTGTGGCGCCTCCTTATTGTTTTAGGGAGGAAAAT
CGGCGTCTAAATCGGCGAGCATTTGATGCACTAGGAACATACGCGCTAGC
CCGTCAGCAGTTCGGTATTCCTGCCGTGTGGGAAGGCGATGGCTGCGAGA
GGGCTATTGTATTTTCCGTGGCTGCAGAGATTTTGACGAAACAATGTTCG
AAAAACAGCGTTACCCTTTTTTGGGCTTCATTTTTCCGGGGATGTTCACG
GGTCATGACCCGACCCGCGGGTCGGGTCAAAAGTATTTGA
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