mRNA_L-elsbetiae_contig9041.18071.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9041.18071.1
Unique NamemRNA_L-elsbetiae_contig9041.18071.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9041.18071.1 vs. uniprot
Match: A0A6H5KGG6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGG6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.580e-10
Identity = 67/148 (45.27%), Postives = 83/148 (56.08%), Query Frame = 1 
Query:  922 AQEQPRREFPSAVATLSTPQRMRRNS--QPALSFLVESSLSCMLSGQVAT-------TPRRQW-GSPSTPRRQPHSQPTSARSTPARRRQWV------PEQGMMAASLSSCAS-NGGESGRRQVLGEGKLAIDEERRCNELESGAAPG 1314
            A E PR  FPSAVATLSTPQRMRR S  Q A SF VE +L    SG  A+       TP+R+W  SPSTPR  P    +SA +TP+RR + +      P +G++ A   + A+ +GGE GRRQ  GE K    EE    E+  G   G
Sbjct:  607 APESPRSGFPSAVATLSTPQRMRRKSYAQRATSFSVEDTLLLASSGLAASGSGTAPATPQRRWEASPSTPRNWP-IMTSSAGNTPSRRHRRIRQRDSSPRRGVVGAGGPAAANRHGGEPGRRQSWGEQKQTEAEE----EIHGGGVSG 749
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9041.18071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGG6_9PHAE3.580e-1045.27RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9041contigL-elsbetiae_contig9041:2800..5059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1468
Cds size1464
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816980.0659912-CDS-L-elsbetiae_contig9041:2801..36631622816980.0659912-CDS-L-elsbetiae_contig9041:2801..3663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9041 2802..3663 -
1691683957.7557974-CDS-L-elsbetiae_contig9041:2801..36631691683957.7557974-CDS-L-elsbetiae_contig9041:2801..3663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9041 2802..3663 -
1622816980.077143-CDS-L-elsbetiae_contig9041:4457..50591622816980.077143-CDS-L-elsbetiae_contig9041:4457..5059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9041 4458..5059 -
1691683957.768319-CDS-L-elsbetiae_contig9041:4457..50591691683957.768319-CDS-L-elsbetiae_contig9041:4457..5059Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9041 4458..5059 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9041.18071.1prot_L-elsbetiae_contig9041.18071.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9041 2802..5059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9041.18071.1

>prot_L-elsbetiae_contig9041.18071.1 ID=prot_L-elsbetiae_contig9041.18071.1|Name=mRNA_L-elsbetiae_contig9041.18071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=488bp
ARSETISERSESFRSESGYGSDQARSTWSSVSAPAAFADRVPPDSSRPLR
SAVSVLPNPNSSFGRASPRPSLERAAAPRHGAPSPSPMPSSMNPRSPARS
FPTRPPTGNATSQATPTAAAGGGVASVTVAAAASSGPSARPVDPGVKTPS
LRLSVSTFPPEWSLHCSRDAEECSNSCSSSSSCGSVSSTNSNDEDHIHSH
RSSEHALNAGSMRSPSFKRPLQSLSPARVSNQSPRRQHLSLAALNQRPQS
PSSSIPWSSTSMLRSPAQIHRRPPSPHPESRGAAAPRTGHTIPHVSRPAA
LLAPPTCAQEQPRREFPSAVATLSTPQRMRRNSQPALSFLVESSLSCMLS
GQVATTPRRQWGSPSTPRRQPHSQPTSARSTPARRRQWVPEQGMMAASLS
SCASNGGESGRRQVLGEGKLAIDEERRCNELESGAAPGGVIDAKQSVGER
LERWADERGAKTSSVSSCASDRVSTRKARGEGELRMDE
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mRNA from alignment at L-elsbetiae_contig9041:2800..5059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9041.18071.1 ID=mRNA_L-elsbetiae_contig9041.18071.1|Name=mRNA_L-elsbetiae_contig9041.18071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2260bp|location=Sequence derived from alignment at L-elsbetiae_contig9041:2800..5059- (Laminarionema elsbetiae ELsaHSoW15)
GCTCGATCGGAAACGATATCGGAGAGATCAGAGAGCTTCAGATCGGAGTC
CGGGTACGGATCTGACCAGGCCCGTTCCACGTGGTCTTCCGTGTCGGCTC
CAGCGGCTTTCGCCGACAGAGTGCCTCCAGACAGCAGCAGACCTCTCCGT
AGCGCAGTCTCTGTGCTTCCGAATCCAAACAGCAGCTTTGGTCGAGCTTC
GCCACGCCCCAGCCTCGAAAGAGCTGCCGCGCCTAGGCATGGCGCACCTT
CACCATCCCCGATGCCGAGTTCAATGAACCCCAGGTCGCCCGCGAGGAGT
TTTCCTACCAGGCCGCCGACTGGAAACGCCACATCACAAGCCACACCCAC
GGCTGCTGCAGGTGGTGGGGTTGCCTCTGTGACGGTTGCGGCTGCTGCTT
CGTCGGGGCCGAGCGCGAGGCCGGTCGATCCGGGAGTGAAAACCCCCTCG
CTCCGGCTGAGTGTGTCGACATTCCCGCCAGAATGGAGCCTGCATTGTAG
TAGAGACGCTGAGGAGTGCAGCAACAGCTGCAGCAGTAGCAGCAGCTGCG
GCAGTGTTAGCAGCACTAACAGCAACGATGAAGACCACATCCATTCCCAC
CGGTGAGGTTTATGGTAGCATTTACTCCAGAGTACCGTAGGTGACATAAG
ATAAGACACCCCCTGGACCGATATTGAAAGCTTGGTTACTCCGCAACGAA
TACGATTCTAACCACAAACGCCACATTTTCGGAAAGGTCTCGACGAGATC
TTTCCAACGCCGCCCTTTTGGGGACGGACGCTCTGCTTGCTGTGGAGTTC
TTGAGCTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTCTGTCACCTACG
GTATTTTGTACTGGAGTAGAATTTCGATTTTATGGTAGTAGTACTGACCA
TATACTGCAGTAGAATTAGACGGGTGCGTAAGTGGCGAGTCCCTGTGGAT
TTTGTATAGATTTTATGGTAGCACTTAACACATACTGCAGTAGAAATAGA
TGGGTGTTGAAGAAATCTACTGGTGTAGGGAACCAGCCTTCTTGCTGGTA
CCGGGATAAGGTAAGGTGAAGTGGGTGGATGCGTTGCTTTTGCAACATTT
TAGGGCGTCCTCCGTTGCCGCCAGGGTAAACATGAATTCAATGCCGCGGT
CTCGCGTGCCGTGATAGTTTTAACCGGTGTTCTCCCCCGCACCTGCTCCA
CTATTGACGGTAGGTTTTACTTCATTCGCAAATGCATGCTTACGCACCAC
GTTTCGCGCCACGCGGGCCGTGCTGCAATGTATGCTGCATGGTATCCCCC
CTCTACCTGACAACCGCCCACCGTGTCTCTGGCCTCTCTCCTCCTTCCCC
GATGTTGAATTTCGTTGCTGTTTCCTCCGCCGTCCTCTTTCACCAGATCT
TCGGAGCACGCGCTCAACGCCGGTTCGATGCGATCTCCGAGCTTTAAGCG
ACCCTTGCAATCCCTGTCACCTGCCCGCGTCTCGAATCAATCACCTCGAC
GCCAGCACCTATCCCTCGCGGCACTTAACCAGCGGCCTCAGAGCCCGTCG
TCGAGCATCCCGTGGTCGTCGACGAGCATGTTGCGGTCTCCTGCTCAAAT
CCATCGCCGACCACCATCTCCACACCCGGAGAGCAGGGGCGCCGCCGCGC
CACGTACTGGTCATACGATACCGCACGTATCCCGCCCTGCTGCTCTTCTC
GCACCCCCAACCTGTGCCCAAGAACAGCCTCGCCGGGAGTTCCCTTCGGC
GGTGGCTACACTGTCTACACCGCAACGAATGAGGCGCAACTCTCAGCCTG
CTCTTTCTTTTCTAGTGGAAAGCTCGTTGTCCTGCATGCTGAGCGGTCAG
GTGGCAACAACACCTCGGCGACAGTGGGGTTCGCCGTCGACCCCGCGACG
CCAGCCGCATTCGCAGCCGACATCGGCGAGAAGTACTCCCGCTCGCCGCC
GCCAGTGGGTCCCGGAACAGGGGATGATGGCGGCCTCACTTTCTTCGTGC
GCGAGCAATGGCGGTGAATCCGGCCGACGCCAAGTATTGGGAGAAGGGAA
GTTGGCCATAGACGAAGAGAGGCGTTGCAACGAACTGGAGAGCGGGGCGG
CTCCGGGCGGGGTCATTGACGCGAAACAGAGTGTTGGTGAAAGGTTGGAG
CGTTGGGCTGACGAGCGAGGGGCGAAGACATCTTCGGTTTCTTCGTGCGC
GAGCGATAGAGTTTCGACAAGAAAGGCGCGGGGGGAAGGGGAATTGAGGA
TGGATGAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9041:2800..5059-

>mRNA_L-elsbetiae_contig9041.18071.1 ID=mRNA_L-elsbetiae_contig9041.18071.1|Name=mRNA_L-elsbetiae_contig9041.18071.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2928bp|location=Sequence derived from alignment at L-elsbetiae_contig9041:2800..5059- (Laminarionema elsbetiae ELsaHSoW15)
GCTCGATCGGAAACGATATCGGAGAGATCAGAGAGCTTCAGATCGGAGTC
CGGGTACGGATCTGACCAGGCCCGTTCCACGTGGTCTTCCGTGTCGGCTC
CAGCGGCTTTCGCCGACAGAGTGCCTCCAGACAGCAGCAGACCTCTCCGT
AGCGCAGTCTCTGTGCTTCCGAATCCAAACAGCAGCTTTGGTCGAGCTTC
GCCACGCCCCAGCCTCGAAAGAGCTGCCGCGCCTAGGCATGGCGCACCTT
CACCATCCCCGATGCCGAGTTCAATGAACCCCAGGTCGCCCGCGAGGAGT
TTTCCTACCAGGCCGCCGACTGGAAACGCCACATCACAAGCCACACCCAC
GGCTGCTGCAGGTGGTGGGGTTGCCTCTGTGACGGTTGCGGCTGCTGCTT
CGTCGGGGCCGAGCGCGAGGCCGGTCGATCCGGGAGTGAAAACCCCCTCG
CTCCGGCTGAGTGTGTCGACATTCCCGCCAGAATGGAGCCTGCATTGTAG
TAGAGACGCTGAGGAGTGCAGCAACAGCTGCAGCAGTAGCAGCAGCTGCG
GCAGTGTTAGCAGCACTAACAGCAACGATGAAGACCACATCCATTCCCAC
CGGCTCGATCGGAAACGATATCGGAGAGATCAGAGAGCTTCAGATCGGAG
TCCGGGTACGGATCTGACCAGGCCCGTTCCACGTGGTCTTCCGTGTCGGC
TCCAGCGGCTTTCGCCGACAGAGTGCCTCCAGACAGCAGCAGACCTCTCC
GTAGCGCAGTCTCTGTGCTTCCGAATCCAAACAGCAGCTTTGGTCGAGCT
TCGCCACGCCCCAGCCTCGAAAGAGCTGCCGCGCCTAGGCATGGCGCACC
TTCACCATCCCCGATGCCGAGTTCAATGAACCCCAGGTCGCCCGCGAGGA
GTTTTCCTACCAGGCCGCCGACTGGAAACGCCACATCACAAGCCACACCC
ACGGCTGCTGCAGGTGGTGGGGTTGCCTCTGTGACGGTTGCGGCTGCTGC
TTCGTCGGGGCCGAGCGCGAGGCCGGTCGATCCGGGAGTGAAAACCCCCT
CGCTCCGGCTGAGTGTGTCGACATTCCCGCCAGAATGGAGCCTGCATTGT
AGTAGAGACGCTGAGGAGTGCAGCAACAGCTGCAGCAGTAGCAGCAGCTG
CGGCAGTGTTAGCAGCACTAACAGCAACGATGAAGACCACATCCATTCCC
ACCGATCTTCGGAGCACGCGCTCAACGCCGGTTCGATGCGATCTCCGAGC
TTTAAGCGACCCTTGCAATCCCTGTCACCTGCCCGCGTCTCGAATCAATC
ACCTCGACGCCAGCACCTATCCCTCGCGGCACTTAACCAGCGGCCTCAGA
GCCCGTCGTCGAGCATCCCGTGGTCGTCGACGAGCATGTTGCGGTCTCCT
GCTCAAATCCATCGCCGACCACCATCTCCACACCCGGAGAGCAGGGGCGC
CGCCGCGCCACGTACTGGTCATACGATACCGCACGTATCCCGCCCTGCTG
CTCTTCTCGCACCCCCAACCTGTGCCCAAGAACAGCCTCGCCGGGAGTTC
CCTTCGGCGGTGGCTACACTGTCTACACCGCAACGAATGAGGCGCAACTC
TCAGCCTGCTCTTTCTTTTCTAGTGGAAAGCTCGTTGTCCTGCATGCTGA
GCGGTCAGGTGGCAACAACACCTCGGCGACAGTGGGGTTCGCCGTCGACC
CCGCGACGCCAGCCGCATTCGCAGCCGACATCGGCGAGAAGTACTCCCGC
TCGCCGCCGCCAGTGGGTCCCGGAACAGGGGATGATGGCGGCCTCACTTT
CTTCGTGCGCGAGCAATGGCGGTGAATCCGGCCGACGCCAAGTATTGGGA
GAAGGGAAGTTGGCCATAGACGAAGAGAGGCGTTGCAACGAACTGGAGAG
CGGGGCGGCTCCGGGCGGGGTCATTGACGCGAAACAGAGTGTTGGTGAAA
GGTTGGAGCGTTGGGCTGACGAGCGAGGGGCGAAGACATCTTCGGTTTCT
TCGTGCGCGAGCGATAGAGTTTCGACAAGAAAGGCGCGGGGGGAAGGGGA
ATTGAGGATGGATGAGATCTTCGGAGCACGCGCTCAACGCCGGTTCGATG
CGATCTCCGAGCTTTAAGCGACCCTTGCAATCCCTGTCACCTGCCCGCGT
CTCGAATCAATCACCTCGACGCCAGCACCTATCCCTCGCGGCACTTAACC
AGCGGCCTCAGAGCCCGTCGTCGAGCATCCCGTGGTCGTCGACGAGCATG
TTGCGGTCTCCTGCTCAAATCCATCGCCGACCACCATCTCCACACCCGGA
GAGCAGGGGCGCCGCCGCGCCACGTACTGGTCATACGATACCGCACGTAT
CCCGCCCTGCTGCTCTTCTCGCACCCCCAACCTGTGCCCAAGAACAGCCT
CGCCGGGAGTTCCCTTCGGCGGTGGCTACACTGTCTACACCGCAACGAAT
GAGGCGCAACTCTCAGCCTGCTCTTTCTTTTCTAGTGGAAAGCTCGTTGT
CCTGCATGCTGAGCGGTCAGGTGGCAACAACACCTCGGCGACAGTGGGGT
TCGCCGTCGACCCCGCGACGCCAGCCGCATTCGCAGCCGACATCGGCGAG
AAGTACTCCCGCTCGCCGCCGCCAGTGGGTCCCGGAACAGGGGATGATGG
CGGCCTCACTTTCTTCGTGCGCGAGCAATGGCGGTGAATCCGGCCGACGC
CAAGTATTGGGAGAAGGGAAGTTGGCCATAGACGAAGAGAGGCGTTGCAA
CGAACTGGAGAGCGGGGCGGCTCCGGGCGGGGTCATTGACGCGAAACAGA
GTGTTGGTGAAAGGTTGGAGCGTTGGGCTGACGAGCGAGGGGCGAAGACA
TCTTCGGTTTCTTCGTGCGCGAGCGATAGAGTTTCGACAAGAAAGGCGCG
GGGGGAAGGGGAATTGAGGATGGATGAG
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