mRNA_L-elsbetiae_contig9041.18070.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9041.18070.1
Unique NamemRNA_L-elsbetiae_contig9041.18070.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9041.18070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9041contigL-elsbetiae_contig9041:1497..1862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816980.022577-CDS-L-elsbetiae_contig9041:1496..18261622816980.022577-CDS-L-elsbetiae_contig9041:1496..1826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9041 1497..1826 +
1691683957.722617-CDS-L-elsbetiae_contig9041:1496..18261691683957.722617-CDS-L-elsbetiae_contig9041:1496..1826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9041 1497..1826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816980.0333338-UTR-L-elsbetiae_contig9041:1826..18621622816980.0333338-UTR-L-elsbetiae_contig9041:1826..1862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9041 1827..1862 +
1691683957.7332537-UTR-L-elsbetiae_contig9041:1826..18621691683957.7332537-UTR-L-elsbetiae_contig9041:1826..1862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9041 1827..1862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9041.18070.1prot_L-elsbetiae_contig9041.18070.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9041 1497..1826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9041.18070.1

>prot_L-elsbetiae_contig9041.18070.1 ID=prot_L-elsbetiae_contig9041.18070.1|Name=mRNA_L-elsbetiae_contig9041.18070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
APLKTNPGISPPSPFDSARTYSSSRCILDSIIPSIRYPHHQASKLVSTVF
WHLLHATVSARTADTRGGGYGSRRVDFLMQHVRVYLRIYCFNRSHFRPSL
TRLANCSTT*
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mRNA from alignment at L-elsbetiae_contig9041:1497..1862+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9041.18070.1 ID=mRNA_L-elsbetiae_contig9041.18070.1|Name=mRNA_L-elsbetiae_contig9041.18070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig9041:1497..1862+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCACTTAAGACAAATCCAGGCATCTCACCACCGTCACCCTTTGACAG
TGCGCGCACGTACAGCAGTAGCCGCTGTATACTTGACTCAATTATACCGT
CTATACGATACCCGCATCACCAAGCAAGCAAGTTGGTTTCGACCGTTTTT
TGGCACCTTCTTCATGCCACCGTTTCGGCACGGACGGCAGACACGCGCGG
GGGGGGCTATGGAAGTCGACGAGTCGATTTCCTCATGCAGCATGTAAGAG
TCTATCTACGCATCTATTGTTTTAACCGGAGCCATTTTCGACCAAGCCTC
ACACGGCTCGCAAATTGTAGCACCACGTAGTCCATGCCTACTTCTTGCAC
GGGCACACGCTCTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9041:1497..1862+

>mRNA_L-elsbetiae_contig9041.18070.1 ID=mRNA_L-elsbetiae_contig9041.18070.1|Name=mRNA_L-elsbetiae_contig9041.18070.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig9041:1497..1862+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCCACTTAAGACAAATCCAGGCATCTCACCACCGTCACCCTTTGACAG
TGCGCGCACGTACAGCAGTAGCCGCTGTATACTTGACTCAATTATACCGT
CTATACGATACCCGCATCACCAAGCAAGCAAGTTGGTTTCGACCGTTTTT
TGGCACCTTCTTCATGCCACCGTTTCGGCACGGACGGCAGACACGCGCGG
GGGGGGCTATGGAAGTCGACGAGTCGATTTCCTCATGCAGCATGTAAGAG
TCTATCTACGCATCTATTGTTTTAACCGGAGCCATTTTCGACCAAGCCTC
ACACGGCTCGCAAATTGTAGCACCACGTAGGCGCCACTTAAGACAAATCC
AGGCATCTCACCACCGTCACCCTTTGACAGTGCGCGCACGTACAGCAGTA
GCCGCTGTATACTTGACTCAATTATACCGTCTATACGATACCCGCATCAC
CAAGCAAGCAAGTTGGTTTCGACCGTTTTTTGGCACCTTCTTCATGCCAC
CGTTTCGGCACGGACGGCAGACACGCGCGGGGGGGGCTATGGAAGTCGAC
GAGTCGATTTCCTCATGCAGCATGTAAGAGTCTATCTACGCATCTATTGT
TTTAACCGGAGCCATTTTCGACCAAGCCTCACACGGCTCGCAAATTGTAG
CACCACGTAG
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