mRNA_L-elsbetiae_contig9032.18062.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9032.18062.1
Unique NamemRNA_L-elsbetiae_contig9032.18062.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9032.18062.1 vs. uniprot
Match: D7FX18_ECTSI (KH domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX18_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 5.170e-27
Identity = 70/118 (59.32%), Postives = 77/118 (65.25%), Query Frame = 3 
Query:  516 LFLLQHIAGQVIGRAGQTVNRLMRESRATIVLKTYQDRSGHDVVIHGTPAAVQAARRLVEDFYRSKGCEPTALRPPSTAFRAGASAATPPAHRAGLL----LPHPAEPTGAMIGRLGR 857
            +F    IAGQVIGR GQTVNRLM+ESRA IVLKTY D++GHDVVI G+P AV   RRLVEDFYRSKG EPT L+PPS                 G+     LP P  PT AMIG LGR
Sbjct:  589 MFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKTYADKTGHDVVITGSPQAVLTGRRLVEDFYRSKGIEPTLLQPPSXXXXXXXXXXXXXGRPGGVAPRARLPDPMMPTEAMIGHLGR 706
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BLAST of mRNA_L-elsbetiae_contig9032.18062.1 vs. uniprot
Match: A0A6H5J8V2_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8V2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.220e-22
Identity = 69/120 (57.50%), Postives = 74/120 (61.67%), Query Frame = 3 
Query:  516 LFLLQHIAGQVIGRAGQTVNRLMRESRATIVLKTYQDRSGHDVVIHGTPAAVQAARRLVEDFYRSKGCEPTALRPPSTAFRA------GASAATPPAHRAGLLLPHPAEPTGAMIGRLGR 857
            +F    IAGQVIGR GQTVNRLM+ESRA IVLK Y D++GHDVVI G+P A   ARRLVEDFYRSKG EPT L P             G      P  R    LP P  PT AMIG LGR
Sbjct:  735 MFCPNVIAGQVIGRGGQTVNRLMKESRARIVLKPYADKTGHDVVITGSPQAT--ARRLVEDFYRSKGIEPTHLPPXXXXXXXXXXXXXGRPGGVAPRAR----LPDPMMPTEAMIGHLGR 848
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BLAST of mRNA_L-elsbetiae_contig9032.18062.1 vs. uniprot
Match: D7FX21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX21_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 2.220e-22
Identity = 52/82 (63.41%), Postives = 68/82 (82.93%), Query Frame = 3 
Query:  516 LFLLQHIAGQVIGRAGQTVNRLMRESRATIVLKTYQDRSGHDVVIHGTPAAVQAARRLVEDFYRSKGCEPTALRPPSTAFRA 761
            +F   +IA Q+IG+ GQTVN+LM++SRA IV+K Y DRSG+DV+I GTP AV+ A+RLVE+FYRSKGC+P+AL PPS+A  A
Sbjct:  769 MFCPNNIAPQLIGKQGQTVNKLMKDSRAKIVVKPYPDRSGNDVIITGTPNAVKTAKRLVEEFYRSKGCQPSALPPPSSAVAA 850
[Close]
BLAST of mRNA_L-elsbetiae_contig9032.18062.1 vs. uniprot
Match: A0A6H5JKP4_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKP4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.880e-12
Identity = 53/149 (35.57%), Postives = 68/149 (45.64%), Query Frame = 3 
Query:  516 LFLLQHIAGQVIGRAGQTVNRLMRESRATIVLKTYQDRSGHDVVIHGTPAAVQAAR---------------------------------------------------------------RLVEDFYRSKGCEPTALRPPSTAFRAGASA 773
            L   Q+IA Q+IG+ GQTV++LM+ESRA IV+K Y DRSG+DVVI GTP AV+ ++                                                               R+ E+FYRSKGC+PTAL PPS+A  A   A
Sbjct:   47 LLRAQNIAPQLIGKQGQTVSKLMKESRAKIVVKPYPDRSGNDVVITGTPNAVKVSKSRVLGSTLDCCRGCVRVRCLAIPLYFQAVVVGRCDGVGAGCFVVVVNALSLRHPLQCTRRVTMRVEEEFYRSKGCQPTALPPPSSAVAAARKA 195
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9032.18062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FX18_ECTSI5.170e-2759.32KH domain containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5J8V2_9PHAE1.220e-2257.50RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FX21_ECTSI2.220e-2263.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKP4_9PHAE2.880e-1235.57RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9032contigL-elsbetiae_contig9032:3975..5422 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size871
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9032.18062.1prot_L-elsbetiae_contig9032.18062.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9032 3975..4841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816979.0903878-CDS-L-elsbetiae_contig9032:3974..41691622816979.0903878-CDS-L-elsbetiae_contig9032:3974..4169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 3975..4169 -
1691683956.9299285-CDS-L-elsbetiae_contig9032:3974..41691691683956.9299285-CDS-L-elsbetiae_contig9032:3974..4169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 3975..4169 -
1622816979.1036203-CDS-L-elsbetiae_contig9032:4748..48411622816979.1036203-CDS-L-elsbetiae_contig9032:4748..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 4749..4841 -
1691683956.943097-CDS-L-elsbetiae_contig9032:4748..48411691683956.943097-CDS-L-elsbetiae_contig9032:4748..4841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9032 4749..4841 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816979.1164162-UTR-L-elsbetiae_contig9032:4841..54221622816979.1164162-UTR-L-elsbetiae_contig9032:4841..5422Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9032 4842..5422 -
1691683956.9560845-UTR-L-elsbetiae_contig9032:4841..54221691683956.9560845-UTR-L-elsbetiae_contig9032:4841..5422Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9032 4842..5422 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9032.18062.1

>prot_L-elsbetiae_contig9032.18062.1 ID=prot_L-elsbetiae_contig9032.18062.1|Name=mRNA_L-elsbetiae_contig9032.18062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MRESRATIVLKTYQDRSGHDVVIHGTPAAVQAARRLVEDFYRSKGCEPTA
LRPPSTAFRAGASAATPPAHRAGLLLPHPAEPTGAMIGRLGRATSE
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mRNA from alignment at L-elsbetiae_contig9032:3975..5422-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9032.18062.1 ID=mRNA_L-elsbetiae_contig9032.18062.1|Name=mRNA_L-elsbetiae_contig9032.18062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1448bp|location=Sequence derived from alignment at L-elsbetiae_contig9032:3975..5422- (Laminarionema elsbetiae ELsaHSoW15)
ACAGTCCTGCACGAATCCAACTTGATCCTACTGAAAAAATCCGCTCGGCT
ATAAGAAAGGCCGGACTTTTTCTCGGTGGGATTTTCGCCGAAATCGGATT
TGGCTCTTTTTTGGTTTCAGAATCCGACAGTATAAGAAACGGCCTAAGCC
CTAAATTAAAGATAATAAAAAGGCTTGATTTTGTTTTTGTACTTTGCGGA
CCCTTCGGGTCTGTCCATTTTGACGTTTGTTTCTTTGTTTTTCTGTCTTT
TCAGCTAATGTACCCCCTGTTTTAGGGTAAGTTATCCTGTGACCACGGGA
ATCGACCGCGTCGAGTGTTGGGGTTAGTACGGGCTCATGGAGGCACTGGA
TAGAGAGATCGGAACGGTTTTTTTAATTTGAAGACAGTAGTAACAACAGC
AGCAGCAGCGGGAGCAGCAGCAAGAACGACTTCCGTTGCGTTTTTGTTTG
GTTCTTTTTTCTCTCTCTCCCGCGCGGTGCGTGCGTGCTGTCGGTGCGTT
GCTGCTGTTGCGCGGCTCTTCTTGTTGCAGCACATCGCGGGGCAGGTCAT
CGGAAGGGCCGGCCAGACCGTGAACAGACTCATGAGAGAGAGCAGGGCTA
CGATCGTGCTCAAGACCTACCAGGACAGGAGCGGCCACGACGTCGTGATC
CACGGCACCCCTGCCGCCGTCCAGGTGAGCCGTCAATGTCTATCGGCACC
CCCTGCCGCCGTTCAGGTGGGTGTTTCTGTTTGTCGACCCCCCCCCCTGC
CGCCGGTCGTGTGGGTGTTTCTGTCTGTCTGCTTGTCTCAGGAGCGGCCG
AAAAAATACATTTTCCTCTCAAGAGAGGAAACCGTGCCATGCCGCGTTCT
GCCCGGGGGGAGTGGGGCGTTCGTTGTCTTCGGCGCGGCAACCCTGTTTT
TTTTTGTTTTTTTTTAGTTTTATTGCGCGCGTCTCGTTTGTTGTGACTAC
TGTACATACTTCGAAGTATATAGACAGCTACATATGGCGTGGGGATTTGA
GATCTCGGGTGGCGGCGCTTTCCCCCCTCCCTCTGCCTCATGTGTTCAAC
ATATCTACCAGGTATGTTGTTTTCTTTCGCACCGAGGTTGCCTTGCCGGA
CCGCTTGCTGGCCCAGACGGCGGAAGGGTCCTCGCGGTTGGGTGCGAAGC
GCGCCTCCCTCTGGACGCTTCTGCTGCGATAAATATATGCCGACGCCCCC
CCCGCCTCCTCTCTTGATCTTCACTCTTTAATCTTCTTCTTATTTCTCCT
CAGGCCGCCAGACGGCTGGTGGAGGACTTCTACCGCTCCAAGGGCTGCGA
GCCCACCGCCCTCCGGCCCCCTTCGACGGCCTTTCGCGCCGGAGCTTCTG
CTGCCACCCCCCCCGCTCATCGCGCCGGCCTCCTGCTGCCGCACCCCGCC
GAGCCGACGGGGGCGATGATTGGGCGTCTGGGGAGGGCAACGTCTGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9032:3975..5422-

>mRNA_L-elsbetiae_contig9032.18062.1 ID=mRNA_L-elsbetiae_contig9032.18062.1|Name=mRNA_L-elsbetiae_contig9032.18062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig9032:3975..5422- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGAGAGCAGGGCTACGATCGTGCTCAAGACCTACCAGGACAGGAG
CGGCCACGACGTCGTGATCCACGGCACCCCTGCCGCCGTCCAGATGAGAG
AGAGCAGGGCTACGATCGTGCTCAAGACCTACCAGGACAGGAGCGGCCAC
GACGTCGTGATCCACGGCACCCCTGCCGCCGTCCAGGCCGCCAGACGGCT
GGTGGAGGACTTCTACCGCTCCAAGGGCTGCGAGCCCACCGCCCTCCGGC
CCCCTTCGACGGCCTTTCGCGCCGGAGCTTCTGCTGCCACCCCCCCCGCT
CATCGCGCCGGCCTCCTGCTGCCGCACCCCGCCGAGCCGACGGGGGCGAT
GATTGGGCGTCTGGGGAGGGCAACGTCTGAGGCCGCCAGACGGCTGGTGG
AGGACTTCTACCGCTCCAAGGGCTGCGAGCCCACCGCCCTCCGGCCCCCT
TCGACGGCCTTTCGCGCCGGAGCTTCTGCTGCCACCCCCCCCGCTCATCG
CGCCGGCCTCCTGCTGCCGCACCCCGCCGAGCCGACGGGGGCGATGATTG
GGCGTCTGGGGAGGGCAACGTCTGAG
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