mRNA_L-elsbetiae_contig9031.18059.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9031.18059.1
Unique NamemRNA_L-elsbetiae_contig9031.18059.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9031.18059.1 vs. uniprot
Match: D7FII6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII6_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.210e-13
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   67 QVLDLQLAFEAVHGRVGADASSVMRAFGPGASYSDAASRAFSFDEAATASRPLDTSTLG 243
            ++LDLQLAFEA+HGR GAD  +V+RAFG   SYSDAA RA S +EA+T  RP+DT+TLG
Sbjct:  441 RILDLQLAFEALHGRFGADVVTVLRAFGQQVSYSDAAFRALSCEEASTMRRPIDTTTLG 499
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9031.18059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FII6_ECTSI8.210e-1366.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9031contigL-elsbetiae_contig9031:3010..4175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9031.18059.1prot_L-elsbetiae_contig9031.18059.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9031 3010..4174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.93152-CDS-L-elsbetiae_contig9031:3009..30791622816978.93152-CDS-L-elsbetiae_contig9031:3009..3079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 3010..3079 +
1691683956.820212-CDS-L-elsbetiae_contig9031:3009..30791691683956.820212-CDS-L-elsbetiae_contig9031:3009..3079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 3010..3079 +
1622816978.9428551-CDS-L-elsbetiae_contig9031:3488..36001622816978.9428551-CDS-L-elsbetiae_contig9031:3488..3600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 3489..3600 +
1691683956.8309402-CDS-L-elsbetiae_contig9031:3488..36001691683956.8309402-CDS-L-elsbetiae_contig9031:3488..3600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 3489..3600 +
1622816978.9552188-CDS-L-elsbetiae_contig9031:4098..41741622816978.9552188-CDS-L-elsbetiae_contig9031:4098..4174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 4099..4174 +
1691683956.840998-CDS-L-elsbetiae_contig9031:4098..41741691683956.840998-CDS-L-elsbetiae_contig9031:4098..4174Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 4099..4174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9031.18059.1

>prot_L-elsbetiae_contig9031.18059.1 ID=prot_L-elsbetiae_contig9031.18059.1|Name=mRNA_L-elsbetiae_contig9031.18059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
NPRWPGLAAQPALPAAGRPEDDQVLDLQLAFEAVHGRVGADASSVMRAFG
PGASYSDAASRAFSFDEAATASRPLDTSTLGNTAMA
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mRNA from alignment at L-elsbetiae_contig9031:3010..4175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9031.18059.1 ID=mRNA_L-elsbetiae_contig9031.18059.1|Name=mRNA_L-elsbetiae_contig9031.18059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1166bp|location=Sequence derived from alignment at L-elsbetiae_contig9031:3010..4175+ (Laminarionema elsbetiae ELsaHSoW15)
AACCCGCGCTGGCCAGGCCTTGCTGCACAGCCAGCTTTGCCCGCTGCTGG
CAGACCAGAGGACGACCAAGGTGAGATACCTTTGTCGTCGTGGAAATATA
TCTTGTCGTTGTAAGCTCTCTGCTTTCATGTGCAGAAGAGATTTATCCTC
AAGCGCAAGGCGCGCGAGACAATAATACATCTCTAGTGCGCGCACTGCCC
TTCACCACCCGTTTCAGGATCGTATGATGGGTACATATGTTCTACATTTT
GCCAGTGAAAATACATCGCACACACGAGCAGCGTAGCTCGGTCGCTGTTT
TTTTTCTGCATCCATTCTGGACGCCAGTTTATATGCGTGGGGGCGCGCAC
GTACACCTCCAAGATCTGCCGTGTCTCGACGCACCTCTCGCGCCTCCGTT
GATGTAGGTAGTGCACAACTTCAATAACAGCGCATTGCCTTGTGGCGGTA
CTTCGGTGCCGGATTTGCAATCCGTCAAGTCCTGGACCTTCAGCTGGCTT
TCGAAGCCGTGCACGGCCGCGTCGGCGCGGATGCTTCTTCGGTGATGAGA
GCTTTTGGGCCGGGTGCCTCTTACAGCGACGCTGCCTCCAGGTGCCATTT
GTTTTCTTCGTCCCTCTTGGTATCATGTCCCCACGGTGGACCTGCTGGCC
CTATTTACCACTTCTGCTGCTGCTGTTGTTGTTGTTGCTGCTGCTGCTGC
TGCTGCTGCTGTAGAATACGTGGCGAGCACCCAGTTGGTGTTGACTGCAG
ACGGAAATACCCTGTGCAAACGCCAGCAAGTAAATGGCGAATCCCATCGA
GTTCGGCGCAGAAGCTCCACCACTGTGCCTGCATACGGCACAGCATGCGT
AGATTGAAGTTGCTGCCGCGTCGAAGATTTGGCGGCTGTACGGCGGAACG
AGCACCGCCCGGGAGTGGTAATCCATAGAAAAACTACCGAGAAAGTGCAT
AGGCGCTCCAAATTTAACCAGTACTCCATGCAGTTCATCACGCAGAATCC
GGCTCACTGTGGATGCTACCTCCGCATTCCCGCAGTTCTGCTGTATTTGT
CAACACACTTGTGACGGTTTGGTATGCTGTTGATAGCAGGGCGTTCAGCT
TTGATGAGGCTGCAACCGCGAGTAGACCCTTGGACACCAGCACGCTGGGG
AACACCGCGATGGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9031:3010..4175+

>mRNA_L-elsbetiae_contig9031.18059.1 ID=mRNA_L-elsbetiae_contig9031.18059.1|Name=mRNA_L-elsbetiae_contig9031.18059.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig9031:3010..4175+ (Laminarionema elsbetiae ELsaHSoW15)
AACCCGCGCTGGCCAGGCCTTGCTGCACAGCCAGCTTTGCCCGCTGCTGG
CAGACCAGAGGACGACCAAGAACCCGCGCTGGCCAGGCCTTGCTGCACAG
CCAGCTTTGCCCGCTGCTGGCAGACCAGAGGACGACCAAGTCCTGGACCT
TCAGCTGGCTTTCGAAGCCGTGCACGGCCGCGTCGGCGCGGATGCTTCTT
CGGTGATGAGAGCTTTTGGGCCGGGTGCCTCTTACAGCGACGCTGCCTCC
AGTCCTGGACCTTCAGCTGGCTTTCGAAGCCGTGCACGGCCGCGTCGGCG
CGGATGCTTCTTCGGTGATGAGAGCTTTTGGGCCGGGTGCCTCTTACAGC
GACGCTGCCTCCAGGGCGTTCAGCTTTGATGAGGCTGCAACCGCGAGTAG
ACCCTTGGACACCAGCACGCTGGGGAACACCGCGATGGCAGGCGTTCAGC
TTTGATGAGGCTGCAACCGCGAGTAGACCCTTGGACACCAGCACGCTGGG
GAACACCGCGATGGCA
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