mRNA_L-elsbetiae_contig9031.18056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9031.18056.1
Unique NamemRNA_L-elsbetiae_contig9031.18056.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A6H5JE99_9PHAE (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE99_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.450e-28
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = -3
Query:   19 TRKYRVRECNGGDDYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNG-DNGQGKETIVGFICGFVSQSRTGE 312
            +R+YRVR C+G +DYS VIG +DAWWGGRRVSPMLPRLFF+NF  T+F+  I D++   Q A             D  Q  E IVGF+CGFVSQSR GE
Sbjct:   13 SRRYRVRTCSGSEDYSAVIGLVDAWWGGRRVSPMLPRLFFDNFCDTTFMAVIRDEE--AQKAEXXXXXXXXXXAADTTQRDEVIVGFLCGFVSQSRAGE 109          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A538HCD9_9ACTN (GNAT family N-acetyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HCD9_9ACTN)

HSP 1 Score: 69.7 bits (169), Expect = 4.520e-12
Identity = 41/118 (34.75%), Postives = 53/118 (44.92%), Query Frame = -3
Query:   28 SPLSAARLGERHCTRPAPTTMSSTRKYRVRECNGGDDYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSR 381
            +P++      R C    P    S     +R    GD ++ V   LDAWWGGR +  MLPRLFFE+F  TSFV   D +                           IVGF+CGF+SQ+R
Sbjct:   11 TPVTVRAAAARVCHGTVPDVEQSLPVVTIRHAEPGD-HARVSPHLDAWWGGRAMRAMLPRLFFEHFRDTSFVAETDGE---------------------------IVGFLCGFLSQTR 100          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A1F8LQK0_9CHLR (GNAT family N-acetyltransferase n=1 Tax=Chloroflexi bacterium RBG_13_48_10 TaxID=1797620 RepID=A0A1F8LQK0_9CHLR)

HSP 1 Score: 68.9 bits (167), Expect = 5.210e-12
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = -3
Query:   19 DDYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSRTGE 276
            DDY  +I SLD WWGGR++S MLPRLFFE+F  TSF++  D +                           IV F+ GF+SQS+  E
Sbjct:    9 DDYPSIIASLDEWWGGRKMSTMLPRLFFEHFGDTSFIIEEDGK---------------------------IVAFLIGFLSQSQPEE 67          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A0C1U3T4_9CLOT (N-acetyltransferase domain-containing protein n=2 Tax=Clostridium TaxID=1485 RepID=A0A0C1U3T4_9CLOT)

HSP 1 Score: 66.2 bits (160), Expect = 5.870e-11
Identity = 32/81 (39.51%), Postives = 44/81 (54.32%), Query Frame = -3
Query:   31 DYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQS 273
            DY+ VI  +DAWWGGR +S MLPRLFF++F +TSF+   +D+                           I+GF+ GF+SQS
Sbjct:   10 DYTEVITEIDAWWGGRHMSDMLPRLFFKHFQNTSFIAEENDK---------------------------IIGFLIGFISQS 63          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A6I5PFB8_9CYAN (GNAT family N-acetyltransferase n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PFB8_9CYAN)

HSP 1 Score: 65.1 bits (157), Expect = 1.560e-10
Identity = 32/85 (37.65%), Postives = 43/85 (50.59%), Query Frame = -3
Query:   19 DYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSRTGE 273
            DY  +I  LDAWWGGRR+S MLP+LFF +F  TSF+  I+ +                           +VGF+ GF+SQ+   E
Sbjct:   10 DYKTIIHVLDAWWGGRRMSDMLPKLFFVHFCETSFIAEINSE---------------------------VVGFLIGFLSQTHAKE 67          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A231W2Z7_9BACI (GNAT family N-acetyltransferase n=2 Tax=Bacillus TaxID=1386 RepID=A0A231W2Z7_9BACI)

HSP 1 Score: 64.3 bits (155), Expect = 3.140e-10
Identity = 31/83 (37.35%), Postives = 44/83 (53.01%), Query Frame = -3
Query:   25 DYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSRT 273
            DY V+   ++ WWGGR++S MLP+LFF++F+HTSF+   D Q                           I+GF+ GF+SQS T
Sbjct:   10 DYYVISPLINEWWGGRQMSNMLPKLFFDHFNHTSFIAEKDGQ---------------------------IIGFLIGFLSQSNT 65          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: UPI001ADFCAB6 (GNAT family N-acetyltransferase n=1 Tax=Bacillus sp. RG28 TaxID=2820819 RepID=UPI001ADFCAB6)

HSP 1 Score: 64.3 bits (155), Expect = 3.140e-10
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = -3
Query:   19 GDDYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSRTGE 279
            G DY  +   ++ WWGGR +S MLP+LFF++F++TSF+V  D+Q                           IVGF+ GF+SQ+ + E
Sbjct:    8 GSDYYAISPLINEWWGGRNMSDMLPKLFFDHFTNTSFIVEDDEQ---------------------------IVGFLIGFLSQTHSNE 67          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: UPI001B1643A3 (GNAT family N-acetyltransferase n=1 Tax=Paenibacillus sp. J2TS4 TaxID=2807194 RepID=UPI001B1643A3)

HSP 1 Score: 64.3 bits (155), Expect = 3.140e-10
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = -3
Query:   19 GDDYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSRTGE 279
            G DY  +   ++ WWGGR +S MLP+LFF++F++TSF+  +D +                           IVGF+ GF+SQS+T E
Sbjct:    8 GSDYYTLSPLINEWWGGRNMSDMLPKLFFDHFTNTSFIAEMDGE---------------------------IVGFLIGFLSQSQTNE 67          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A559J0W0_9BACL (GNAT family N-acetyltransferase n=1 Tax=Paenibacillus sp. N4 TaxID=2590547 RepID=A0A559J0W0_9BACL)

HSP 1 Score: 64.3 bits (155), Expect = 3.390e-10
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = -3
Query:   31 DYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQS 273
            DY  ++  +D WWGGR+++ MLP+LFF++F+HTSF+V                           QGKE I GF+ GFVSQ+
Sbjct:   10 DYIPIVAVIDEWWGGRKMADMLPKLFFQHFTHTSFIVE--------------------------QGKERI-GFLIGFVSQT 63          
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Match: A0A7V8XGA3_9ACTN (GNAT family N-acetyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8XGA3_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 3.750e-10
Identity = 36/85 (42.35%), Postives = 48/85 (56.47%), Query Frame = -3
Query:   19 DYSVVIGSLDAWWGGRRVSPMLPRLFFENFSHTSFVVAIDDQQPPTQPARQEPTAANADNGDNGQGKETIVGFICGFVSQSRTGE 273
            D+  VIG L+AWWGGR ++PMLPRLFF +F  TS+VV  DD+                    +GQ    + GF+ GF+SQ+R  E
Sbjct:   10 DHGRVIGRLNAWWGGRDMAPMLPRLFFVHFEGTSYVV--DDE--------------------HGQ----LAGFLIGFLSQTRADE 68          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9031.18056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE99_9PHAE4.450e-2856.57N-acetyltransferase domain-containing protein n=2 ... [more]
A0A538HCD9_9ACTN4.520e-1234.75GNAT family N-acetyltransferase n=1 Tax=Actinomyce... [more]
A0A1F8LQK0_9CHLR5.210e-1240.70GNAT family N-acetyltransferase n=1 Tax=Chloroflex... [more]
A0A0C1U3T4_9CLOT5.870e-1139.51N-acetyltransferase domain-containing protein n=2 ... [more]
A0A6I5PFB8_9CYAN1.560e-1037.65GNAT family N-acetyltransferase n=1 Tax=Leptolyngb... [more]
A0A231W2Z7_9BACI3.140e-1037.35GNAT family N-acetyltransferase n=2 Tax=Bacillus T... [more]
UPI001ADFCAB63.140e-1035.63GNAT family N-acetyltransferase n=1 Tax=Bacillus s... [more]
UPI001B1643A33.140e-1035.63GNAT family N-acetyltransferase n=1 Tax=Paenibacil... [more]
A0A559J0W0_9BACL3.390e-1039.51GNAT family N-acetyltransferase n=1 Tax=Paenibacil... [more]
A0A7V8XGA3_9ACTN3.750e-1042.35GNAT family N-acetyltransferase n=1 Tax=Actinomyce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9031contigL-elsbetiae_contig9031:424..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size422
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.8190484-CDS-L-elsbetiae_contig9031:423..7381622816978.8190484-CDS-L-elsbetiae_contig9031:423..738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 424..738 +
1691683956.7762818-CDS-L-elsbetiae_contig9031:423..7381691683956.7762818-CDS-L-elsbetiae_contig9031:423..738Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9031 424..738 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.8324416-UTR-L-elsbetiae_contig9031:738..8451622816978.8324416-UTR-L-elsbetiae_contig9031:738..845Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9031 739..845 +
1691683956.7891507-UTR-L-elsbetiae_contig9031:738..8451691683956.7891507-UTR-L-elsbetiae_contig9031:738..845Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9031 739..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9031.18056.1prot_L-elsbetiae_contig9031.18056.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9031 424..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9031.18056.1

>prot_L-elsbetiae_contig9031.18056.1 ID=prot_L-elsbetiae_contig9031.18056.1|Name=mRNA_L-elsbetiae_contig9031.18056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MYGPSHLSGPRLRDEATDKSYNGLLSLPVVPVVRVRRRRLLARWLGWWLL
VIYGDHEARVAEVFKKEAWKHRGNSSPSPPGIQRADNYRVIVTPVALSHA
VLPG*
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mRNA from alignment at L-elsbetiae_contig9031:424..845+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9031.18056.1 ID=mRNA_L-elsbetiae_contig9031.18056.1|Name=mRNA_L-elsbetiae_contig9031.18056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=422bp|location=Sequence derived from alignment at L-elsbetiae_contig9031:424..845+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGGACCGTCTCACCTCTCCGGTCCTCGACTGCGAGACGAAGCCAC AGATAAATCCTACAATGGTCTCCTTTCCCTGCCCGTTGTCCCCGTTGTCC GCGTTCGCCGCCGTCGGCTCCTGGCGCGCTGGCTGGGTTGGTGGCTGCTG GTCATCTATGGCGACCACGAAGCTCGTGTGGCTGAAGTTTTCAAAAAAGA GGCGTGGAAGCATCGGGGAAACTCGTCTCCCTCCCCACCAGGCATCCAAC GAGCCGATAACTACCGAGTAATCGTCACCCCCGTTGCACTCTCGCACGCG GTACTTCCGGGTTGAGCTCATCGTCGTCGGAGCTGGCCGCGTGCAGTGCC GCTCTCCGAGTCTAGCTGCAGATAGGGGGCTGAATGTATATGCACCCGTC TGCGTCAGAGTTAGCAAGTAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9031:424..845+

>mRNA_L-elsbetiae_contig9031.18056.1 ID=mRNA_L-elsbetiae_contig9031.18056.1|Name=mRNA_L-elsbetiae_contig9031.18056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig9031:424..845+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGGACCGTCTCACCTCTCCGGTCCTCGACTGCGAGACGAAGCCAC
AGATAAATCCTACAATGGTCTCCTTTCCCTGCCCGTTGTCCCCGTTGTCC
GCGTTCGCCGCCGTCGGCTCCTGGCGCGCTGGCTGGGTTGGTGGCTGCTG
GTCATCTATGGCGACCACGAAGCTCGTGTGGCTGAAGTTTTCAAAAAAGA
GGCGTGGAAGCATCGGGGAAACTCGTCTCCCTCCCCACCAGGCATCCAAC
GAGCCGATAACTACCGAGTAATCGTCACCCCCGTTGCACTCTCGCACGCG
GTACTTCCGGGTTGAATGTATGGACCGTCTCACCTCTCCGGTCCTCGACT
GCGAGACGAAGCCACAGATAAATCCTACAATGGTCTCCTTTCCCTGCCCG
TTGTCCCCGTTGTCCGCGTTCGCCGCCGTCGGCTCCTGGCGCGCTGGCTG
GGTTGGTGGCTGCTGGTCATCTATGGCGACCACGAAGCTCGTGTGGCTGA
AGTTTTCAAAAAAGAGGCGTGGAAGCATCGGGGAAACTCGTCTCCCTCCC
CACCAGGCATCCAACGAGCCGATAACTACCGAGTAATCGTCACCCCCGTT
GCACTCTCGCACGCGGTACTTCCGGGTTGA
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