mRNA_L-elsbetiae_contig903.18055.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig903.18055.1
Unique NamemRNA_L-elsbetiae_contig903.18055.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig903.18055.1 vs. uniprot
Match: D7FIV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-10
Identity = 107/287 (37.28%), Postives = 137/287 (47.74%), Query Frame = 3 
Query:   54 LVLAWSSMG-CGSAEVVLEAASRQQRDLLAVTLETLVAGL---GGEDSSARASGASG---------DIAEDGRDDGDGLRWHDERSGSCSSDADEAYTS----------DXXXXXXXXXXAEFDRVASAAAAAVTGSRRTTLGPHETGVTPAAHSSDGDSELLFSPANGIASARRDDLSCSVTRRHQAHRKTAQQRSSSDSRPGLHRRGMSFSPGEAVPLGRVPV-LARSRTAGAAGLGGXXXXXXXXXXXXXEQDARVRREDAMARLLAVYDRARDESQAAAWRLG 842
            LVL+W S G  G ++++L AASR+ RDL+ +TLETLV GL   GG+  SA   G            +I   GR+         E++GS  SDA+ A  +           XXXXXXXX  A FD   +  A++    R   L                  E LFS     ASA R                ++++R+S     GLHRRG+SFS   A     V   L R+RT GA+ +G              E +AR RRE+AMARLLAVYDRARDE+ AAA RLG
Sbjct:  119 LVLSWGSAGEIGPSKLILAAASRELRDLVMLTLETLVDGLQGGGGDHVSAAGEGVGSTAAPHVVQQEIQVGGREG--------EQAGS--SDAEPAAPTATXXXXXXXXXXXXXXXXXVLARFDNDCADPASSAIRHRGGDL-----------------RERLFSSDAAAASAER----------------SSRRRASL----GLHRRGVSFSSAGADKAASVVHGLERARTVGASVIG---RESDAGLVLEQELEARRRREEAMARLLAVYDRARDETHAAACRLG 355
[Close]
BLAST of mRNA_L-elsbetiae_contig903.18055.1 vs. uniprot
Match: A0A6H5LDY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.620e-7
Identity = 45/84 (53.57%), Postives = 50/84 (59.52%), Query Frame = 3 
Query:  594 GLHRRGMSFSPGEAVPLGRVPV-LARSRTAGAAGLGGXXXXXXXXXXXXXEQDARVRREDAMARLLAVYDRARDESQAAAWRLG 842
            GLHRRG+SF    A     V   L R+ T GA+ +G              EQ+AR RRE AMARLLAVYDRARDE QAAA RLG
Sbjct:  396 GLHRRGVSFGSAGADKAASVDRGLERASTVGASVIG---RDRDAGLVLEHEQEARRRREQAMARLLAVYDRARDELQAAACRLG 476
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig903.18055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIV6_ECTSI2.290e-1037.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LDY4_9PHAE1.620e-753.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig903contigL-elsbetiae_contig903:28608..29449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size843
Cds size813
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.772286-UTR-L-elsbetiae_contig903:28607..286361622816978.772286-UTR-L-elsbetiae_contig903:28607..28636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 28608..28636 +
1691683956.757505-UTR-L-elsbetiae_contig903:28607..286361691683956.757505-UTR-L-elsbetiae_contig903:28607..28636Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 28608..28636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.7839222-CDS-L-elsbetiae_contig903:28636..294491622816978.7839222-CDS-L-elsbetiae_contig903:28636..29449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig903 28637..29449 +
1691683956.766904-CDS-L-elsbetiae_contig903:28636..294491691683956.766904-CDS-L-elsbetiae_contig903:28636..29449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig903 28637..29449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig903.18055.1prot_L-elsbetiae_contig903.18055.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig903 28637..29449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig903.18055.1

>prot_L-elsbetiae_contig903.18055.1 ID=prot_L-elsbetiae_contig903.18055.1|Name=mRNA_L-elsbetiae_contig903.18055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=271bp
MPGVEAYGLVLAWSSMGCGSAEVVLEAASRQQRDLLAVTLETLVAGLGGE
DSSARASGASGDIAEDGRDDGDGLRWHDERSGSCSSDADEAYTSDDDEAA
AALMLAEFDRVASAAAAAVTGSRRTTLGPHETGVTPAAHSSDGDSELLFS
PANGIASARRDDLSCSVTRRHQAHRKTAQQRSSSDSRPGLHRRGMSFSPG
EAVPLGRVPVLARSRTAGAAGLGGGSEAALLQQQEEQEQDARVRREDAMA
RLLAVYDRARDESQAAAWRLG
back to top

mRNA from alignment at L-elsbetiae_contig903:28608..29449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig903.18055.1 ID=mRNA_L-elsbetiae_contig903.18055.1|Name=mRNA_L-elsbetiae_contig903.18055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=842bp|location=Sequence derived from alignment at L-elsbetiae_contig903:28608..29449+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGCGTGGGTAGCGGGGACGACTGCTGTATGCCAGGTGTGGAGGCGTAC
GGGCTCGTGTTGGCATGGAGCAGCATGGGATGTGGGTCCGCGGAGGTTGT
GCTGGAGGCAGCATCTCGGCAGCAGAGGGACTTGTTGGCTGTGACGCTGG
AGACTCTGGTAGCTGGCCTTGGCGGGGAAGACAGCTCTGCCCGGGCATCA
GGTGCAAGCGGTGATATCGCAGAGGACGGCAGAGACGATGGTGATGGGCT
GCGGTGGCATGATGAGCGTTCGGGAAGTTGCAGCAGTGATGCCGACGAAG
CTTACACGAGCGATGACGACGAAGCGGCAGCGGCGCTGATGCTGGCGGAA
TTTGACAGGGTCGCTTCCGCAGCCGCCGCTGCCGTCACGGGCTCCCGGCG
GACGACCCTCGGCCCTCACGAGACCGGCGTCACCCCAGCAGCCCACAGCA
GCGACGGCGACAGCGAGCTGCTGTTCTCCCCCGCAAACGGCATTGCATCA
GCGCGACGAGACGATCTCTCGTGCTCCGTAACTCGTCGCCACCAGGCGCA
CCGAAAAACCGCCCAGCAGCGCAGCAGCAGCGACAGCCGCCCGGGCTTGC
ACAGGCGCGGCATGTCCTTCAGCCCCGGCGAGGCGGTGCCGCTCGGCCGC
GTGCCTGTTTTGGCTCGCTCGAGGACAGCGGGCGCGGCGGGGCTGGGAGG
CGGGAGCGAGGCCGCCCTGCTGCAGCAGCAGGAGGAGCAGGAGCAGGACG
CGAGGGTGCGGAGGGAGGACGCTATGGCGCGGCTGCTGGCGGTGTACGAC
AGGGCCAGGGACGAGTCGCAGGCGGCAGCGTGGCGCCTCGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig903:28608..29449+

>mRNA_L-elsbetiae_contig903.18055.1 ID=mRNA_L-elsbetiae_contig903.18055.1|Name=mRNA_L-elsbetiae_contig903.18055.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1626bp|location=Sequence derived from alignment at L-elsbetiae_contig903:28608..29449+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCAGGTGTGGAGGCGTACGGGCTCGTGTTGGCATGGAGCAGCATGGG
ATGTGGGTCCGCGGAGGTTGTGCTGGAGGCAGCATCTCGGCAGCAGAGGG
ACTTGTTGGCTGTGACGCTGGAGACTCTGGTAGCTGGCCTTGGCGGGGAA
GACAGCTCTGCCCGGGCATCAGGTGCAAGCGGTGATATCGCAGAGGACGG
CAGAGACGATGGTGATGGGCTGCGGTGGCATGATGAGCGTTCGGGAAGTT
GCAGCAGTGATGCCGACGAAGCTTACACGAGCGATGACGACGAAGCGGCA
GCGGCGCTGATGCTGGCGGAATTTGACAGGGTCGCTTCCGCAGCCGCCGC
TGCCGTCACGGGCTCCCGGCGGACGACCCTCGGCCCTCACGAGACCGGCG
TCACCCCAGCAGCCCACAGCAGCGACGGCGACAGCGAGCTGCTGTTCTCC
CCCGCAAACGGCATTGCATCAGCGCGACGAGACGATCTCTCGTGCTCCGT
AACTCGTCGCCACCAGGCGCACCGAAAAACCGCCCAGCAGCGCAGCAGCA
GCGACAGCCGCCCGGGCTTGCACAGGCGCGGCATGTCCTTCAGCCCCGGC
GAGGCGGTGCCGCTCGGCCGCGTGCCTGTTTTGGCTCGCTCGAGGACAGC
GGGCGCGGCGGGGCTGGGAGGCGGGAGCGAGGCCGCCCTGCTGCAGCAGC
AGGAGGAGCAGGAGCAGGACGCGAGGGTGCGGAGGGAGGACGCTATGGCG
CGGCTGCTGGCGGTGTACGACAGGGCCAGGGACGAGTCGCAGGCGGCAGC
GTGGCGCCTCGGGATGCCAGGTGTGGAGGCGTACGGGCTCGTGTTGGCAT
GGAGCAGCATGGGATGTGGGTCCGCGGAGGTTGTGCTGGAGGCAGCATCT
CGGCAGCAGAGGGACTTGTTGGCTGTGACGCTGGAGACTCTGGTAGCTGG
CCTTGGCGGGGAAGACAGCTCTGCCCGGGCATCAGGTGCAAGCGGTGATA
TCGCAGAGGACGGCAGAGACGATGGTGATGGGCTGCGGTGGCATGATGAG
CGTTCGGGAAGTTGCAGCAGTGATGCCGACGAAGCTTACACGAGCGATGA
CGACGAAGCGGCAGCGGCGCTGATGCTGGCGGAATTTGACAGGGTCGCTT
CCGCAGCCGCCGCTGCCGTCACGGGCTCCCGGCGGACGACCCTCGGCCCT
CACGAGACCGGCGTCACCCCAGCAGCCCACAGCAGCGACGGCGACAGCGA
GCTGCTGTTCTCCCCCGCAAACGGCATTGCATCAGCGCGACGAGACGATC
TCTCGTGCTCCGTAACTCGTCGCCACCAGGCGCACCGAAAAACCGCCCAG
CAGCGCAGCAGCAGCGACAGCCGCCCGGGCTTGCACAGGCGCGGCATGTC
CTTCAGCCCCGGCGAGGCGGTGCCGCTCGGCCGCGTGCCTGTTTTGGCTC
GCTCGAGGACAGCGGGCGCGGCGGGGCTGGGAGGCGGGAGCGAGGCCGCC
CTGCTGCAGCAGCAGGAGGAGCAGGAGCAGGACGCGAGGGTGCGGAGGGA
GGACGCTATGGCGCGGCTGCTGGCGGTGTACGACAGGGCCAGGGACGAGT
CGCAGGCGGCAGCGTGGCGCCTCGGG
back to top