mRNA_L-elsbetiae_contig903.18054.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig903.18054.1
Unique NamemRNA_L-elsbetiae_contig903.18054.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig903.18054.1 vs. uniprot
Match: A0A6H5LDY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 8.910e-13
Identity = 84/168 (50.00%), Postives = 96/168 (57.14%), Query Frame = 1 
Query:  319 KPKMAMERSSPPPPRLKPPRLPRRPVGLGVAAGKAPA-----------GTDNFIPPRGPPAFRPNDEDSCLDLAKLMLSPEGLAMKKITLEGFSIPVVLRLLDRRXXXXXXXXXXXXXXXXXXXXXAA------------------LSITWVPQDTFGFDMRGLTTRR 735
            KP M  E   P P   KPP LP RP     A  +  A           G D+     G  +   +DE   L LAKLMLS EGLAM+KITLEG+S+PV LRLLDRRXXXXXXXXXXXXXXXXXXXXX                    L+ITW+  DTFGFD+RG+T+ R
Sbjct:   33 KPPMKQETRRPSPRPRKPPLLPFRPSHPSSAVAEPDADAAAKRAAESIGADDDAAAAGLVSSAAHDE-RLLHLAKLMLSTEGLAMRKITLEGYSVPVALRLLDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXACGGASGEGITSPLLAITWLDSDTFGFDLRGVTSIR 199
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BLAST of mRNA_L-elsbetiae_contig903.18054.1 vs. uniprot
Match: D7FIV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV6_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-9
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:  514 MLSPEGLAMKKITLEGFSIPVVLRLLDRRXXXXXXXXXXXXXXXXXXXXXAA-----------LSITWVPQDTFGFDMRGLTTRR 735
            MLSPEGLAM+K+TLEG+S+PV LRLLDRRXXXXXXXXXXXXXXXXXXXXX             L+ITW+  DTFGFD+RG+T+ R
Sbjct:    1 MLSPEGLAMRKVTLEGYSVPVALRLLDRRXXXXXXXXXXXXXXXXXXXXXXXXASGEGIISPLLAITWLDSDTFGFDLRGVTSIR 85
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig903.18054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDY4_9PHAE8.910e-1350.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV6_ECTSI1.520e-969.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig903contigL-elsbetiae_contig903:27052..28567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size756
Cds size429
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig903.18054.1prot_L-elsbetiae_contig903.18054.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig903 28139..28567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.7197323-UTR-L-elsbetiae_contig903:27051..271171622816978.7197323-UTR-L-elsbetiae_contig903:27051..27117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 27052..27117 +
1691683956.7236102-UTR-L-elsbetiae_contig903:27051..271171691683956.7236102-UTR-L-elsbetiae_contig903:27051..27117Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 27052..27117 +
1622816978.730216-UTR-L-elsbetiae_contig903:27877..281381622816978.730216-UTR-L-elsbetiae_contig903:27877..28138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 27878..28138 +
1691683956.7340937-UTR-L-elsbetiae_contig903:27877..281381691683956.7340937-UTR-L-elsbetiae_contig903:27877..28138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig903 27878..28138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.7406526-CDS-L-elsbetiae_contig903:28138..285671622816978.7406526-CDS-L-elsbetiae_contig903:28138..28567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig903 28139..28567 +
1691683956.747937-CDS-L-elsbetiae_contig903:28138..285671691683956.747937-CDS-L-elsbetiae_contig903:28138..28567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig903 28139..28567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig903.18054.1

>prot_L-elsbetiae_contig903.18054.1 ID=prot_L-elsbetiae_contig903.18054.1|Name=mRNA_L-elsbetiae_contig903.18054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MAMERSSPPPPRLKPPRLPRRPVGLGVAAGKAPAGTDNFIPPRGPPAFRP
NDEDSCLDLAKLMLSPEGLAMKKITLEGFSIPVVLRLLDRRRPQQEQQEQ
QQQRFFSTSNAAAALSITWVPQDTFGFDMRGLTTRRVEGCGGK
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mRNA from alignment at L-elsbetiae_contig903:27052..28567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig903.18054.1 ID=mRNA_L-elsbetiae_contig903.18054.1|Name=mRNA_L-elsbetiae_contig903.18054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1516bp|location=Sequence derived from alignment at L-elsbetiae_contig903:27052..28567+ (Laminarionema elsbetiae ELsaHSoW15)
TCGAAACCACGGCAGGACTCCAAGCCCTCTTTCAAACTGTAGACCCCCCC
CTGTTTAGGTGCTGAGGTAGGATCTATGTTAACCCACTTCGGACTTGCCG
GAGGCGCGACCCAGAATCTGTGTATCTAGACTATGTATGTATATAGTCTA
TGTAGTTTGCATCACTAGATAGATACTTCTATGTACTTCGTACATCTAGA
TAGACTATGGCGTAGACTATGTATGTATCTATATCTACAAGAAGACTCGT
AGATACAGGTCTGCATCATCGATAGACTTATCTAGTCTAGACTAGATAGA
TAGATATTATAAGTCCTAGACTATATCTCTAGATATCTAGACTAGACTAG
TCTACCTAAATAAAATATAGACTAGACATAGACTATATCTATATCTATGT
GTAGACTATGGGGTGTTTTTTTATTTTATTAATTAATTATTTAGACTATG
GGTTGGGGCAGGAATATACGTATATGCATATTGTATCATATGACTATGGA
CTAGTCTAGATAGGTATCTAATCTAAGATCTTAAGACAAGACTAGACTAA
ACTAGTCTATCACTCATAACTACTGTATGTAGATTCACGCTGCTTTGCGC
ACCAACGACACGGAGTGCTTCCTGCTGCGGCTGCTGGTGCTATATAGTGT
CTGCGACTCTTCTTTAGCCTAGGACTTTCTCGGTAGCTCTCAAACGGGGT
GTCAGGACGAGCCTGATCAGCTCAGTGCACGTTCCAGAAGATCGGGGGTT
CCGCACACTTGATAAATTAGGGCCCGCACAACATCTGCGTCCCCCCGCCC
CAATTTTCTTCTGGGACTGAAACCAGCTGCCAGGCGACGCTGAACCTGCA
TTACCAGACAGCAGACAGGGGAAGGCACGAGATAATTTGTGGCACACAAC
AGCTACGCACCTGCAGCGCTCTCGATCTCTGTCTATCTCTTCCTCTGATG
GTGGTGGTGGGCGCTACCTTCAATCAAACCGTGATTTCCCGCGAAGCTTG
AGCTTTTTGCCACGAGGGCGTGCATGTGCAAGGAGGAGGGCAGACTGTGA
CGACACTCCGAGCGCCTTTGGGTTGCCAAAGCCCAAGATGGCCATGGAAA
GGAGTTCGCCCCCCCCTCCTCGTCTCAAGCCCCCCCGTCTCCCTCGTCGG
CCTGTGGGGCTTGGAGTGGCTGCTGGCAAGGCGCCGGCCGGCACCGACAA
CTTTATTCCGCCGCGCGGTCCTCCTGCATTCAGGCCGAACGACGAAGACT
CGTGCTTGGACTTGGCCAAGCTCATGCTCTCGCCTGAGGGTCTGGCCATG
AAGAAGATTACCCTCGAGGGATTTTCGATCCCTGTGGTCCTTCGTCTTCT
CGACCGGCGGCGCCCGCAGCAGGAACAGCAGGAACAGCAGCAGCAACGGT
TTTTTTCGACCTCCAATGCAGCGGCGGCGCTGTCGATCACGTGGGTCCCT
CAGGACACCTTCGGCTTCGACATGCGTGGGTTAACCACCCGCAGGGTTGA
GGGCTGCGGTGGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig903:27052..28567+

>mRNA_L-elsbetiae_contig903.18054.1 ID=mRNA_L-elsbetiae_contig903.18054.1|Name=mRNA_L-elsbetiae_contig903.18054.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig903:27052..28567+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCATGGAAAGGAGTTCGCCCCCCCCTCCTCGTCTCAAGCCCCCCCG
TCTCCCTCGTCGGCCTGTGGGGCTTGGAGTGGCTGCTGGCAAGGCGCCGG
CCGGCACCGACAACTTTATTCCGCCGCGCGGTCCTCCTGCATTCAGGCCG
AACGACGAAGACTCGTGCTTGGACTTGGCCAAGCTCATGCTCTCGCCTGA
GGGTCTGGCCATGAAGAAGATTACCCTCGAGGGATTTTCGATCCCTGTGG
TCCTTCGTCTTCTCGACCGGCGGCGCCCGCAGCAGGAACAGCAGGAACAG
CAGCAGCAACGGTTTTTTTCGACCTCCAATGCAGCGGCGGCGCTGTCGAT
CACGTGGGTCCCTCAGGACACCTTCGGCTTCGACATGCGTGGGTTAACCA
CCCGCAGGGTTGAGGGCTGCGGTGGCAAGATGGCCATGGAAAGGAGTTCG
CCCCCCCCTCCTCGTCTCAAGCCCCCCCGTCTCCCTCGTCGGCCTGTGGG
GCTTGGAGTGGCTGCTGGCAAGGCGCCGGCCGGCACCGACAACTTTATTC
CGCCGCGCGGTCCTCCTGCATTCAGGCCGAACGACGAAGACTCGTGCTTG
GACTTGGCCAAGCTCATGCTCTCGCCTGAGGGTCTGGCCATGAAGAAGAT
TACCCTCGAGGGATTTTCGATCCCTGTGGTCCTTCGTCTTCTCGACCGGC
GGCGCCCGCAGCAGGAACAGCAGGAACAGCAGCAGCAACGGTTTTTTTCG
ACCTCCAATGCAGCGGCGGCGCTGTCGATCACGTGGGTCCCTCAGGACAC
CTTCGGCTTCGACATGCGTGGGTTAACCACCCGCAGGGTTGAGGGCTGCG
GTGGCAAG
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