mRNA_L-elsbetiae_contig9028.18050.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9028.18050.1
Unique NamemRNA_L-elsbetiae_contig9028.18050.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig9028.18050.1 vs. uniprot
Match: D8LRA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA4_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.370e-31
Identity = 62/77 (80.52%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:  535 SSPALLALLLVLKSFLKHLSSLRRGEKFCIVWNEFLCCLEILLGTVGTAPPTLVDGAAAGLGAVLGEMHREGLFAAA 765
            SSPALLALLL+LKSFLKHLS+LRRG++FC VW +FLCCLEILLGT G APPTLVDGA  GLGAV+GEM  EGLFA+A
Sbjct:   75 SSPALLALLLMLKSFLKHLSALRRGDRFCEVWRQFLCCLEILLGTEGNAPPTLVDGAVTGLGAVVGEMIGEGLFASA 151
[Close]
BLAST of mRNA_L-elsbetiae_contig9028.18050.1 vs. uniprot
Match: A0A6H5KYE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.900e-27
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:  526 QQLSSPALLALLLVLKSFLKHLSSLRRGEKFCIVWNEFLCCLEILLGTVGTAPPTLVDGAAAGLGAVLGEMHREGLFAAASSA 774
            +Q+SS ALLALLL+LKSFLKHLS+LRRG++FC VW +FLCCLEILLGT G APPTLVDGA  GLGAV+GEM  EGLFA A +A
Sbjct:  334 RQVSSLALLALLLMLKSFLKHLSALRRGDQFCEVWCQFLCCLEILLGTEGNAPPTLVDGAVTGLGAVVGEMIGEGLFAFAVAA 416
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9028.18050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRA4_ECTSI4.370e-3180.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYE6_9PHAE1.900e-2775.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9028contigL-elsbetiae_contig9028:111..3229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003260.1
Exons3
Model size774
Cds size774
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9028.18050.1prot_L-elsbetiae_contig9028.18050.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9028 111..3229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.4711933-CDS-L-elsbetiae_contig9028:110..4371622816978.4711933-CDS-L-elsbetiae_contig9028:110..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9028 111..437 +
1691683956.5490232-CDS-L-elsbetiae_contig9028:110..4371691683956.5490232-CDS-L-elsbetiae_contig9028:110..437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9028 111..437 +
1622816978.4853985-CDS-L-elsbetiae_contig9028:467..7761622816978.4853985-CDS-L-elsbetiae_contig9028:467..776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9028 468..776 +
1691683956.5596724-CDS-L-elsbetiae_contig9028:467..7761691683956.5596724-CDS-L-elsbetiae_contig9028:467..776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9028 468..776 +
1622816978.4974802-CDS-L-elsbetiae_contig9028:3091..32291622816978.4974802-CDS-L-elsbetiae_contig9028:3091..3229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9028 3092..3229 +
1691683956.5721025-CDS-L-elsbetiae_contig9028:3091..32291691683956.5721025-CDS-L-elsbetiae_contig9028:3091..3229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9028 3092..3229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9028.18050.1

>prot_L-elsbetiae_contig9028.18050.1 ID=prot_L-elsbetiae_contig9028.18050.1|Name=mRNA_L-elsbetiae_contig9028.18050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
QVVLDGLAEEAPPEMLQDVMLAIVFPLARHTWGVAAFGGEQQQRWSHHDP
PSLSSTQLSNRRSRNAAETPPPPPPPPPSQNERQGVESTSRRHRAERGDS
AAGGVTMVAEGEEGEDGFEMVEAPEKTGHSSHTDAAASALTLSREPSEAM
GDGEDAEDDNGGGDNDSDSDSEVELQQLSSPALLALLLVLKSFLKHLSSL
RRGEKFCIVWNEFLCCLEILLGTVGTAPPTLVDGAAAGLGAVLGEMHREG
LFAAASSA
back to top

mRNA from alignment at L-elsbetiae_contig9028:111..3229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9028.18050.1 ID=mRNA_L-elsbetiae_contig9028.18050.1|Name=mRNA_L-elsbetiae_contig9028.18050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3119bp|location=Sequence derived from alignment at L-elsbetiae_contig9028:111..3229+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTGTGTTGGATGGCCTTGCCGAGGAAGCACCCCCTGAGATGCTGCA
AGATGTTATGCTTGCCATCGTGTTTCCTCTGGCAAGGCACACCTGGGGTG
TGGCGGCGTTCGGAGGGGAGCAACAGCAGCGGTGGAGTCACCACGACCCA
CCGTCTCTGTCGTCGACCCAGCTGTCAAACCGCCGAAGCCGAAACGCAGC
TGAGACACCACCACCACCACCACCACCACCACCGTCTCAAAACGAAAGGC
AAGGGGTTGAAAGCACCAGCCGGCGGCATCGTGCCGAGCGCGGCGACAGC
GCCGCCGGTGGCGTCACAATGGTGGCAGTGCCGTCACAAGCAGTTCTGCA
AGCCGAGGAGGGCGAGGAAGGAGAGGATGGTTTCGAGATGGTCGAGGCCC
CCGAAAAAACGGGCCACTCTTCACACACCGATGCCGCTGCCTCAGCACTG
ACGCTCAGTCGCGAGCCCTCGGAGGCAATGGGCGACGGGGAGGATGCAGA
GGACGACAACGGCGGCGGCGACAACGACAGCGACAGCGACAGCGAGGTCG
AGTTGCAGCAGCTCTCGAGCCCGGCGCTCCTGGCCCTACTGTTGGTGCTC
AAGTCGTTCCTCAAGCACCTGTCTTCACTTCGGCGGGGGGAGAAATTTTG
TATTGTCTGGAATGAGGTGAGTATTTATAGAAGTATCGGGGAGGTCGTCC
GTGGTGTCTTTTTTTGTCGCTCGTGAGACAACACGCAGATGCAGCCGATA
CGTGTGGAGATACATAGGTGCGCAGGATGGTACAGCGCGTTAGTTTTTTT
GTAGGATTGCATACGTGTCGGGCCCGCAGGTGGCGGGATGTGTTGACTGC
TGCCGACAATATTCCCGCAGCCTGGCTCCTTCTCTCTCTCTGGTGTACCT
GTCTCTCTCCGTCTCTCTCTTCCTGCCCCTCTTTAGTACTCCTTGTAGCT
ATCTTTTCTTGTGACAAAAAAAATCAAAATCGCTCAAAAAGTGACCCCTT
TCCCACGTTATAATCCTTATTGATTTCAGCTTTTTGCGGCTATCTTTCTC
GAACTCAAACCAAATGACTATTCCTTGCACGGGCACCTCAACACACGGCA
GTAGCTGCTCTGTGCCAAGTGGCAACCTCGATCTCGAACGTTTCGATCAG
ATACGGCCGTCGACTTTTGAAGCATACTCTGTAACCCCTATTGTATTGAT
GTCGGAGATGTTCGTTTTTTAGGGATACCTTTCTCAAAGACGAGGCAATC
GCTTATTCCTTCCGCGGGCGCCTCGACACACAACCGTAGCTGCTCTCTGC
CAAGTCTCAATTGTCAATCTCCAAGTTTGTCATCAGATACGACCGTCGCA
TCTTATCACCCGATGTTTACGGCAGTCATAATGACACACACGATGCACAC
AACACAGCAATGCACACCACACTAGACGACCGAACAAGATATGTGAACAC
ACAGCAGCAGCGCATCGGTGCTGTTTCCCGTTGTGTCAGCAGCAGAGAGA
GGTTGACAGGTAGGTGGGGTTGTCAGGGTTTGCAATAGCAACCGACGCTG
TGCTGCTCGCGTCGTTTGTTCGAACCCTGCGGAGGTCTCGTCTTTGCGTT
CCCCACCACCCTCCAACTCCGCAGACGTTCCCACTGCTTCCTACATCATC
ATCTGTGTGGTATGAACGGTATCGGCTGTCATCTTTGGAGGTGTAAATTG
CGTTACTTTGTCTAAAGTAGTCTTCTGCTGTCTTTCCAGTGCGCGGTCAC
CGTGGTGAAAAAAACAATTTTCTTTGCAGTGTCCAGTGGGGTTTGTACAT
TATTTCGCACGAAGCACAAAACAACACACAAAGAGGCGTTCTTTTTTGCT
GCGGGTGTTGAGCGTGACTTCTTGACGAGCTCTGCAGTGAGGTTGTACTC
GATTTCTATACGATTTTTTACATAGTTCTCCAGTTAACCTCAAGGATTCC
TTTCACCTCTCCATTGGTTTAGTGTCCAAACAATGTACACCCATACAACA
ACCAGCGGCAGCAGGTGCACCAGCATATCTATACTCCTAATATATGTACA
TAATAGTCTATATTTTGTGGGTGCTGTGATGGTATCCGGGTCTGCACGTT
CCGCCATTACATCGTTTTGCATGTTTGCCTGCCGTCCGAGTGTTTTCAAT
AGGCAACATGGGTTCTCAGAGCTGTCCGGACGTTGTCGGGAGTGCCAACG
GCCGCCGTAGCTCATATTGTGTGACATGCTCTCTCTCTTCTTTCCGTTCG
ATGGCCATCTGCTTGGCATATTTGCTCTTCCTTCTCTGCGCTACCGTACG
CTGGCATCTACTTTGCTGCATTTGATTTTTGCGTCCAAGCATTTTATGTT
AAGCAACGAGCGTCCCCAGAGGTGTCCGCACACCGTCGGGAGTGCCAACT
GTGCGGCTGTAGTACATGTTTGGGTCGCGTGCTCTTCAGCACATGTTTGC
GTCGCGTGCTCTTTTTGACGTTAGTCAACGAGTGTTTTCAGACGTCTGTA
CGTTGCCGGGAGTGTCAACGGCGGCCGAGGTACATACATATGTTGTGTTG
CATACTCTTTCCGTTCGATGGCTCTCTGTTCTGCTTTTCTGCCTGTCGTC
CAAGTTTGTTTGCGCACCCAACACATGATAGTAGTGCAACGAGCGTCCCC
AGAGGTGTCCGTACACCGTCGGGAGTGCCAACTGTGTGGCTGTAGTACAT
GTTTGCGTCGCGTGCTCTTTTTTTCTTTCACTGTTATTTTCATTCCAGGG
CCATCTGCGTGGCATGTACGCCTGCCATCCAAGTTTTGTATCATCATACA
GAGAGTCTCTAAAGTGAAAAGAAAATTGGTGCGCGCGATGCCCCAGGCAG
AGCAATCTATAAAAAAAACATCATACAGCAGTTTGCTCCTCGGATTACGT
TTCAAGGTAACGCATCCTTCACCCGTCGGCATGCCTTCCCCCCCCCCCCC
GCGCCCGCGCCTTTCTCTGCCCGGGACACAGTTTCTGTGCTGCCTGGAGA
TCCTGCTTGGCACGGTGGGGACCGCGCCTCCGACGCTGGTGGATGGCGCG
GCGGCCGGCCTTGGCGCGGTGCTTGGGGAGATGCACAGAGAAGGACTCTT
TGCCGCTGCTTCCTCTGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig9028:111..3229+

>mRNA_L-elsbetiae_contig9028.18050.1 ID=mRNA_L-elsbetiae_contig9028.18050.1|Name=mRNA_L-elsbetiae_contig9028.18050.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig9028:111..3229+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTGTGTTGGATGGCCTTGCCGAGGAAGCACCCCCTGAGATGCTGCA
AGATGTTATGCTTGCCATCGTGTTTCCTCTGGCAAGGCACACCTGGGGTG
TGGCGGCGTTCGGAGGGGAGCAACAGCAGCGGTGGAGTCACCACGACCCA
CCGTCTCTGTCGTCGACCCAGCTGTCAAACCGCCGAAGCCGAAACGCAGC
TGAGACACCACCACCACCACCACCACCACCACCGTCTCAAAACGAAAGGC
AAGGGGTTGAAAGCACCAGCCGGCGGCATCGTGCCGAGCGCGGCGACAGC
GCCGCCGGTGGCGTCACAATGGTGGCACAGGTTGTGTTGGATGGCCTTGC
CGAGGAAGCACCCCCTGAGATGCTGCAAGATGTTATGCTTGCCATCGTGT
TTCCTCTGGCAAGGCACACCTGGGGTGTGGCGGCGTTCGGAGGGGAGCAA
CAGCAGCGGTGGAGTCACCACGACCCACCGTCTCTGTCGTCGACCCAGCT
GTCAAACCGCCGAAGCCGAAACGCAGCTGAGACACCACCACCACCACCAC
CACCACCACCGTCTCAAAACGAAAGGCAAGGGGTTGAAAGCACCAGCCGG
CGGCATCGTGCCGAGCGCGGCGACAGCGCCGCCGGTGGCGTCACAATGGT
GGCAGAGGGCGAGGAAGGAGAGGATGGTTTCGAGATGGTCGAGGCCCCCG
AAAAAACGGGCCACTCTTCACACACCGATGCCGCTGCCTCAGCACTGACG
CTCAGTCGCGAGCCCTCGGAGGCAATGGGCGACGGGGAGGATGCAGAGGA
CGACAACGGCGGCGGCGACAACGACAGCGACAGCGACAGCGAGGTCGAGT
TGCAGCAGCTCTCGAGCCCGGCGCTCCTGGCCCTACTGTTGGTGCTCAAG
TCGTTCCTCAAGCACCTGTCTTCACTTCGGCGGGGGGAGAAATTTTGTAT
TGTCTGGAATGAGGAGGGCGAGGAAGGAGAGGATGGTTTCGAGATGGTCG
AGGCCCCCGAAAAAACGGGCCACTCTTCACACACCGATGCCGCTGCCTCA
GCACTGACGCTCAGTCGCGAGCCCTCGGAGGCAATGGGCGACGGGGAGGA
TGCAGAGGACGACAACGGCGGCGGCGACAACGACAGCGACAGCGACAGCG
AGGTCGAGTTGCAGCAGCTCTCGAGCCCGGCGCTCCTGGCCCTACTGTTG
GTGCTCAAGTCGTTCCTCAAGCACCTGTCTTCACTTCGGCGGGGGGAGAA
ATTTTGTATTGTCTGGAATGAGTTTCTGTGCTGCCTGGAGATCCTGCTTG
GCACGGTGGGGACCGCGCCTCCGACGCTGGTGGATGGCGCGGCGGCCGGC
CTTGGCGCGGTGCTTGGGGAGATGCACAGAGAAGGACTCTTTGCCGCTGC
TTCCTCTGCCTTTCTGTGCTGCCTGGAGATCCTGCTTGGCACGGTGGGGA
CCGCGCCTCCGACGCTGGTGGATGGCGCGGCGGCCGGCCTTGGCGCGGTG
CTTGGGGAGATGCACAGAGAAGGACTCTTTGCCGCTGCTTCCTCTGCC
back to top