mRNA_L-elsbetiae_contig9027.18049.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9027.18049.1
Unique NamemRNA_L-elsbetiae_contig9027.18049.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9027.18049.1 vs. uniprot
Match: D7G372_ECTSI (Sodium/hydrogen exchanger family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G372_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 5.840e-18
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 2 
Query:    2 VVDDNLDTDYGNENYAALDNNTVHMPITGVIPAAGGG-AVKGKKAGFRGLVSQ-MSGLGKSSTSLAGNNSNGDIAGSYQQQQQV 247
            VVDDNLDTDYGNENY ALDN    MP +G++ A  GG + KGK+ G RGLVSQ MSGLGKS TSLA ++SN D+ GS+Q++ + 
Sbjct:  510 VVDDNLDTDYGNENYHALDNTVHIMPSSGIVSAPSGGESGKGKRGGIRGLVSQKMSGLGKS-TSLARSSSNSDLGGSHQRRSKT 592
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BLAST of mRNA_L-elsbetiae_contig9027.18049.1 vs. uniprot
Match: A0A6H5L0H9_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 4.800e-17
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 2 
Query:    2 VVDDNLDTDYGNENYAALDNNTVHMPITGVIPAAGGG-AVKGKKAGFRGLVSQ-MSGLGKSSTSLAGNNSNGDIAGSYQQQQQV 247
            VVDDNLDTDYGNENY ALDN    MP +G++ AA GG + KGK+ G RGLVSQ MSGLGKS TSLA ++SN ++ G++ ++ + 
Sbjct:  603 VVDDNLDTDYGNENYHALDNTVHIMPSSGIVSAASGGESGKGKRGGIRGLVSQKMSGLGKS-TSLARSSSNNELGGAHHRRSKT 685
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9027.18049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G372_ECTSI5.840e-1861.90Sodium/hydrogen exchanger family n=1 Tax=Ectocarpu... [more]
A0A6H5L0H9_9PHAE4.800e-1759.52Na_H_Exchanger domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9027contigL-elsbetiae_contig9027:5030..7776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size458
Cds size456
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9027.18049.1prot_L-elsbetiae_contig9027.18049.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9027 5032..7776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.4073615-CDS-L-elsbetiae_contig9027:5031..51391622816978.4073615-CDS-L-elsbetiae_contig9027:5031..5139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 5032..5139 -
1691683956.501528-CDS-L-elsbetiae_contig9027:5031..51391691683956.501528-CDS-L-elsbetiae_contig9027:5031..5139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 5032..5139 -
1622816978.4177318-CDS-L-elsbetiae_contig9027:5925..60241622816978.4177318-CDS-L-elsbetiae_contig9027:5925..6024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 5926..6024 -
1691683956.5119927-CDS-L-elsbetiae_contig9027:5925..60241691683956.5119927-CDS-L-elsbetiae_contig9027:5925..6024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 5926..6024 -
1622816978.4282238-CDS-L-elsbetiae_contig9027:7122..72181622816978.4282238-CDS-L-elsbetiae_contig9027:7122..7218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 7123..7218 -
1691683956.522533-CDS-L-elsbetiae_contig9027:7122..72181691683956.522533-CDS-L-elsbetiae_contig9027:7122..7218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 7123..7218 -
1622816978.439173-CDS-L-elsbetiae_contig9027:7623..77761622816978.439173-CDS-L-elsbetiae_contig9027:7623..7776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 7624..7776 -
1691683956.5374632-CDS-L-elsbetiae_contig9027:7623..77761691683956.5374632-CDS-L-elsbetiae_contig9027:7623..7776Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9027 7624..7776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9027.18049.1

>prot_L-elsbetiae_contig9027.18049.1 ID=prot_L-elsbetiae_contig9027.18049.1|Name=mRNA_L-elsbetiae_contig9027.18049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
GCGRQPGHRLRQRELRRVGQQYRAHAHHGGDSCSRRGRREGEESGVPWTS
QPNERARQVEHLPRGQQQQRRHRGELPTAAAGDAANHSRRTSGVGGRVML
DDGDGTKSYITPALARGTSHGALSSLDDHQAIVRPPLGQSASQHGGKRLL
GH
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mRNA from alignment at L-elsbetiae_contig9027:5030..7776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9027.18049.1 ID=mRNA_L-elsbetiae_contig9027.18049.1|Name=mRNA_L-elsbetiae_contig9027.18049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2747bp|location=Sequence derived from alignment at L-elsbetiae_contig9027:5030..7776- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGTGGACGACAACCTGGACACCGACTACGGCAACGAGAACTACGCCG
CGTTGGACAACAATACCGTGCACATGCCCATCACGGGGGTGATTCCTGCA
GCCGGCGGGGGCGCCGTGAAGGGGAAGAAAGCGGGGTTCCGTGGACTAGT
CAGGTATGAAGGGGAGAGAGGGCGCCGAGAAGGGGAGAGGGAACAGGTGC
TCCGTGATATCATCGCCGGGCATTTCCCCCCCCCTCCCCATTATTGGCTT
ATTTGTCGTCTGCCCCACTGGCCCCCATCGTCCACTACGGCTAGCTAGAC
GGCCCAACCGGGGTCACACGATGTATGTACGTACATTTATACGTTTAGCG
ATAATGTTGTTCTCGGTGATGATGTCATCGGGGGATGCCGTTGTGTGCCA
GGGAGAAGGGGTGTCTCTCCCACCTTTGTCCGTTTGTTGGGCCCCTTCGC
TTCCCGTCCGCCGACGTTTCGTTTTTTCACGACCACCCTTCGTGTCCGTC
CGTCTCCGTGTTGGTCCTCTTTGTCGTCCTCACGGCGCCGTCGTGACGGC
ATCGTCAGCCAAATGAGCGGGCTCGGCAAGTCGAGCACCTCCCTCGCGGG
CAACAACAGCAACGGCGACATCGCGGGGAGTTACCAACAGCAGCAGCAGG
TGATGCATAATCGTCTTCCCTTTTTGACTTGATTACAGACTGGGTTTTTC
GTTTTCGTTTTTTCGTCGCTCTTACCATGCTTGTTAAAATATTTTTATAA
TTTTTTTACGACGATTCCCATTACGCGCTTGATCGCGTCCACACGCGAGA
AGCAACCTTCGTTTGCCACTTTCCTCAATCCGTTCGAGGCGGTTTTTACT
CTCACTTCCGTGCGGGGGGGTGAGGGAATGGGCGCTGGGTACGGTATTTA
TGCATGGCTGGCTCGAAGTGCGTCCCCCCCTCCCCCCAATGTGTTTGTCC
ACGGCAGCCAATCAGCAGCAAGGCCGGTATTGCGGGGAGTTTGGGAAGAG
CCGCCGATCTATGCAAACGCGAGGAAAATACGATAAGACACCCCCTGGAC
CGATTTTCAAAGCTCAAGTGCTCCACAGCAAGCGCAGCGTCAGTCCCGAA
AAGGGCGGCGTTGGAAAGATCTCGTCGAGAGCTTTCCGAAAATGTGGCGT
TTGTGGTTAGAATCGTATTCGTTGCGGAGTAACCAAGCCTTCAATATCGG
TCCAGGGGGTGTCTTATCTATGCAAACGCGAGGAAAATACGACCAGGCAG
AGCCGTATCCCCGGCCGAAAAGCCGTGTTGATGCGCAGGGCATCGCTGTC
GTTGTGGGGACAGCACCGGGTGTCTTCGTGTGGGCCCAGTACGGCCTAGA
TAGGCAGGATCAGGGCTTTGTCTTCAGCTTTTAACACATGGGGTAAAATG
TGTCTTCATAGGGATCGGGAAAGGGGGTCGGGGTTTGGGGTTTGGGTTAG
GGCTACGGAACCCCTGTCTCTTATTTATTATTTCCTAGTGGGTCGGGGTT
TGGAGTACCGGTTAGGGTTACTGAACCCCTTTCTATCTGTAAACGGTCAA
AATTACATTCGATGCGCAGCAGCAGATGCCTTGTACGCTATCTGTAGAGC
AGTCCAAATTACATTGGATGCGCAGCAGCCCATGTCCTGTAGGTACATAT
GTTACGCTATCTGTAAAACAGTCCGAATTACATTCGAAGTAACCCTAACG
CTATCTGCTCACCTCCGTGCCGTTGCTGGTGTGCGTCTGCTCGGTCCCCA
AGGCCGCCAATCACTCGCGCAGGACTAGCGGGGTCGGGGGACGCGTGATG
CTCGATGACGGGGACGGAACAAAGAGCTACATTACCCCAGCCCTCGCAAG
GGTGAGTCGGTAGTCTACATGTTTATGTGTATGTTGTCTTCACATTAAAA
ACCGTTCCGATCTCTCCATCCAGTACCTCTCAATGTCCGTACTACTCCAA
CACTTAATGCGGTCAATTCCCGTGGTCACAGGCTAACTTATACCCAAGAA
AAGGTACACGAAAAATGAAATGGACCCGAAGGGCCAGCAAAGCAACAATA
AGTCTACGCAGGGTTTTGGTGTTGAGCTAACATGTGAAATAAAGTATGGA
GATGTGAGATAAAGGTTAGGGTTAGGGTTAGGGTTAGGGGTTAGGTTTAT
TCTCCTAGATAAAACATAGTTTCCGGCGTAGGTGGTCTGGGTGAGTGAGA
GCTGCCTTGTGGTAGAGGCCAGGACCGACTGTGCGTTACAATAGTTACCC
CGAAGATTAGTTACCCCGAAGATGATGATGCGAAAAAGAGAGCGCGAGCG
TGGTGTTGTCCCGAGCTGTGAGAGAGTCTCTCCCCGCGAGAGCGACGGAG
TTGTTTTCGGCGGAGGGGAGGTCCGGGCGACGACGTCGTACATAGGTGGC
CGTAACATTTCCCGTCGTTGCCACTGCTCTGTACGTACCAGAGAGCCAGC
CACGGGGCTCCGCACCCCCTTTGAATACCACCAACACCACATGTCCCTCG
ACTCTGCGATTGATTGTCTATCGACTGAACCCCCACCCCGTGCGCGCGTT
CCAAATATTTTGAAAGAGAAACAGTTACTTGTAATCAAAAATGGAACCTA
ACCCACACACATATTCCCGTCACAACCCCCCCGCCAGGGAACCAGCCACG
GGGCTCTGTCCTCCCTGGACGACCACCAGGCGATCGTCCGCCCTCCCTTG
GGACAGAGCGCCTCCCAGCACGGAGGCAAGAGGCTTCTCGGGCACGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9027:5030..7776-

>mRNA_L-elsbetiae_contig9027.18049.1 ID=mRNA_L-elsbetiae_contig9027.18049.1|Name=mRNA_L-elsbetiae_contig9027.18049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig9027:5030..7776- (Laminarionema elsbetiae ELsaHSoW15)
GGTTGTGGACGACAACCTGGACACCGACTACGGCAACGAGAACTACGCCG
CGTTGGACAACAATACCGTGCACATGCCCATCACGGGGGTGATTCCTGCA
GCCGGCGGGGGCGCCGTGAAGGGGAAGAAAGCGGGGTTCCGTGGACTAGT
CAGGGTTGTGGACGACAACCTGGACACCGACTACGGCAACGAGAACTACG
CCGCGTTGGACAACAATACCGTGCACATGCCCATCACGGGGGTGATTCCT
GCAGCCGGCGGGGGCGCCGTGAAGGGGAAGAAAGCGGGGTTCCGTGGACT
AGTCAGCCAAATGAGCGGGCTCGGCAAGTCGAGCACCTCCCTCGCGGGCA
ACAACAGCAACGGCGACATCGCGGGGAGTTACCAACAGCAGCAGCAGGTG
ATCCAAATGAGCGGGCTCGGCAAGTCGAGCACCTCCCTCGCGGGCAACAA
CAGCAACGGCGACATCGCGGGGAGTTACCAACAGCAGCAGCAGGTGATGC
CGCCAATCACTCGCGCAGGACTAGCGGGGTCGGGGGACGCGTGATGCTCG
ATGACGGGGACGGAACAAAGAGCTACATTACCCCAGCCCTCGCAAGGGCC
GCCAATCACTCGCGCAGGACTAGCGGGGTCGGGGGACGCGTGATGCTCGA
TGACGGGGACGGAACAAAGAGCTACATTACCCCAGCCCTCGCAAGGGGAA
CCAGCCACGGGGCTCTGTCCTCCCTGGACGACCACCAGGCGATCGTCCGC
CCTCCCTTGGGACAGAGCGCCTCCCAGCACGGAGGCAAGAGGCTTCTCGG
GCACGGAACCAGCCACGGGGCTCTGTCCTCCCTGGACGACCACCAGGCGA
TCGTCCGCCCTCCCTTGGGACAGAGCGCCTCCCAGCACGGAGGCAAGAGG
CTTCTCGGGCAC
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