mRNA_L-elsbetiae_contig9023.18043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9023.18043.1
Unique NamemRNA_L-elsbetiae_contig9023.18043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: D7FKX2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX2_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 6.100e-78
Identity = 147/185 (79.46%), Postives = 155/185 (83.78%), Query Frame = 2 
Query:    2 GSLASGTQLFKLVETDLMSKELTRYGPSDAEHLGLHSIQDVLSDIAAATLAPREPPAPIATAIASSVEVKVASALASVP--EEPAAAPAVREEEVLAAWGLGPVVSDASEVE-IQAPGAGEECNCEDVEEEG--VSNEKMAIKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            GSL +GTQLFKLVETDLMSKELTRYGP+DAEHLGLHSIQDVLSDIAAATL P +  AP  TA+A S EV      ASVP  EEPAAAPAVREEEVLAAWGLGPVV+D SEVE IQAP  GE      V EEG  VSNEK+AIKRTYQPSTLKRKRKHGFLYRAKTRLG+KI+RRRQDKGRWRLGI
Sbjct:   59 GSLGAGTQLFKLVETDLMSKELTRYGPADAEHLGLHSIQDVLSDIAAATLTPHKLAAPAVTAVAPSAEV------ASVPATEEPAAAPAVREEEVLAAWGLGPVVTDGSEVEGIQAPPVGE------VGEEGGEVSNEKVAIKRTYQPSTLKRKRKHGFLYRAKTRLGKKILRRRQDKGRWRLGI 231
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: Q013P8_OSTTA (Ribosomal protein L34, conserved site n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q013P8_OSTTA)

HSP 1 Score: 63.2 bits (152), Expect = 2.620e-9
Identity = 40/72 (55.56%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  323 EVEIQAPGAGEECNCEDVEEEGVSNE-KMAIKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRL 535
            EV I+APGA  E    ++EEEGV     +A KRTYQPS L RKR+HGF  R +T  G+KI+ RR+ KGR RL
Sbjct:    2 EVAIEAPGASGEV---EIEEEGVGEAMSLATKRTYQPSNLVRKRRHGFRTRLRTADGRKILSRRRRKGRRRL 70
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: RL34_THEAB (50S ribosomal protein L34 n=7 Tax=Thermotogales TaxID=2419 RepID=RL34_THEAB)

HSP 1 Score: 58.9 bits (141), Expect = 4.350e-8
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 2 
Query:  410 IKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            +KRTYQPS +KRKR HGFL R KT  G+K+++ R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKRKRTHGFLARKKTAGGRKVLKNRRRKGRWRLAV 44
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: A0A7V3ZUN1_9BACT (50S ribosomal protein L34 n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7V3ZUN1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 4.450e-8
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 2 
Query:  413 KRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            KRTYQPS +KRKR HGFL R +T  G+K+++RR+ KGRWRL +
Sbjct:    3 KRTYQPSRIKRKRTHGFLVRMRTPGGRKVLKRRRQKGRWRLTV 45
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: A0A2N7Q8D5_9BACT (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=A0A2N7Q8D5_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 5.970e-8
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 2 
Query:  410 IKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            +KRTYQPS +K KRKHGF  R KTR G++I++ R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKMKRKHGFRARMKTRSGRRILKNRRKKGRWRLTV 44
[Close]
BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: A0A7S3NIP4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIP4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.180e-8
Identity = 28/45 (62.22%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:  401 KMAIKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRL 535
            K AIKRT+QPS ++RKRKHGFL R  ++ G+KI+ RR++KGRWR+
Sbjct:  113 KQAIKRTFQPSIIRRKRKHGFLSRINSKKGRKIINRRKNKGRWRI 157
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: A0A836CKK1_9STRA (Ribosomal protein L34-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKK1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.680e-8
Identity = 56/161 (34.78%), Postives = 81/161 (50.31%), Query Frame = 2 
Query:   53 MSKELTRYGPSDAEHLGLHSIQDVLSDIAAATLAPREPPAPIATAIASSVEVKVASALASVPEEPAAAPAVREEEVLAAWGLGPVVSDASEVEIQAPGAGEECNCEDVEEEGVSNEKMAIKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRL 535
            M +++  +  ++A  LGL SI D+L+D    TLA                     +A A    E    PA  E EV     + P  S A  VE Q  G  E+     ++E  +    +A+KRT+QP+TL+RKRK GFL R   + G+KI++RR++KGR RL
Sbjct:    1 MQEQIRNFVTAEARGLGLLSISDILADFDRITLAD----------FRRGEYGSARAASADAAHEVTLPPAAHEVEVEV---VAPAASAA--VEQQRVGVPEDAGGA-IQEPEMKPAVLAVKRTFQPNTLRRKRKLGFLARVGDKNGRKILQRRRNKGRTRL 145
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BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: F8C4M3_THEGP (50S ribosomal protein L34 n=5 Tax=cellular organisms TaxID=131567 RepID=F8C4M3_THEGP)

HSP 1 Score: 58.2 bits (139), Expect = 8.190e-8
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 2 
Query:  410 IKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            +KRTYQPS +K KR+HGF  R KTR G++I+R R+ KGRWRL +
Sbjct:    1 MKRTYQPSRIKMKRRHGFRARMKTRSGRRILRNRRRKGRWRLTV 44
[Close]
BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: A0A7V0Z319_9DELT (50S ribosomal protein L34 n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V0Z319_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 8.190e-8
Identity = 27/44 (61.36%), Postives = 37/44 (84.09%), Query Frame = 2 
Query:  410 IKRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            +KRTYQPST++RKR HGFL R +T+ GQK+++RR+ KGR RL +
Sbjct:    1 MKRTYQPSTIRRKRTHGFLKRMETKAGQKVLKRRRAKGRKRLTV 44
[Close]
BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Match: A0A2N7PKN3_9BACT (50S ribosomal protein L34 n=5 Tax=Thermodesulfobacteriaceae TaxID=188711 RepID=A0A2N7PKN3_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 8.370e-8
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:  413 KRTYQPSTLKRKRKHGFLYRAKTRLGQKIMRRRQDKGRWRLGI 541
            KRTYQPS LK KRKHGF  R KTR G++I++ R+ KGRWRL +
Sbjct:    3 KRTYQPSRLKMKRKHGFRARMKTRSGRRILKNRRRKGRWRLTV 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9023.18043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX2_ECTSI6.100e-7879.46Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
Q013P8_OSTTA2.620e-955.56Ribosomal protein L34, conserved site n=2 Tax=Ostr... [more]
RL34_THEAB4.350e-861.3650S ribosomal protein L34 n=7 Tax=Thermotogales Ta... [more]
A0A7V3ZUN1_9BACT4.450e-862.7950S ribosomal protein L34 n=1 Tax=candidate divisi... [more]
A0A2N7Q8D5_9BACT5.970e-861.3650S ribosomal protein L34 n=5 Tax=cellular organis... [more]
A0A7S3NIP4_9STRA7.180e-862.22Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A836CKK1_9STRA7.680e-834.78Ribosomal protein L34-domain-containing protein n=... [more]
F8C4M3_THEGP8.190e-861.3650S ribosomal protein L34 n=5 Tax=cellular organis... [more]
A0A7V0Z319_9DELT8.190e-861.3650S ribosomal protein L34 n=1 Tax=Deltaproteobacte... [more]
A0A2N7PKN3_9BACT8.370e-865.1250S ribosomal protein L34 n=5 Tax=Thermodesulfobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9023contigL-elsbetiae_contig9023:526..1560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.0
Seed ortholog evalue3e-07
Seed eggNOG ortholog70448.Q013P8
KEGG koko:K02914
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribosomal protein L34
EggNOG OGs2E5A0@1,2SC40@2759,34NXH@3041,37VZM@33090
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Ec32 ortholog descriptionRibosomal protein L34
Ec32 orthologEc-17_001690.1
Exons1
Model size1035
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9023.18043.1prot_L-elsbetiae_contig9023.18043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9023 578..1069 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.0278711-UTR-L-elsbetiae_contig9023:525..5771622816978.0278711-UTR-L-elsbetiae_contig9023:525..577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9023 526..577 +
1691683956.1957326-UTR-L-elsbetiae_contig9023:525..5771691683956.1957326-UTR-L-elsbetiae_contig9023:525..577Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9023 526..577 +
1622816978.0555618-UTR-L-elsbetiae_contig9023:1069..15601622816978.0555618-UTR-L-elsbetiae_contig9023:1069..1560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9023 1070..1560 +
1691683956.223976-UTR-L-elsbetiae_contig9023:1069..15601691683956.223976-UTR-L-elsbetiae_contig9023:1069..1560Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig9023 1070..1560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816978.041186-CDS-L-elsbetiae_contig9023:577..10691622816978.041186-CDS-L-elsbetiae_contig9023:577..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 578..1069 +
1691683956.2125084-CDS-L-elsbetiae_contig9023:577..10691691683956.2125084-CDS-L-elsbetiae_contig9023:577..1069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9023 578..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9023.18043.1

>prot_L-elsbetiae_contig9023.18043.1 ID=prot_L-elsbetiae_contig9023.18043.1|Name=mRNA_L-elsbetiae_contig9023.18043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp
MSKELTRYGPSDAEHLGLHSIQDVLSDIAAATLAPREPPAPIATAIASSV
EVKVASALASVPEEPAAAPAVREEEVLAAWGLGPVVSDASEVEIQAPGAG
EECNCEDVEEEGVSNEKMAIKRTYQPSTLKRKRKHGFLYRAKTRLGQKIM
RRRQDKGRWRLGI*
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mRNA from alignment at L-elsbetiae_contig9023:526..1560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9023.18043.1 ID=mRNA_L-elsbetiae_contig9023.18043.1|Name=mRNA_L-elsbetiae_contig9023.18043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1035bp|location=Sequence derived from alignment at L-elsbetiae_contig9023:526..1560+ (Laminarionema elsbetiae ELsaHSoW15)
AGGGTCGTTGGCGTCAGGCACGCAACTGTTCAAGCTGGTGGAGACGGATC
TCATGTCGAAAGAGCTGACACGCTACGGCCCCTCCGACGCCGAGCACTTG
GGTCTCCATTCTATTCAGGACGTGCTGTCGGACATTGCCGCCGCCACTCT
CGCTCCTCGGGAGCCCCCTGCACCCATCGCCACTGCGATTGCCTCATCCG
TGGAGGTGAAGGTGGCTTCTGCGTTGGCTTCCGTACCAGAGGAGCCGGCA
GCAGCGCCAGCCGTGCGAGAGGAAGAAGTGCTCGCCGCATGGGGTTTGGG
GCCGGTTGTGTCGGATGCTTCCGAGGTCGAGATACAGGCGCCCGGCGCCG
GAGAGGAGTGTAACTGTGAGGACGTGGAAGAAGAGGGGGTTTCTAACGAG
AAGATGGCGATAAAGCGCACCTACCAGCCGAGCACGCTCAAGCGAAAGAG
GAAGCACGGCTTCCTGTACCGCGCCAAGACTCGCCTCGGCCAAAAAATCA
TGCGGAGGCGTCAGGACAAGGGCCGCTGGAGGCTCGGCATCTAGACGTCT
CCCACCTCTCACACCGTCCGGTAGTCTCGGATTGACGGCAGGCAGGGTTG
ACGGCCGTTGTATATATGGCAGGGAGTTGATTCAGAGAGTTGACACGGAC
TTTTTTGCCGGTCGTGACGAATGGCGTGGGGGCACTGAGAGTTCCTCTAC
TGGCCTGCCGCGACATTTTAAAAGGCGTGCTTTTGGCCAGGTTGCGAAAA
GAACGAGAGGTGAAGCGTGGCTCGCGCTTTGCACAGTCCCGAGAGATGAT
CTGCCTGGCGCGTACCCTGTGAAGGTACTCCACTTGCTTCCGCTGTTACT
GAAGCGACCCTGTCTCCTGATGATGAAGCATCGTACTCACCGTATGCCGT
ATGCATAGAATTAGTCTAGTTTTTCACTATACAAATGTTTTCATACAGCC
TTACACGTGAGATGGACGTGCGTACTATTGAGGAGCGAGTTGGCTTCTAT
CAAGTCTCCAGTCGTGCCATTTTGGCGACTTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9023:526..1560+

>mRNA_L-elsbetiae_contig9023.18043.1 ID=mRNA_L-elsbetiae_contig9023.18043.1|Name=mRNA_L-elsbetiae_contig9023.18043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig9023:526..1560+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAAAGAGCTGACACGCTACGGCCCCTCCGACGCCGAGCACTTGGG
TCTCCATTCTATTCAGGACGTGCTGTCGGACATTGCCGCCGCCACTCTCG
CTCCTCGGGAGCCCCCTGCACCCATCGCCACTGCGATTGCCTCATCCGTG
GAGGTGAAGGTGGCTTCTGCGTTGGCTTCCGTACCAGAGGAGCCGGCAGC
AGCGCCAGCCGTGCGAGAGGAAGAAGTGCTCGCCGCATGGGGTTTGGGGC
CGGTTGTGTCGGATGCTTCCGAGGTCGAGATACAGGCGCCCGGCGCCGGA
GAGGAGTGTAACTGTGAGGACGTGGAAGAAGAGGGGGTTTCTAACGAGAA
GATGGCGATAAAGCGCACCTACCAGCCGAGCACGCTCAAGCGAAAGAGGA
AGCACGGCTTCCTGTACCGCGCCAAGACTCGCCTCGGCCAAAAAATCATG
CGGAGGCGTCAGGACAAGGGCCGCTGGAGGCTCGGCATCTAGATGTCGAA
AGAGCTGACACGCTACGGCCCCTCCGACGCCGAGCACTTGGGTCTCCATT
CTATTCAGGACGTGCTGTCGGACATTGCCGCCGCCACTCTCGCTCCTCGG
GAGCCCCCTGCACCCATCGCCACTGCGATTGCCTCATCCGTGGAGGTGAA
GGTGGCTTCTGCGTTGGCTTCCGTACCAGAGGAGCCGGCAGCAGCGCCAG
CCGTGCGAGAGGAAGAAGTGCTCGCCGCATGGGGTTTGGGGCCGGTTGTG
TCGGATGCTTCCGAGGTCGAGATACAGGCGCCCGGCGCCGGAGAGGAGTG
TAACTGTGAGGACGTGGAAGAAGAGGGGGTTTCTAACGAGAAGATGGCGA
TAAAGCGCACCTACCAGCCGAGCACGCTCAAGCGAAAGAGGAAGCACGGC
TTCCTGTACCGCGCCAAGACTCGCCTCGGCCAAAAAATCATGCGGAGGCG
TCAGGACAAGGGCCGCTGGAGGCTCGGCATCTAG
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