mRNA_L-elsbetiae_contig9021.18042.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 120 bits (301), Expect = 5.570e-30 Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 3 Query: 213 MTSGGTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQLWA 599 M + G +R DAF++AL+QACEGGEKRW TST ELQ SL++CRACR P LH+RV TP +LW +P +V P S K+R+ +RVPV+RA+ LTW ++ L+Q AAI+LW+ Sbjct: 1 MPTEGYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLW---SPPTVQA------------LPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWS 114
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.320e-29 Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 3 Query: 231 SRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQLW 596 +RC DAF +AL+QACEGGEKRW STLELQ TSL+LCRACR ILH+ V D+TPR+LW S R P S + I++RVPV+RA+ LTW L ++AL++ AAI+LW Sbjct: 9 TRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSS---------------RTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELW 115
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 113 bits (283), Expect = 2.020e-24 Identity = 72/190 (37.89%), Postives = 92/190 (48.42%), Query Frame = 3 Query: 213 MTSGGTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQL------------------------------------------WAGHLQMISFGDRFNQCILGV 656 MT+ G S+C DAF VALNQAC+G EKRW STLELQ SLE+C ACR V LH+RV +TP +LW P + + N S K+ I++RVPV++A LTW LP+ L Q +A ++ W LQ +SFG FNQ I+GV Sbjct: 1 MTTKGNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWF--------PSQNHT-------TTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIVGV 175
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 103 bits (258), Expect = 1.020e-21 Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 3 Query: 225 GTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQL 593 G S C AF VALNQ C G EKRW STLELQ SLE C ACR VP LH+RV +TPR+LW +PC K + + +SR + ++ RVP ++A LTW L ++ L+Q++A++L Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLW---SPC-----KSHATTKKRSR-------EACVSNRVPAVQASGLTWALDMEVLLQTSAVEL 120
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.190e-21 Identity = 57/128 (44.53%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 213 MTSGGTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQLW 596 MTS RC DAF VAL+Q EGGEKRW TSTL+LQ SLE C ACR P+LH+ V ETP TLW + G + +TRVP ++AV LTW P ++ + SA+ +LW Sbjct: 1 MTSEAQRRCLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLW----------------------SLGQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELW 106
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 4.520e-20 Identity = 56/131 (42.75%), Postives = 70/131 (53.44%), Query Frame = 3 Query: 198 IQQLTMTSGGTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQ 590 I + T GG S D VALNQAC+G EKRW STLELQ SLELC ACR +LH+ V ++TP TLW S R P S ++ + RVP ++A+ TW LP+ L Q AA + Sbjct: 77 IVAMANTEGGGS-SLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSS---------------RTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAE 191
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 1.210e-18 Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 3 Query: 195 QIQQLTMTSGGTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLW 407 Q++Q+T S +C DAF VALNQ C+G EKRW STLELQ SLE C ACR VP LH+RV TPR+LW Sbjct: 31 QVKQMTRRS----KCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLW 97
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 9.070e-18 Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 3 Query: 225 GTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVL 527 G ++C DAF VAL+QACEGG KR TSTLEL SL++CRA R LH+RV +TPR+ W P K +++R P GS KIR+++RVPV+ Sbjct: 18 GPTQCFDAFVVALSQACEGGNKRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFW--------SPPK--VQLR-----PDEGSSKIRLSSRVPVV 103
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 2.110e-12 Identity = 48/126 (38.10%), Postives = 58/126 (46.03%), Query Frame = 3 Query: 225 GTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPGNGSVKIRITTRVPVLRAVHLTWELPVKALMQSAAIQLWAG 602 G C DAF VALN+ C+GGE+RW STLELQ SLE C ACR VP H T L ++ R PV+RA LTW L + L+QS A++L G Sbjct: 15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSH---STSTVGRLVSGVS-------------------------------RAPVVRAYSLTWALSMDVLLQSCAMELQRG 106
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 1.080e-11 Identity = 61/171 (35.67%), Postives = 76/171 (44.44%), Query Frame = 3 Query: 225 GTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPILHLRVGDETPRTLWCSLNPCSVDPDKRNIEIRIKSRAPG---NG-----SVKIRITTRVPVLRAV----------------HLTWELPVKALM----QSAAIQLWAGHLQMISFGDRFNQCILG 653 G S C DAF VAL QA +G KRW STLELQ SLE C ACR +++ +TP +LW S KR+ E I SR P NG ++I + L V + W + LM +S W LQ +SFGD FNQ I+G Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLW-SPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPIIG 194 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9021.18042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9021.18042.1 >prot_L-elsbetiae_contig9021.18042.1 ID=prot_L-elsbetiae_contig9021.18042.1|Name=mRNA_L-elsbetiae_contig9021.18042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp MTSGGTSRCTDAFSVALNQACEGGEKRWCTSTLELQRTSLELCRACRGVPback to top mRNA from alignment at L-elsbetiae_contig9021:1174..4834+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9021.18042.1 ID=mRNA_L-elsbetiae_contig9021.18042.1|Name=mRNA_L-elsbetiae_contig9021.18042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3661bp|location=Sequence derived from alignment at L-elsbetiae_contig9021:1174..4834+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9021:1174..4834+ >mRNA_L-elsbetiae_contig9021.18042.1 ID=mRNA_L-elsbetiae_contig9021.18042.1|Name=mRNA_L-elsbetiae_contig9021.18042.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig9021:1174..4834+ (Laminarionema elsbetiae ELsaHSoW15)back to top |