mRNA_L-elsbetiae_contig902.18040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig902.18040.1
Unique NamemRNA_L-elsbetiae_contig902.18040.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.570e-40
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK
Sbjct:  198 MRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 272
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.060e-38
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYLTTVGNGE GVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMF+KRGNLLGAGIETYLLEK
Sbjct:  147 MRYLTTVGNGEGGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEK 221
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A7S3HSJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSJ7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.140e-29
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYLTTVGN    + +E GS+MD+VLQSNPILEAFGNART+RNDNSSRFGKFIEL FNKRG+L+G  I TYLLEK
Sbjct:   93 LRYLTTVGNSTGDMNVESGSVMDKVLQSNPILEAFGNARTLRNDNSSRFGKFIELSFNKRGHLIGGVIRTYLLEK 167
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A7S4DA52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA52_HETAK)

HSP 1 Score: 115 bits (289), Expect = 3.500e-28
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYLT VGN E    +  GSIMD+VLQSNPILEAFGNARTIRNDNSSRFGKFIEL F++RG+LLGA + TYLLEK
Sbjct:  205 MRYLTAVGNPEGITAVAAGSIMDKVLQSNPILEAFGNARTIRNDNSSRFGKFIELRFDRRGHLLGAALRTYLLEK 279
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A482SDW9_9ARCH (Myosin motor domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDW9_9ARCH)

HSP 1 Score: 112 bits (279), Expect = 3.860e-28
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYLT+VG+ +   E E+GS+MD+VLQSNPILEAFGNART+R+DNSSRFGKFIEL F+KRG+L+G  I TYLLEK
Sbjct:  137 LRYLTSVGSSQ-AEEKERGSVMDKVLQSNPILEAFGNARTLRSDNSSRFGKFIELQFSKRGHLIGGSIRTYLLEK 210
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A7S2Y0D6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0D6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.320e-27
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 FRYLTTVGN--GEDGVE-LEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYL  VGN  G  G+  + KGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIEL F++RG+L+GA I+TYLLEK
Sbjct:  200 MRYLIAVGNPEGTAGIAAVTKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELKFDRRGHLMGASIQTYLLEK 277
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A6H5LBZ3_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.290e-25
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:   55 GSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
            G   DRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK
Sbjct:  203 GREWDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 259
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: F0XZB9_AURAN (Myosin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZB9_AURAN)

HSP 1 Score: 105 bits (261), Expect = 2.140e-24
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             RYLT VG G DG       IM++VLQSNPILEAFGNART+RNDNSSRFGKFIEL F+ RG + GA ++TYLLEK
Sbjct:  104 MRYLTVVGKGGDG---SNAVIMEKVLQSNPILEAFGNARTVRNDNSSRFGKFIELKFDDRGAMRGAAVDTYLLEK 175
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: A0A1Z5KGH1_FISSO (Myosin V n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGH1_FISSO)

HSP 1 Score: 104 bits (260), Expect = 2.960e-24
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    7 YLTTVGNGEDGVELEKG-------SIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
            YLTT+G+G   V  E G       S+M RVLQSNP+LEAFGNART+RNDNSSRFGKFIEL F++ G+LLGA ++TYLLEK
Sbjct:  196 YLTTLGSGSGEVVKENGGDESGELSVMQRVLQSNPVLEAFGNARTLRNDNSSRFGKFIELGFSRAGHLLGAKVQTYLLEK 275
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BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Match: K3X6F0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6F0_GLOUD)

HSP 1 Score: 103 bits (256), Expect = 1.020e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEK 225
             +YL T+   + G E + G++M +VL SNPILE+FGNARTIRNDNSSRFGKFI++ F++RGNL+GA I+TYLLEK
Sbjct:  197 MQYLATISQAQKGSE-DDGNVMKQVLSSNPILESFGNARTIRNDNSSRFGKFIKMQFSERGNLIGASIQTYLLEK 270
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig902.18040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTS1_ECTSI2.570e-4098.67Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5KDB8_9PHAE1.060e-3896.00Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A7S3HSJ7_9STRA1.140e-2976.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S4DA52_HETAK3.500e-2876.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SDW9_9ARCH3.860e-2872.00Myosin motor domain-containing protein n=1 Tax=arc... [more]
A0A7S2Y0D6_9STRA2.320e-2775.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5LBZ3_9PHAE1.290e-2594.74Myosin motor domain-containing protein n=1 Tax=Ect... [more]
F0XZB9_AURAN2.140e-2469.33Myosin motor domain-containing protein (Fragment) ... [more]
A0A1Z5KGH1_FISSO2.960e-2466.25Myosin V n=2 Tax=Fistulifera solaris TaxID=1519565... [more]
K3X6F0_GLOUD1.020e-2364.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig902contigL-elsbetiae_contig902:23765..24028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1e-33
Seed eggNOG ortholog2880.D8LTS1
KEGG koko:K10357
Hectar predicted targeting categoryother localisation
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Exons1
Model size264
Cds size264
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816977.8690312-CDS-L-elsbetiae_contig902:23764..240281622816977.8690312-CDS-L-elsbetiae_contig902:23764..24028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig902 23765..24028 -
1691683956.1080737-CDS-L-elsbetiae_contig902:23764..240281691683956.1080737-CDS-L-elsbetiae_contig902:23764..24028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig902 23765..24028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig902.18040.1prot_L-elsbetiae_contig902.18040.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig902 23765..24028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig902.18040.1

>prot_L-elsbetiae_contig902.18040.1 ID=prot_L-elsbetiae_contig902.18040.1|Name=mRNA_L-elsbetiae_contig902.18040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
FRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFG
KFIELMFNKRGNLLGAGIETYLLEKASSGKGRDGGWG*
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mRNA from alignment at L-elsbetiae_contig902:23765..24028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig902.18040.1 ID=mRNA_L-elsbetiae_contig902.18040.1|Name=mRNA_L-elsbetiae_contig902.18040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=264bp|location=Sequence derived from alignment at L-elsbetiae_contig902:23765..24028- (Laminarionema elsbetiae ELsaHSoW15)
TTTAGGTACCTGACAACGGTGGGGAACGGGGAGGACGGCGTGGAGCTGGA
GAAGGGCTCCATCATGGACAGGGTGCTGCAGAGCAACCCCATCCTCGAGG
CCTTCGGGAACGCCCGAACAATCCGCAACGACAACTCCTCGCGGTTCGGG
AAGTTTATCGAGCTCATGTTCAACAAGCGGGGGAACTTATTGGGGGCGGG
GATCGAGACGTACCTACTCGAGAAGGCGAGCTCGGGGAAGGGAAGGGATG
GGGGGTGGGGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig902:23765..24028-

>mRNA_L-elsbetiae_contig902.18040.1 ID=mRNA_L-elsbetiae_contig902.18040.1|Name=mRNA_L-elsbetiae_contig902.18040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig902:23765..24028- (Laminarionema elsbetiae ELsaHSoW15)
TTTAGGTACCTGACAACGGTGGGGAACGGGGAGGACGGCGTGGAGCTGGA
GAAGGGCTCCATCATGGACAGGGTGCTGCAGAGCAACCCCATCCTCGAGG
CCTTCGGGAACGCCCGAACAATCCGCAACGACAACTCCTCGCGGTTCGGG
AAGTTTATCGAGCTCATGTTCAACAAGCGGGGGAACTTATTGGGGGCGGG
GATCGAGACGTACCTACTCGAGAAGGCGAGCTCGGGGAAGGGAAGGGATG
GGGGGTGGGGGTAGTTTAGGTACCTGACAACGGTGGGGAACGGGGAGGAC
GGCGTGGAGCTGGAGAAGGGCTCCATCATGGACAGGGTGCTGCAGAGCAA
CCCCATCCTCGAGGCCTTCGGGAACGCCCGAACAATCCGCAACGACAACT
CCTCGCGGTTCGGGAAGTTTATCGAGCTCATGTTCAACAAGCGGGGGAAC
TTATTGGGGGCGGGGATCGAGACGTACCTACTCGAGAAGGCGAGCTCGGG
GAAGGGAAGGGATGGGGGGTGGGGGTAG
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