mRNA_L-elsbetiae_contig9017.18038.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig9017.18038.1
Unique NamemRNA_L-elsbetiae_contig9017.18038.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig9017.18038.1 vs. uniprot
Match: D8LMN3_ECTSI (CNOT1_TTP_bind domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN3_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.210e-57
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:   19 STGWYEADALALVPLFAEHASSTGEMNFLNKTSGAMSLAADVAGIASSIGQEGSLAGFLRDLGHTCCSSTASLRQAIRESGVVVDERQVAQVMTMLANNYNSPKGQG-DDGELSSALTSSLF 381
            S+ W EADALAL PLFAEHASS GEMNFLNKT GAMSLAADVAGIAS IG+ GSLAGFLRDLGHTCCS+ A+LRQAIRESGVVVDERQVAQVMTMLANNYNSPKGQG DDGE+SSALTSSLF
Sbjct:  292 SSAWLEADALALAPLFAEHASSVGEMNFLNKTQGAMSLAADVAGIASGIGRGGSLAGFLRDLGHTCCSTPAALRQAIRESGVVVDERQVAQVMTMLANNYNSPKGQGGDDGEISSALTSSLF 413
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BLAST of mRNA_L-elsbetiae_contig9017.18038.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 1.860e-56
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:   19 STGWYEADALALVPLFAEHASSTGEMNFLNKTSGAMSLAADVAGIASSIGQEGSLAGFLRDLGHTCCSSTASLRQAIRESGVVVDERQVAQVMTMLANNYNSPKGQG-DDGELSSALTSSLF 381
            S+ W EADALAL PLFAEHASS GEMNFLNKT GAMSLAADVAGIAS IG+ GSLAGFLRDLGHTCCS+ A+LRQAIRESGV+VDERQVAQVMTMLANNYNSPKGQG DDG++SSALTSSLF
Sbjct:  320 SSAWLEADALALAPLFAEHASSVGEMNFLNKTQGAMSLAADVAGIASGIGRGGSLAGFLRDLGHTCCSTPAALRQAIRESGVMVDERQVAQVMTMLANNYNSPKGQGGDDGDISSALTSSLF 441
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9017.18038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMN3_ECTSI2.210e-5788.52CNOT1_TTP_bind domain-containing protein (Fragment... [more]
A0A6H5JXN6_9PHAE1.860e-5686.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig9017contigL-elsbetiae_contig9017:4942..6591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.4
Seed ortholog evalue6.4e-50
Seed eggNOG ortholog2880.D8LMN3
KEGG koko:K12604
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000289,GO:0000932,GO:0000956,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006351,GO:0006354,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0030014,GO:0030015,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032774,GO:0032947,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1990904,GO:2000112,GO:2000113
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
EggNOG OGsCOG5103@1,KOG1831@2759
COG Functional cat.DK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_003880.3
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816977.5503328-CDS-L-elsbetiae_contig9017:4941..51931622816977.5503328-CDS-L-elsbetiae_contig9017:4941..5193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9017 4942..5193 +
1691683955.8459332-CDS-L-elsbetiae_contig9017:4941..51931691683955.8459332-CDS-L-elsbetiae_contig9017:4941..5193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9017 4942..5193 +
1622816977.56211-CDS-L-elsbetiae_contig9017:6461..65901622816977.56211-CDS-L-elsbetiae_contig9017:6461..6590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9017 6462..6590 +
1691683955.8681054-CDS-L-elsbetiae_contig9017:6461..65901691683955.8681054-CDS-L-elsbetiae_contig9017:6461..6590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig9017 6462..6590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig9017.18038.1prot_L-elsbetiae_contig9017.18038.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig9017 4942..6590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig9017.18038.1

>prot_L-elsbetiae_contig9017.18038.1 ID=prot_L-elsbetiae_contig9017.18038.1|Name=mRNA_L-elsbetiae_contig9017.18038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
AAAAAPSTGWYEADALALVPLFAEHASSTGEMNFLNKTSGAMSLAADVAG
IASSIGQEGSLAGFLRDLGHTCCSSTASLRQAIRESGVVVDERQVAQVMT
MLANNYNSPKGQGDDGELSSALTSSLF
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mRNA from alignment at L-elsbetiae_contig9017:4942..6591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig9017.18038.1 ID=mRNA_L-elsbetiae_contig9017.18038.1|Name=mRNA_L-elsbetiae_contig9017.18038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig9017:4942..6591+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCAGCACCGTCTACTGGTTGGTACGAGGCGGACGCGCTCGC
GCTGGTTCCGCTGTTCGCGGAGCACGCGTCTTCCACGGGAGAGATGAACT
TCCTCAACAAGACGAGCGGGGCGATGTCCCTCGCGGCAGACGTCGCGGGC
ATCGCCAGCAGCATCGGGCAGGAGGGGAGCCTGGCAGGGTTCTTGAGGGA
TCTCGGCCACACCTGCTGCTCGAGTACGGCCTCGCTTCGGCAGGCCATCA
GGGTGAGTGATGAGAGTGACCTTGAATTAATCCAGAGAACGTTTTTAGTC
GGCAGGCAGGTAGGCAGGTGGGCCATCAGGGTGAGAGATGAGAGTGAGCT
TGAATTAATCCAAAAGAGGCGTTTTTAGTCGGCAGGTAGGCGGGCAGGCC
ATCAGGGTAAGAGATGAGAGTGAGCTTGAATTAATCCAGAGAGGCGTTTT
TAGTCGGCAGGTAGGCAAGTAGGCGGGCAGGACATCAGGGTGAGTGATGA
GTGAGGTTGAACGGATTGAGAGACTTTTCTAGTCGGCAGGCGGGTAGGCA
GGCGGGCAGGACATCAGGGTGAGGGATGAGAGTGAGCTCGAATGAACTCA
GAGAGGCGTTTTTAGTCGGCAGGCAGGCAGATGGGCAGGCCATCAGGGTG
AGTGATGAGGGGAGTTGAACGGATTTTGAGACTTTTTTCCCAGGAAAAGT
TTTTTTTTTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GCGGGGGGGCTGTGTCTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGAGGCCGGGGGTAGAGGACGGCAGGAGTTACGTTTACCAGGGGTG
TGGTGTGTTTTGTTTCCTCCTTGTTTGTTAGGGTGCTGTTCGTGGTTTGG
CCTGTTGGCCCCTCTTTTGGTCTTCGGGGACCCCGTGTTGTCATTGTGCT
TACAAGACATGCTCTCGTCTTTCGATGCCAGGGCCGGGCGGCGGAAAAAA
AGAAAAAAAAGAAAAACTCATTCCGTCGCAAATGTATTAGGTCCGACCCG
AGCCAGCGTAGCCCAGGTCCTAGGTGTAGGTAGGAGGAGGAGGAGGAAAC
CAAAGCGGCGAGCCTCTGGCGAATACACATCTTCTCCCCTCTCCTTCGTG
CGCGCTACTGCTGTGTATCGTCCTGGCATATTGCCGCTGTTTATCTCTGA
AGTGCGCGGGACACATGAAGCCAGCATAGCTATTAGTTGTTGTTTCTTCA
CATTAGCTCGTACAATCGAGATTGCTAATTCCAAAAAAAAACTAGCAACT
CACGGCCCTTGGCCACATAAGTTCTAGAGCCATCAGAAGATCGGAAGAAA
AGTGTCTTTCCTCCGCTGAACCTGAATCCGTTTCTCCCATCCGTCGGCGC
TCCTTCCTCCTTGATGTGTCTTGCTGTGCGTTCTCGGGGTTGGGCTATAT
GCATGCATCGATCGCTGCAGGAAAGCGGAGTCGTGGTCGATGAGCGCCAG
GTGGCGCAGGTGATGACGATGTTGGCCAACAACTACAACAGCCCGAAGGG
GCAGGGGGATGACGGGGAGCTCTCGTCGGCGCTCACCAGCAGTCTGTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig9017:4942..6591+

>mRNA_L-elsbetiae_contig9017.18038.1 ID=mRNA_L-elsbetiae_contig9017.18038.1|Name=mRNA_L-elsbetiae_contig9017.18038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig9017:4942..6591+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCGGCAGCACCGTCTACTGGTTGGTACGAGGCGGACGCGCTCGC
GCTGGTTCCGCTGTTCGCGGAGCACGCGTCTTCCACGGGAGAGATGAACT
TCCTCAACAAGACGAGCGGGGCGATGTCCCTCGCGGCAGACGTCGCGGGC
ATCGCCAGCAGCATCGGGCAGGAGGGGAGCCTGGCAGGGTTCTTGAGGGA
TCTCGGCCACACCTGCTGCTCGAGTACGGCCTCGCTTCGGCAGGCCATCA
GGGCGGCGGCGGCAGCACCGTCTACTGGTTGGTACGAGGCGGACGCGCTC
GCGCTGGTTCCGCTGTTCGCGGAGCACGCGTCTTCCACGGGAGAGATGAA
CTTCCTCAACAAGACGAGCGGGGCGATGTCCCTCGCGGCAGACGTCGCGG
GCATCGCCAGCAGCATCGGGCAGGAGGGGAGCCTGGCAGGGTTCTTGAGG
GATCTCGGCCACACCTGCTGCTCGAGTACGGCCTCGCTTCGGCAGGCCAT
CAGGGAAAGCGGAGTCGTGGTCGATGAGCGCCAGGTGGCGCAGGTGATGA
CGATGTTGGCCAACAACTACAACAGCCCGAAGGGGCAGGGGGATGACGGG
GAGCTCTCGTCGGCGCTCACCAGCAGTCTGTTCGAAAGCGGAGTCGTGGT
CGATGAGCGCCAGGTGGCGCAGGTGATGACGATGTTGGCCAACAACTACA
ACAGCCCGAAGGGGCAGGGGGATGACGGGGAGCTCTCGTCGGCGCTCACC
AGCAGTCTGTTC
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