mRNA_L-elsbetiae_contig901.18031.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig901.18031.1
Unique NamemRNA_L-elsbetiae_contig901.18031.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig901.18031.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig901contigL-elsbetiae_contig901:2227..5143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size513
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816977.0198007-CDS-L-elsbetiae_contig901:2227..25021622816977.0198007-CDS-L-elsbetiae_contig901:2227..2502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig901 2228..2502 -
1691683955.4441662-CDS-L-elsbetiae_contig901:2227..25021691683955.4441662-CDS-L-elsbetiae_contig901:2227..2502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig901 2228..2502 -
1622816977.0326567-CDS-L-elsbetiae_contig901:4908..51431622816977.0326567-CDS-L-elsbetiae_contig901:4908..5143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig901 4909..5143 -
1691683955.4609776-CDS-L-elsbetiae_contig901:4908..51431691683955.4609776-CDS-L-elsbetiae_contig901:4908..5143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig901 4909..5143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig901.18031.1prot_L-elsbetiae_contig901.18031.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig901 2228..5143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig901.18031.1

>prot_L-elsbetiae_contig901.18031.1 ID=prot_L-elsbetiae_contig901.18031.1|Name=mRNA_L-elsbetiae_contig901.18031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
QTEQGARERIPRGREGAESANVTERPAVVLALFGKLATPRRTGLDAPVFR
TFRRARWRARRDEGPLVAPAAKERMTDKGVRLRARVATLVLAKSGRHHRQ
QAESQPIKAGRHPSRSGCGLRPAVVATAAAATAAAAVTERGWGETKRRRP
RRCRRWPPPSLPLCPRRRTR
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mRNA from alignment at L-elsbetiae_contig901:2227..5143-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig901.18031.1 ID=mRNA_L-elsbetiae_contig901.18031.1|Name=mRNA_L-elsbetiae_contig901.18031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2917bp|location=Sequence derived from alignment at L-elsbetiae_contig901:2227..5143- (Laminarionema elsbetiae ELsaHSoW15)
CAAACCGAGCAGGGCGCCAGAGAGAGGATACCGAGAGGGAGGGAGGGAGC
CGAGTCTGCCAACGTCACAGAAAGACCGGCGGTCGTCCTCGCTCTCTTCG
GTAAGCTAGCAACGCCTAGGAGGACGGGCCTAGACGCGCCTGTTTTTCGT
ACATTTCGACGGGCCCGATGGAGAGCGAGGAGAGACGAAGGGCCGCTGGT
AGCGCCGGCAGCGAAGGAGCGGATGACAGACAAAGGTGTGAGACATAGCA
CGACTCTTCAGGCGTCGCGCCTTTCTCGTCGTGTGTAAATGTTAGCGGTG
CCCGGGGTAGCGAGCTAGATGTTGGTGCCGGTGCCGATACGGACGGTGTT
TTTTTGAAAGCCTCCACCCTCGTTTTTCGTCTCGTCACTGAAACCGGCTT
GTTTACGCACCTCTGTACATAACGCTTCGTGCGTGCATTAACCTGTTACA
TCCGACGGCGCACCGTTTTGATGGCGGCCGCAGCCCGTCCAAAGTTTAAC
CACGAGGAATCCCCCGGGCGTGCTCTCTGCCGTGGGGCGCTTGGCGTGTT
TGTTACGGTGAACGAGAGCAAGCTAAAACACATCCCGCTTGTATCGTCGA
TTTTCAAAAAAAAATGTGTGTCTGCATACAAGGTGTCCTACTCTGTACCT
CTGTCAAAACTGCATGCGGCCGTTTGTTCTGACGTTAACCCAGACGGCGA
CCTTTGACCGGGGTGCTGCGTGCTCGAGGTCTAAGCATGGGTGTTAAAGG
GGAGTACCTCTCTGGCTGAACCCGCCGGAACATATCTTCAAACATAAGCT
TCTCTGCGCATACATATTTACGGCTCGCTCTCTCACAAAGTTTCAACAAA
GTTTGAAAAGTGCAATAGGTATTTAGGAGACACCGCCGTTCAGCGTGAAG
GACAGGAGGGAGAGCAGAGGCCAACAGCTGCCGTTGCACACCTTTCCACC
CTGCTATTTTAGAATTGTTCGCGTTTAGTCGAGCCTGTAAGAGTGGGTAG
GACTTGCCTCAAGACGTCCGGGCACGGCAGCATGTCGTCAGTTGATTTGC
CAAACGCAAAAAGTTTTTTTTTAAATTCTTCCAGTTCTCCCCGCCAAGCC
GAGACCGTCTACATAGCACGAAGAGTGTTCATGCTGTGTCGTTTGGGCGC
GCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGCTGAGTGTGTGCTGGCCTGTTGGGCTGCCCGGGCTTGCTCC
TGGGCACCCGCACCCCCTGAAATCCACGGGAAAGGGAAATCCGCAAAATC
CGCACGAATCAGGGGAAATCCGAAACAAACGCGACGCTGCTGTTTCCCCG
CATCGAAAGGGAGCGAGCCAGCCAGCAGGCCAGGCGTTCGTGTTGCGATG
AATCGCCACGGCGTGCCCTACCGCTGAATCGAGCTCACCGGCCTTTGACC
GAGTCACACCGGCGAACGTTTCTTACCAGGTCCTTGCTTTTTTTTATCTA
TTAAATAGATATATTTTGGACAGACAGCAGGAGTGTACGGACAACGATTT
TTGGAATGGGGCAAATTTGAAAATGCCGGAACAAGCGCATGTTAAACACA
CAGCCGGTCTAGATACCAGACCTGTAGGGGGAGCGTTGCGCAAAAAGAAA
GCTGTTGGTTCGCTCCCCCAGCGGGTAGCGGGGCTGTTCTTTTCATACAC
ATCACACACGGAGTCTACCTCCAACTGCGAACTTTAAATCAGAATCAAAC
ACGCCCGCACTCTAAAACCAAGACAAAACAGGCCAGTTTGCGGACGTTCA
GTGTAAGGTTTGGGATTGGAGATTTTTCGTACTAAACAGCTCTGTGCGTA
GAAGACACCACGGAGAAGGGTGTGATGCATGCTGGCATGTGCAAATTTGC
TGCTGGGGCGGAGTTATCGACAACTGTAACAACAGTAGCTCCACAGAACC
CCGCAATCGGCCGACGACACAGCAAACATCTACTGCTGAGTTCGCCGCCA
CAGACCCCAACCTCCTGAATTGCGGGTCCACAGCGTAGCTCATACCACTA
GCTACTGCTGTAGACCCGTGGCCGTGGAGGTTGGGACCTGCAAGGGCGAG
AGCACAGCAGTGGATGTTTGCTGTCGTTGGCCCAGATTGCGGAGTTCTGC
AGGACTGCTGCGGTGCTCCATAACTCCACCCCAGCAGCAGGTCTGCACAT
ACCAGCACGCATCACACCCTTCTCCATGGTGTCCTCTACGCACAGAGCTG
TTTAGTACGAACAGCATCTGATCCCACACCTTATTAGAAGCTAGGCGGTT
TAACTTGGTTTTTGAATAGGCAGAGGGGGCCGGATTTTTTTGTCTTGGAT
TTTGTTAGGGCATGTATCCCAGCGTTGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCACCCCCCCTCCCCACCCCAATATTTATGGCCCCGCCCTTACC
GTTACAGCACCAAGCGGGGGGGGGNNNNNNNNNNGTTTTTTGAAAAGGAG
GGGGGGGCCGGATTTTTTTGTTTTGGATTTTGTGGGGGCATGTTTCCCCG
CGTTGCCCCCCCCCCCCCCCCCTAAATTACACAACGTACGGCCTTTCAAA
TCTAATTCTCGAGCCCTGGCTTCATACGTTCAACACAGCAGGGGTTCGGC
TTCGCGCAAGGGTAGCAACTCTGGTCCTGGCAAAAAGCGGCCGGCATCAC
CGGCAGCAGGCGGAAAGCCAGCCCATCAAGGCTGGTCGACATCCGTCGCG
GAGCGGTTGCGGGCTCCGCCCGGCAGTGGTGGCAACGGCGGCGGCGGCAA
CGGCAGCAGCGGCAGTAACGGAGCGCGGATGGGGCGAGACGAAGCGGAGG
CGGCCGCGGCGATGCAGGCGTTGGCCTCCTCCATCTCTTCCTCTCTGCCC
TCGAAGAAGAACTCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig901:2227..5143-

>mRNA_L-elsbetiae_contig901.18031.1 ID=mRNA_L-elsbetiae_contig901.18031.1|Name=mRNA_L-elsbetiae_contig901.18031.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig901:2227..5143- (Laminarionema elsbetiae ELsaHSoW15)
CAAACCGAGCAGGGCGCCAGAGAGAGGATACCGAGAGGGAGGGAGGGAGC
CGAGTCTGCCAACGTCACAGAAAGACCGGCGGTCGTCCTCGCTCTCTTCG
GTAAGCTAGCAACGCCTAGGAGGACGGGCCTAGACGCGCCTGTTTTTCGT
ACATTTCGACGGGCCCGATGGAGAGCGAGGAGAGACGAAGGGCCGCTGGT
AGCGCCGGCAGCGAAGGAGCGGATGACAGACAAAGCAAACCGAGCAGGGC
GCCAGAGAGAGGATACCGAGAGGGAGGGAGGGAGCCGAGTCTGCCAACGT
CACAGAAAGACCGGCGGTCGTCCTCGCTCTCTTCGGTAAGCTAGCAACGC
CTAGGAGGACGGGCCTAGACGCGCCTGTTTTTCGTACATTTCGACGGGCC
CGATGGAGAGCGAGGAGAGACGAAGGGCCGCTGGTAGCGCCGGCAGCGAA
GGAGCGGATGACAGACAAAGGGGTTCGGCTTCGCGCAAGGGTAGCAACTC
TGGTCCTGGCAAAAAGCGGCCGGCATCACCGGCAGCAGGCGGAAAGCCAG
CCCATCAAGGCTGGTCGACATCCGTCGCGGAGCGGTTGCGGGCTCCGCCC
GGCAGTGGTGGCAACGGCGGCGGCGGCAACGGCAGCAGCGGCAGTAACGG
AGCGCGGATGGGGCGAGACGAAGCGGAGGCGGCCGCGGCGATGCAGGCGT
TGGCCTCCTCCATCTCTTCCTCTCTGCCCTCGAAGAAGAACTCGGGGGTT
CGGCTTCGCGCAAGGGTAGCAACTCTGGTCCTGGCAAAAAGCGGCCGGCA
TCACCGGCAGCAGGCGGAAAGCCAGCCCATCAAGGCTGGTCGACATCCGT
CGCGGAGCGGTTGCGGGCTCCGCCCGGCAGTGGTGGCAACGGCGGCGGCG
GCAACGGCAGCAGCGGCAGTAACGGAGCGCGGATGGGGCGAGACGAAGCG
GAGGCGGCCGCGGCGATGCAGGCGTTGGCCTCCTCCATCTCTTCCTCTCT
GCCCTCGAAGAAGAACTCGG
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