mRNA_L-elsbetiae_contig9004.18028.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig9004.18028.1 vs. uniprot
Match: A0A6H5JMN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN8_9PHAE) HSP 1 Score: 426 bits (1094), Expect = 1.050e-147 Identity = 208/248 (83.87%), Postives = 226/248 (91.13%), Query Frame = 1 Query: 1 QTAIRGGGGEDGIRVLTREESEAAIVSYAASAKRHRPIESEYSEYIGMLQGMQSWGEALTKKRVGCKRMVLGNFRRGNLVCIAAAEVVWSTGYLSRDVRLSIPLLVVNPKYDMRKVGFETIKRMQKFGMQNALLLDLSALMEVPSLRVFCLESTQTLDEDPEGMFQDPLVQQYNSRVRRSCYVLDDIPKWADLGPYWYEGVLPRGVRFFFRKRFHAVNEFEVSITRPGAGLSTGSGTVGGARVIPMHE 744 QT RGGG EDGIR LTREESEAAI+S+A SAKRH +SEY ++I +LQGM+SWG+ LT+KRVGCKR+VLGNF+RGNLVCIAAA+VVWSTGYLSRDVRLS+ L+ VNPKYDMRKVGFETIKRM+ FGMQNALLLDLS LM VP LRVFCLESTQTLDEDPEG+FQDPLVQQYNSRVRRSCYVLDDIP WADLGPYWYEGVLPR VRFFFRKRFHAVNEFEV++ RPGAGLSTGSGTVGGARVI M E Sbjct: 86 QTTARGGG-EDGIRELTREESEAAILSFADSAKRHSRTQSEYDDHIELLQGMRSWGQPLTQKRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDE 332
BLAST of mRNA_L-elsbetiae_contig9004.18028.1 vs. uniprot
Match: D8LH52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH52_ECTSI) HSP 1 Score: 423 bits (1088), Expect = 2.130e-147 Identity = 207/248 (83.47%), Postives = 226/248 (91.13%), Query Frame = 1 Query: 1 QTAIRGGGGEDGIRVLTREESEAAIVSYAASAKRHRPIESEYSEYIGMLQGMQSWGEALTKKRVGCKRMVLGNFRRGNLVCIAAAEVVWSTGYLSRDVRLSIPLLVVNPKYDMRKVGFETIKRMQKFGMQNALLLDLSALMEVPSLRVFCLESTQTLDEDPEGMFQDPLVQQYNSRVRRSCYVLDDIPKWADLGPYWYEGVLPRGVRFFFRKRFHAVNEFEVSITRPGAGLSTGSGTVGGARVIPMHE 744 QT RGGG EDGIR LTREESEAAI+S+A SAKRH +S+Y ++I +LQGM+SWG+ LT+KRVGCKR+VLGNF+RGNLVCIAAA+VVWSTGYLSRDVRLS+ L+ VNPKYDMRKVGFETIKRM+ FGMQNALLLDLS LM VP LRVFCLESTQTLDEDPEG+FQDPLVQQYNSRVRRSCYVLDDIP WADLGPYWYEGVLPR VRFFFRKRFHAVNEFEV++ RPGAGLSTGSGTVGGARVI M E Sbjct: 46 QTTARGGG-EDGIRELTREESEAAILSFADSAKRHCRTQSDYDDHIELLQGMRSWGQPLTQKRVGCKRVVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMTVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDE 292
BLAST of mRNA_L-elsbetiae_contig9004.18028.1 vs. uniprot
Match: A0A835YSI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI1_9STRA) HSP 1 Score: 229 bits (585), Expect = 1.270e-71 Identity = 120/245 (48.98%), Postives = 164/245 (66.94%), Query Frame = 1 Query: 16 GGGGEDGIRVLTREESEAAIVSYAASAKRHRPIESEYSEYIGMLQGMQSWGEALTK-KRVGCKRMVLGNFRRGNLVCIAAAEVVWSTGYLSRDVRLSIPLLVVNPKYDMRKVGFETIKRMQKFGMQNALLLDLSALMEVPSLRVFCLESTQTLDEDPEGMFQDPLVQQYNSRVRRSCYVLDDIPKWADLGPYWYEGVLPRGVRFFFRKRFHAV-NEFEVSITRPGAGLSTGSGTVGGARVIPMHE 744 GGG DG+R +T + + A+ +Y A A ++ +E E + M+ M+ W + K KR+GCK+M LG++R G L+ +AA ++ W G+ RDVR+ + LL +NP +D R VGFE ++ ++ G NALLLD SAL EVP LRVF L S +TLD DPE + DP Y S V+R+C+VLD+IP+WADLGP+W+EG GV F+FRKR + NEFE+S P AG +TGSGTVGGARVI + E Sbjct: 10 GGGDGDGLRPMTAAQVKEALANYKAGAFKYCQSSAEQKEQLEMISMMREWADTFEKYKRIGCKKMTLGSYRAGRLLSVAALQIEWR-GFPERDVRMVVRLLALNPMHDKRIVGFEMMESLKALGRDNALLLDCSALREVPCLRVFALGSIRTLDADPELV--DPRKLFYKSHVKRTCFVLDNIPEWADLGPFWFEGTTHDGVSFWFRKRTPMLLNEFEISWDHPKAGNATGSGTVGGARVIGIGE 251
BLAST of mRNA_L-elsbetiae_contig9004.18028.1 vs. uniprot
Match: A0A0G4EB14_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EB14_VITBC) HSP 1 Score: 97.1 bits (240), Expect = 8.820e-20 Identity = 72/252 (28.57%), Postives = 124/252 (49.21%), Query Frame = 1 Query: 31 DGIRVLTREESEAAIVSYAASAKRHRPIESE------------YSEYIGMLQGMQSWGEALTKKRVGCKRMVLGNFRRGNLVCIAAAEVVWSTGYLSRDVRLSIPLLVVNPKY--DMRKVGFETIKRMQKFGMQNALLLDLSALMEVPSLRVFCLE-STQTLDEDPEGMFQDPLVQQYNSRVRRSCYVLDDIPKWADLGPYWYEGVLPRGVRFFFRKRFHAVNEFEVSITRPGAGLS-TGSGTVGGARVIPM 738 DG+RVL++EE+ +A + + S+ + +L M+ W +L + + R +G F L I + G S + + + +NP + + + + ++ +++ G +NA+++DL+AL + PSL F L+ S TLD +P + DP V ++ + +R +D W DL YW++ G F+FR+RF + EFEV P G+S TGSGTVGGA ++P+ Sbjct: 66 DGLRVLSQEEALSATERWLQVLTIGSSLSDTDDGSGAGGRGAVTSDEVDVLVRMRQWAGSL--EAMHRNRRCVGWFCSHRLRAIGCLHI----GRSSSINTMKLIYMALNPTFPGERDRAALDLLREIRELGKENAMIVDLTALKDFPSLMKFWLDGSFTTLDIEP--VTNDPRVVRHKALLRSPTLTIDG--PWPDLPFYWFQSECDDGCAFYFRRRFRSNTEFEVLFEPPRVGVSMTGSGTVGGALIVPL 307 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig9004.18028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig9004.18028.1 >prot_L-elsbetiae_contig9004.18028.1 ID=prot_L-elsbetiae_contig9004.18028.1|Name=mRNA_L-elsbetiae_contig9004.18028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=248bp QTAIRGGGGEDGIRVLTREESEAAIVSYAASAKRHRPIESEYSEYIGMLQback to top mRNA from alignment at L-elsbetiae_contig9004:365..5499- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig9004.18028.1 ID=mRNA_L-elsbetiae_contig9004.18028.1|Name=mRNA_L-elsbetiae_contig9004.18028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5135bp|location=Sequence derived from alignment at L-elsbetiae_contig9004:365..5499- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig9004:365..5499- >mRNA_L-elsbetiae_contig9004.18028.1 ID=mRNA_L-elsbetiae_contig9004.18028.1|Name=mRNA_L-elsbetiae_contig9004.18028.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1488bp|location=Sequence derived from alignment at L-elsbetiae_contig9004:365..5499- (Laminarionema elsbetiae ELsaHSoW15)back to top |