mRNA_L-elsbetiae_contig90.18012.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: D7FYS5_ECTSI (THUMP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS5_ECTSI) HSP 1 Score: 547 bits (1410), Expect = 2.350e-184 Identity = 325/535 (60.75%), Postives = 374/535 (69.91%), Query Frame = 2 Query: 419 PQERTSKATPAKDPNPSEAALARLESLVTEAPLWSAAVNVWRRFRTSQAXXXXXXXXXXXXXXXXXXXADTGGIND--------LDRPPEKEAGDGDASQAVGGVDVTRLKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAA-ACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLLGLPGIQRDNVKDRKRQXXXXXERECAVQDL--HRNGGGTEGAAASDEHGRSEKRERGNAISRPAGS--SSGASGASLDKADEV---TESGAKTNKHTYPPQQASQHSASPAFLQASN----ADLRREGKVGGGAAPGALWHVRARHKVNVGGLISHLLILQRTNEPSPVPRSGRRKRLVGMDAYCKHRKE 1963 PQ+ S A PA+ PN +EAALARLESLVT++PLW AA+NVW+RF+ SQA A GG++ L RP ++ DA + VG +DV LKFR+SVVRDG+HPF SVEASPRLGGAVWSVN GWTVDLKGYDVEVVA ILER V VGLALDGDRTKRCS+GR+P+EDKGFIETGKR+SSLRPSTAYLMLR+AEP GD++VDCMCGVGTIPFLGA WFP V L+GGE+DD AIDHLR N +S+RRS P AGAA ACAWDAQ LPLRD SVDAMVVDMPFG++CGTPRQNA+LYP VMAEMARVLRP SGR VLLV QPHLLG+PG++RDN KDRK+ ++ V D H G G EG AAS+E G E+ G + SR AG+ SS G S D AD E+ K K P + + ASPA + +N D R V AAPGALW +RARH VNVGGLISHLL+L RT+EP PR RR R+VG AYCK E Sbjct: 33 PQKIASGAAPAEGPNTTEAALARLESLVTDSPLWPAAINVWKRFKVSQARSTQAAA------------AGAGGVSGTEPRDCPALGRPGQEME---DAPRPVGDIDVAGLKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRGWTVDLKGYDVEVVAFILERGVAVGLALDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVDCMCGVGTIPFLGAGWFPGVCLVGGEIDDSAIDHLRRNAQSLRRS--PAGRAGAAGGACAWDAQSLPLRDGSVDAMVVDMPFGQSCGTPRQNARLYPLVMAEMARVLRP-SGRAVLLVTQPHLLGVPGLRRDNQKDRKK-LRKMAKQASRVGDRGDHDLGEGIEGRAASEETGSGER--CGESTSRHAGNINSSSDGGMSKDIADTAGHGVENVTKQEKEDVDPSDSGEL-ASPAPEKGTNDFPLCDSERSVCVAA-AAPGALWRIRARHAVNVGGLISHLLLLDRTDEPPRSPRVDRRHRVVGAKAYCKRHHE 544
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A6H5KUR7_9PHAE (THUMP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUR7_9PHAE) HSP 1 Score: 320 bits (820), Expect = 3.680e-99 Identity = 182/337 (54.01%), Postives = 214/337 (63.50%), Query Frame = 2 Query: 89 WYVALCLGGMQAVVKTEIERHVAACGQRAEVRMFNEDCRGAPVLFEGVHD------GQAGCGKLLVAT-----DASPEALRNLRCVQALFALVAHDESLDIGLPTPTNPAGAGGDPPRNVDPQERTSKATPAKDPNPSEAALARLESLVTEAPLWSAAVNVWRRFRTSQAXXXXXXXXXXXXXXXXXXXADTGGINDLDRPPEKEAG--DGDASQAVGGVDVTRLKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVD 1060 WY+ LCLGG+Q VVK E++RH+ A Q +V +F ED + G G L A A + +LR V LFALVAH SLDI T + PQ+ S A PA+DPN +EAALARLESLVT++PLW AA+NVW+ F+ SQA D G D P E G + DA +AVG +DV +KFR+SVVRDG+HPF SVEASPRLGGAVWSVN GWTVDLKGYDVEVVA ILER V VGLALDGDRTKRCS+GR+P+EDKGFIETGKR+SSLRPSTAYLMLR+AEP GD++VD Sbjct: 20 WYLLLCLGGLQTVVKAEVKRHLEASRQEGDVHVFEEDFGATHYVMTKTRSARPSRRGSLRPGGLREAAGGDRCSARDPEIASLRPVTGLFALVAHSASLDI-----TRIPRQAAESTSTSSPQKIASGAAPAEDPNTTEAALARLESLVTDSPLWPAAINVWKSFKVSQARSTEAAAAGA---------GDVSGTEPRDCPALGEPGQEEEDAPRAVGDIDVAGIKFRASVVRDGQHPFSSVEASPRLGGAVWSVNRGWTVDLKGYDVEVVAFILERGVAVGLALDGDRTKRCSHGRVPKEDKGFIETGKRMSSLRPSTAYLMLRMAEPVVGDVIVD 342
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A6H5KWC7_9PHAE (UPF0020 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWC7_9PHAE) HSP 1 Score: 275 bits (703), Expect = 1.820e-82 Identity = 175/308 (56.82%), Postives = 203/308 (65.91%), Query Frame = 2 Query: 1064 MCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAA-ACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLLGLPGIQRDNVKDRKR-QXXXXXERECAVQDLHRNGGGTEGAAASDEHGRSEKRERGNAISRPAGS--SSGASGASLDKADEV---TESGAKTNKHTYPPQQASQHSASPAFLQASNADLRREGKVGGGAA-PGALWHVRARHKVNVGGLISHLLILQRTNEPSPVPRSGRRKRLVGMDAYCKHRKE 1963 MCGVGTIP LGA WFP V L+GGE+DD AIDHLR N +S+RRS P AGAA ACAWDAQ LPLRD SVDAMVVDMPFG++CGTPRQNA+LYP VMAEMARVLRP SGR VLLV QPHLLG+ G++RDN KDRK+ + E + H GG EG AA +E G E+ G + S+ AGS SS G S D A + E+ K K P + ASPA + + + + GG AA PGALW +RARH VNVGGLISHLL+L RT+EP PR RR R+VG AYCK E Sbjct: 1 MCGVGTIPLLGAGWFPGVCLVGGEIDDSAIDHLRRNAQSLRRS--PAGRAGAAGGACAWDAQSLPLRDGSVDAMVVDMPFGQSCGTPRQNARLYPLVMAEMARVLRP-SGRAVLLVTQPHLLGVSGLRRDNQKDRKKLRKMATQESRVGDRGHHDLGGVIEGRAAPEEIGLGER--YGESTSQQAGSINSSSDGGMSKDVAGTMGHGVENVTKREKEDVDPSDSGDR-ASPAPEKGKHGCPLGDSERGGAAAAPGALWRIRARHAVNVGGLISHLLLLDRTDEPPRSPRVDRRYRVVGAKAYCKRHHE 302
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A024TEQ6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEQ6_9STRA) HSP 1 Score: 199 bits (505), Expect = 8.050e-53 Identity = 126/319 (39.50%), Postives = 167/319 (52.35%), Query Frame = 2 Query: 473 AALARLESLVTEAPLWSAAVNVWRRFRTSQAXXXXXXXXXXXXXXXXXXXADTGGINDLDRPPEKEAGDGDASQAVGGVDVTRLKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLAL-DGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLL 1426 A LA++ +LV AP+W +V VWR R E A DG L+FR+S VRDG+H + S + +G AV GWTV L ++VEVVAL+L VV+GL+L + +T GR+ E +S+LRPSTAY+ML+LA+ AGD+V+DCMCGVGT+P W P VF +GG+V +AI N + R AA C W A+ LPLR +SVD ++VDMPFG CG P +NA+LYP+ + +MARVLRPG G VLL L+ Sbjct: 92 AGLAQIGALVEHAPVWKDSVAVWRSGR------------------------------------ENAATDG-------------LRFRASCVRDGKHAYSSETIAGEVGAAVLKRQTGWTVSLVDFNVEVVALVLHHHVVLGLSLAENSKTVNFRGGRLAPEPCRLASLDY-ISTLRPSTAYMMLQLAKCDAGDVVLDCMCGVGTLPACAVLWGPSVFGIGGDVSSEAIAQAHVNFKCHR-----------AAICQWSAEKLPLRPNSVDRILVDMPFGMRCGNPVKNARLYPKAIGDMARVLRPG-GVAVLLAMSKKLV 348
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: W4FQN6_9STRA (UPF0020 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQN6_9STRA) HSP 1 Score: 189 bits (481), Expect = 2.230e-49 Identity = 109/236 (46.19%), Postives = 147/236 (62.29%), Query Frame = 2 Query: 722 LKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLAL-DGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLL 1426 L+FR S VRDG+H + S + +G AV +++P WTV L +DVEVVAL++ VV G++L + +T GR+ E + + + + +S+LRPSTAYLML+LA+ + GD+V+DCMCGVGT+P W VF LGG+V DA+D N TG A+ C W A+ LPLR + VD ++VDMPFG CG N+KLYP+ +AEMARVLR G VLLV LL Sbjct: 137 LRFRGSCVRDGKHAYSSEAIAGAVGTAVLNLHPKWTVSLSDFDVEVVALVMHSHVVCGISLAENSKTINYRGGRLAPEAR-HLSSLQYISTLRPSTAYLMLQLAKCQPGDVVLDCMCGVGTLPACAVRWGRHVFGLGGDVTRDAVDQASAN------CTGQY-----ASICQWSAENLPLRAACVDRILVDMPFGIRCGNSVNNSKLYPKAIAEMARVLRL-YGIAVLLVMSKKLL 359
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A485LJ24_9STRA (Aste57867_20172 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJ24_9STRA) HSP 1 Score: 184 bits (467), Expect = 9.260e-48 Identity = 105/238 (44.12%), Postives = 142/238 (59.66%), Query Frame = 2 Query: 713 VTRLKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLL 1426 + ++FR+S VRDG+H + S + ++G AV + G+ V L +D+EVV L++ VV+GL+L D G ++ I T K +S+LRPSTAYLML+LAE GDIV+DCMCGVGT+P W P V GG++ DA+ N + R + C W + LP+R ++VD ++VDMPFG CG QNAKLYP+ + EMARVLRPG GR VLLV LL Sbjct: 126 ASSVRFRASCVRDGKHAYSSETIAGKVGAAVVA-KFGYGVSLAAFDLEVVCLVMHHHVVLGLSLADDPEAINFRGSRLAPERRRIPTMKYMSTLRPSTAYLMLQLAECSIGDIVLDCMCGVGTLPASSVFWAPVV-AFGGDISTDAVAQANTNFQGQRANV-----------CQWSSAHLPVRSNAVDCVLVDMPFGLLCGNSTQNAKLYPKAIKEMARVLRPG-GRAVLLVMSKKLL 349
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: T0S6C0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S6C0_SAPDV) HSP 1 Score: 182 bits (461), Expect = 6.820e-47 Identity = 107/236 (45.34%), Postives = 147/236 (62.29%), Query Frame = 2 Query: 722 LKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGDRTKRCSNGRIPREDKGFIETG-KRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLL 1426 +FR+S VRDG+H + S + + +GGA+ + GW V L + +EVV +L VV G++L D K R+ E++ T + +S+LRPSTAY++L+LA AGDIV+D MCGVGTIP VF LGG+V++DA++ GR+V AA A C WD+Q LPLRD SVD +V+DMPFG CG+ ++N+KLYP+ MAE+ RVLR GR VLLV L+ Sbjct: 126 FRFRASCVRDGKHAYNSEKIAGEVGGALLE-HFGWKVSLTEFHMEVVCFVLHNHVVCGVSL-ADPRKIFFKSRLANEERHPSMTSIQYISTLRPSTAYMLLQLARIEAGDIVLDAMCGVGTIPASATYLAAPVFALGGDVEEDAVEKA---GRNV--------AARPATICQWDSQRLPLRDGSVDKIVIDMPFGVRCGSHQKNSKLYPRCMAELCRVLR-DHGRIVLLVMSKKLI 347
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A6G0WHI5_9STRA (UPF0020 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHI5_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.030e-46 Identity = 104/236 (44.07%), Postives = 146/236 (61.86%), Query Frame = 2 Query: 722 LKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGD-RTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLL 1426 ++FR+S VRDG H + S + ++G A+ WTV L +D+EVVA+++ V+ G++L D +T R+ E + + + + +S+LRPSTAYLML+LA AGD+V+DCMCGVGTIP + W P VF LGG+V DA+ R N + R AA C W ++ LPLR SVD ++VDMPFG CG +N++LYP+ + EMARVLRP +G VLLV +L Sbjct: 128 IRFRASCVRDGTHKYSSEVIAGKVGAAIVR-KFHWTVSLVDFDLEVVAIVMHHDVICGISLAADPKTINFRGARLAPEPRR-LASFQYMSTLRPSTAYLMLQLATCNAGDVVLDCMCGVGTIPACSSHWAP-VFGLGGDVSPDAVAQARVNLQQSPR----------AAVCLWSSERLPLRPESVDRILVDMPFGIQCGNATKNSRLYPKALQEMARVLRP-NGTAVLLVLSKKML 349
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A3R6WMH3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WMH3_9STRA) HSP 1 Score: 178 bits (452), Expect = 1.320e-46 Identity = 105/235 (44.68%), Postives = 139/235 (59.15%), Query Frame = 2 Query: 722 LKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFPKVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVAQPHLL 1426 L+FR S VRDG+H + S + +G AV +++P WTV L +DVEVVAL++ T GR+ E + + + + +S+LRPSTAYLML+LA+ + GD+V+DCMCGVGT+P W VF LGG+V DA+D N TG A+ C W A+ LPLR + VD ++VDMPFG CG N+KLYP+ +AEMARVLR G VLLV LL Sbjct: 37 LRFRGSCVRDGKHAYSSEAIAGAVGTAVLNLHPRWTVSLSDFDVEVVALVMH-----------SHTINYRGGRLAPEAR-HLSSLQYISTLRPSTAYLMLQLAKCQPGDVVLDCMCGVGTLPACAVRWGRHVFGLGGDVTRDAVDQASAN------CTGQN-----ASICQWSAENLPLRAACVDRILVDMPFGIRCGNSVNNSKLYPKAIAEMARVLRL-HGIAVLLVMSKKLL 247
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Match: A0A8K1FNN1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNN1_PYTOL) HSP 1 Score: 181 bits (460), Expect = 1.830e-46 Identity = 105/234 (44.87%), Postives = 141/234 (60.26%), Query Frame = 2 Query: 713 VTRLKFRSSVVRDGRHPFGSVEASPRLGGAVWSVNPGWTVDLKGYDVEVVALILERSVVVGLALDGDRTKRCSNGRIPREDKGFIETGKRVSSLRPSTAYLMLRLAEPRAGDIVVDCMCGVGTIPFLGASWFP-KVFLLGGEVDDDAIDHLRGNGRSVRRSTGPTRAAGAAAACAWDAQCLPLRDSSVDAMVVDMPFGKTCGTPRQNAKLYPQVMAEMARVLRPGSGRCVLLVA 1411 T FR S VRDGRH F SVE + +GGAV + GW VDL D+EVV L+ ++VGL+L D TK R+ ED+ + K VS+LRPST Y MLRLA + GDI++D MCGVGTIP A ++F LGGE+D + N ++ R+ + WD+ LPLR+ SVD +++D+PFG CG RQ++K+YP+V E+ RV+RPGS R VLL + Sbjct: 153 TTSPSFRGSCVRDGRHAFKSVEVAAEIGGAV-AEKFGWKVDLTQCDLEVVCLVFHTHMIVGLSL-ADTTKIQFRNRMANEDRSIMADSKYVSTLRPSTTYHMLRLAGYKKGDILLDSMCGVGTIPIWCAQVTENEIFALGGELDSLPVTKAGQNAQTKPRNVDIMQ---------WDSTRLPLRNESVDKVIIDLPFGVRCGNARQHSKIYPKVFKELYRVMRPGS-RAVLLTS 374 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig90.18012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig90.18012.1 >prot_L-elsbetiae_contig90.18012.1 ID=prot_L-elsbetiae_contig90.18012.1|Name=mRNA_L-elsbetiae_contig90.18012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=657bp MDEPRAARHEEHEPVNNDDVDWYVALCLGGMQAVVKTEIERHVAACGQRAback to top mRNA from alignment at L-elsbetiae_contig90:30550..35681+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig90.18012.1 ID=mRNA_L-elsbetiae_contig90.18012.1|Name=mRNA_L-elsbetiae_contig90.18012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5132bp|location=Sequence derived from alignment at L-elsbetiae_contig90:30550..35681+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig90:30550..35681+ >mRNA_L-elsbetiae_contig90.18012.1 ID=mRNA_L-elsbetiae_contig90.18012.1|Name=mRNA_L-elsbetiae_contig90.18012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3942bp|location=Sequence derived from alignment at L-elsbetiae_contig90:30550..35681+ (Laminarionema elsbetiae ELsaHSoW15)back to top |