mRNA_L-elsbetiae_contig8924.17940.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8924.17940.1
Unique NamemRNA_L-elsbetiae_contig8924.17940.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8924.17940.1 vs. uniprot
Match: A0A6H5JZH0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZH0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.100e-41
Identity = 88/175 (50.29%), Postives = 110/175 (62.86%), Query Frame = 1 
Query:    1 MSLIESNVRVENRLYHQSYH-------PPGRGDRETICVRADEGPYALTAAELASIESSKTREKLKTKADHVAQFHRKVVRRLAAEKRAAESCARGGKTINARIGSIDSFA---DVLESSRFTLEEEQRVLWE------QAPCYRVVKIIGERGDKGSLSDADTDARMTLAAYRR 477
            MSLIES +R E R+   S           GR     +    ++GP  L+AA+LAS ES KTR+KLK KADHVA+FHRKVVRRLA EKRAA +  RGG+ + A+IGS DSFA   D LE       E Q    E      +AP ++ +K+IG RG KGSL+DADT++RM LAAYR+
Sbjct:    1 MSLIESYIRAEERVRQASSRFGSVVGETHGRSVTVVVAAADNDGPCGLSAADLASFESEKTRDKLKLKADHVAKFHRKVVRRLATEKRAAHAHTRGGRAVKAQIGSADSFANFGDRLEPRGLAPREAQGTPREHTLPRDEAPNFQAIKVIGVRGHKGSLADADTESRMALAAYRQ 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8924.17940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZH0_9PHAE1.100e-4150.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8924contigL-elsbetiae_contig8924:1992..5956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003330.1
Exons3
Model size480
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8924.17940.1prot_L-elsbetiae_contig8924.17940.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8924 1992..5956 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816968.8324547-CDS-L-elsbetiae_contig8924:1991..20991622816968.8324547-CDS-L-elsbetiae_contig8924:1991..2099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8924 1992..2099 -
1691683949.3985975-CDS-L-elsbetiae_contig8924:1991..20991691683949.3985975-CDS-L-elsbetiae_contig8924:1991..2099Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8924 1992..2099 -
1622816968.8442023-CDS-L-elsbetiae_contig8924:2466..26461622816968.8442023-CDS-L-elsbetiae_contig8924:2466..2646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8924 2467..2646 -
1691683949.4095824-CDS-L-elsbetiae_contig8924:2466..26461691683949.4095824-CDS-L-elsbetiae_contig8924:2466..2646Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8924 2467..2646 -
1622816968.856822-CDS-L-elsbetiae_contig8924:5764..59561622816968.856822-CDS-L-elsbetiae_contig8924:5764..5956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8924 5765..5956 -
1691683949.418048-CDS-L-elsbetiae_contig8924:5764..59561691683949.418048-CDS-L-elsbetiae_contig8924:5764..5956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8924 5765..5956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8924.17940.1

>prot_L-elsbetiae_contig8924.17940.1 ID=prot_L-elsbetiae_contig8924.17940.1|Name=mRNA_L-elsbetiae_contig8924.17940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
MSLIESNVRVENRLYHQSYHPPGRGDRETICVRADEGPYALTAAELASIE
SSKTREKLKTKADHVAQFHRKVVRRLAAEKRAAESCARGGKTINARIGSI
DSFADVLESSRFTLEEEQRVLWEQAPCYRVVKIIGERGDKGSLSDADTDA
RMTLAAYRR*
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mRNA from alignment at L-elsbetiae_contig8924:1992..5956-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8924.17940.1 ID=mRNA_L-elsbetiae_contig8924.17940.1|Name=mRNA_L-elsbetiae_contig8924.17940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3965bp|location=Sequence derived from alignment at L-elsbetiae_contig8924:1992..5956- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCTTATTGAATCTAACGTCCGAGTAGAAAACCGGTTGTATCATCA
GAGCTATCACCCTCCAGGCCGAGGAGATCGGGAAACGATTTGTGTTCGTG
CTGATGAAGGACCTTACGCTCTTACAGCCGCCGAGCTTGCATCGATAGAG
AGCAGCAAGACCAGGGAGAAGCTCAAGACCAAGGCTGACCATGTGAGAAT
TCTGAATTGAAATTGCTGTTGATTTGCCGTCGGATCAAAATGCCCAAATA
GATATTCCCAGAGAACGTGGACACCTATCGCCTATCGCCCATGCAACAAG
CAAGGTGCAGCTACGACACAAGATAACAGACCCCCTGGACCGATTTTCGA
AGCTCGGTTACTCCGCAACGGGTATGATTCGAATACCAAACGATATGTTT
TCGGGCATCTTTTGATGAGACCTTTCCAGCGCCACCCTTTTCGGGACCGA
TGCTCTTCTCGCTGTGGAGTACTTGAGCTTTGAAAATCGGTCCAGGGGGT
GTGTCATCTTGTGTCGTATACAAAGTACGGCGGTACATGTACCTAACACA
CCAGACTTTTATGCCTCGCAGAATGCACGGGTGCGCGGAATTAGCATCCA
AAACAACCTCTCAGGGTATAGAGAGCAGAGTCTTGGAAGAATTAAAAAAC
GGTTAAATAAAAATAGCGTATGTGTACATAGGAGGTAGGTTCCCTGTCAC
AGAGGTCGGTACTGACACATGTGATCTTGTTTGGCTCTGTTCCTTTCCTT
TCTAGCCTCTCGTTTCCACTGCGGCCGCAGTGTGTAGAACATTCGAGGCG
CTTGCTACTGGGTGAATTTTTGGACCATGTGTGGAGTGTACAACAAATAT
CAAAGGGTAATGGACAAAAGTGGACGTACCCACCTCCTTTTGGGAAAAGT
GGGTGTACCCACCTCCTTTTGGGGCCTAAAGTGGGTGTAGGCCAACCGCG
GGCATGGGAGCTTGACATCATCCACGGCAAAACTAGCCAGGCCCTCTCGG
GCTATTTTAGATCGGACAAAGGTGGGTGCTTTTCGGACAGAAGTGGGTGT
AGGTCAAGACAAAAGTGGGTGCATGATAAATAGAGAAGAGTGGTTGTGGG
TGTACCCACCCAGCGGGTATCAGACAAAAGTGGGTTGCTCTGTTGAGGCC
TTGTGCGCCGCGGTGCTGTTCGAGCCATAAACGTGCTGGGAGGTTCGAAA
AAGTTGACTGCCATGCTCTGCCTAGGCCATGGTCGTGTCGCCTACGCGTG
TCAGAATCGCGTTTGAATGCTTTTGACTCCATGCTTGACGCTCCCATGTC
CACTTTTTCGCCTACACACCCACTTTTGTCCATTACCCAACATCAAATAT
CGGTTTCATTGCAATACGTTTTGTAGCTGTCTCTTGTAGGGGGCGCAGCT
TGCCCAAAAAGACGTATATGCTGTACACCACTGAGGGCCCGTCTTATCGC
AAAGCGGAATATAGAATATAGGTTTTCAGAAATCAAAAATCAAAAGGCCC
GTGCTGGCACCGTGCGCCAGCCCTAAGAGCTCACATTCCCCATCCCAAAC
GAAGTAAACCACACACGATGCAACCTACTGCTCATAACCAGCGTTGATGC
GGATTTCAGACCCTCAATCGCTCTGTAAGCGTTAGATCAGAGCTGCCTCC
GAACAAACTTTGAGGGGCTCGGCGAGACCGGCAGCAACAGACAGCAGTAG
CTGCCGTTAGTGACCTGCGTCACTATCTGCGGTGTTGGCAGGTGTCCTGC
CCGCCTTAGACCCTACTCTTGCCGTAGCGCGTAGTCTCGTCGTAGATTTA
AAACCTCTGTTTCTGCGCCCAAATCGCCCAAAATCGTGCTGTGCGTCTGC
GAACTGGCTCTCTCCTCTCTCTTTTTTTGTTTTTGTTTTTATTGTTCACA
TTTATTTCCAGTGCTCGATGGGCTCCCTGTCACGAGGACATCTTGCCAGA
ATACTGAACCGTGGTCACACAGAAGGGTTCCTTTCCCCAAGGCCGCCACT
ACCCCCGTTTGCGGTGCTTGACTAAGATTTTTGTCGCGAAAAAGGAAATC
CCCTCGTCGACGGTGAGATCGAAGTTTGTGTACACACGCTAAGCGCTATC
CACTAACAGGGACGGAAGCGAGAGAAAAATACTCGCTTCGCAAGAAAAAG
TCGCTTCCGCTGAGAGTCGAACTCACGACCTGCTTGATAGAAGGTGTTCG
GGGGTACCAACTAGACCACCGGGGCTCTCTATCGGACACCAAAGCTCGCG
ACGTCGAGAGTTAAGTGTCCTGCATAGATTGGTGCCCAATTTTTTGTCCC
ACCATGTAGCCAAGGGCCTTATCTACACACGCTCTCACCTTGCCTTGGAT
TAACTCCTCTTCCTGGAGCTTTCGACCCTCTTCGTTTCTGTCTACACTGA
AGCCCTGTGTTTTTTGGTTACCATGATGTCCCTCCCTAGAAAGCCCAAAC
CCCTATGCGCCCCCTAATAAACGAATTGCAATAACACTGATATGTGAAGC
TTGGCACACCGCCGCCCCATTTTAGCAGTTCCACGGCAAAGAGGGAGAGA
TGAAAAGAAAAAGCGCGAGACAAACTAAATAACAAGACTTGGGCTCTTAG
CCTAGGAGGTTATGCGCGTCGGTCGTCTTAGATTCATCATCTGGCGCCTT
TTTTTTGTTTCTGCCAAAAACGTTAGTTTTTCCAGCTCTGGCCGGCTTCC
CGCGACCGCGCGACGGTGCCACAACGTACGCTGAGACGTTTGACGTCTGA
CGGCCACGTCGTGCAGGAAGGGGTCTCTTGTTATGCGACGTTGGCTGTCT
GGGTAGATTGCTATAATGTCGTTGAGAACAGTGGGCTTCCGGTAACGTTC
AGTGGGCGTCTCTCTGCTCTGTAACCTCGCGCCGTGTTTCCTTGTGTGCC
CTGTTGCACACTACATACTCGCAGCGCAGCTCCAGCCCAGAGCTGGTCAT
TACTTCGGACGGTGGCGCACAGTTCACCAAAAACCACCTTGAGCCGCCTC
CAAGGAGGCCTATTCAAAGAATCCCCGTACACAAAACCCTCGCACGCTGC
TTACTCCATTCGTCTGTCTATCACACTGCGTGATGGGCATCCTAAGCGTG
ACCGTCGTGTACACCAGCTGAAACGGTCGAAACGTTGGTTCTTTCAGGGC
TATTTTGTCGCCCGACGACACCGTTGAATGCAGAGATAAATCTAGTCGCC
CCGGCTACCCGTGGCAAGTATTTTGTCTTGTACTTTACTCGAGCCTGTGT
TTTGAGAACCACGGGCTTCCCTGCATGACGCATGTTACCCTCTTGCTGAC
ATTTTTGCAGGTTGCACAATTCCACCGAAAGGTAGTCAGGCGTCTCGCTG
CAGAGAAGCGCGCGGCAGAATCCTGTGCTCGCGGTGGGAAGACTATCAAT
GCGCGAATAGGATCCATTGACAGCTTCGCAGACGTGTTGGAATCGAGTCG
ATTCACGCTAGAGGAGGAACAGAGAGTGCTGTGGGAACAGGTATGTGCTG
CGTGCATGATAATGCCGGGCTTGCCTTTTGGCCCTCGAAATACATCGAGT
TGATGTCTTGAGTTGTGCATAGCCGTTCCTCCAAAGCGGCGACCCCAGTC
GCAGCTTTTTTCAAGAGCCAACGTAGAGCTGAACTCGCGCTCCGTTTTTT
CTTGTACAGTAGTGTGTATTCGGTTGGTAGGTTGAAAATATGCGTATCCC
CACTGCTGTACTGCGTATCGTACACGGCCACATCCGGAACCAAAGTTGTT
CGTGGGTTTTGGTCGACGAGGGGCCTTTTGGGCCCCACCCCAAACTCCTT
GCTTGCTTGATGATTTTGCTGCCCTCGTCAATGCTTTGCATCGCCCCCGG
CACCCAGGCACCATGCTACCGAGTTGTGAAGATCATCGGAGAGCGCGGAG
ACAAGGGCAGCTTGTCAGATGCAGATACCGACGCAAGGATGACGCTAGCG
GCCTATCGTCGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8924:1992..5956-

>mRNA_L-elsbetiae_contig8924.17940.1 ID=mRNA_L-elsbetiae_contig8924.17940.1|Name=mRNA_L-elsbetiae_contig8924.17940.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig8924:1992..5956- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCTTATTGAATCTAACGTCCGAGTAGAAAACCGGTTGTATCATCA
GAGCTATCACCCTCCAGGCCGAGGAGATCGGGAAACGATTTGTGTTCGTG
CTGATGAAGGACCTTACGCTCTTACAGCCGCCGAGCTTGCATCGATAGAG
AGCAGCAAGACCAGGGAGAAGCTCAAGACCAAGGCTGACCATATGTCGCT
TATTGAATCTAACGTCCGAGTAGAAAACCGGTTGTATCATCAGAGCTATC
ACCCTCCAGGCCGAGGAGATCGGGAAACGATTTGTGTTCGTGCTGATGAA
GGACCTTACGCTCTTACAGCCGCCGAGCTTGCATCGATAGAGAGCAGCAA
GACCAGGGAGAAGCTCAAGACCAAGGCTGACCATGTTGCACAATTCCACC
GAAAGGTAGTCAGGCGTCTCGCTGCAGAGAAGCGCGCGGCAGAATCCTGT
GCTCGCGGTGGGAAGACTATCAATGCGCGAATAGGATCCATTGACAGCTT
CGCAGACGTGTTGGAATCGAGTCGATTCACGCTAGAGGAGGAACAGAGAG
TGCTGTGGGAACAGGTTGCACAATTCCACCGAAAGGTAGTCAGGCGTCTC
GCTGCAGAGAAGCGCGCGGCAGAATCCTGTGCTCGCGGTGGGAAGACTAT
CAATGCGCGAATAGGATCCATTGACAGCTTCGCAGACGTGTTGGAATCGA
GTCGATTCACGCTAGAGGAGGAACAGAGAGTGCTGTGGGAACAGGCACCA
TGCTACCGAGTTGTGAAGATCATCGGAGAGCGCGGAGACAAGGGCAGCTT
GTCAGATGCAGATACCGACGCAAGGATGACGCTAGCGGCCTATCGTCGAT
AGGCACCATGCTACCGAGTTGTGAAGATCATCGGAGAGCGCGGAGACAAG
GGCAGCTTGTCAGATGCAGATACCGACGCAAGGATGACGCTAGCGGCCTA
TCGTCGATAG
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