mRNA_L-elsbetiae_contig8884.17907.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8884.17907.1
Unique NamemRNA_L-elsbetiae_contig8884.17907.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8884.17907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8884contigL-elsbetiae_contig8884:6842..8159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816965.4195611-CDS-L-elsbetiae_contig8884:6843..70391622816965.4195611-CDS-L-elsbetiae_contig8884:6843..7039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 6844..7039 -
1691683946.902991-CDS-L-elsbetiae_contig8884:6843..70391691683946.902991-CDS-L-elsbetiae_contig8884:6843..7039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 6844..7039 -
1622816965.431536-CDS-L-elsbetiae_contig8884:8073..81591622816965.431536-CDS-L-elsbetiae_contig8884:8073..8159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 8074..8159 -
1691683946.9127789-CDS-L-elsbetiae_contig8884:8073..81591691683946.9127789-CDS-L-elsbetiae_contig8884:8073..8159Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8884 8074..8159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8884.17907.1prot_L-elsbetiae_contig8884.17907.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8884 6844..8159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8884.17907.1

>prot_L-elsbetiae_contig8884.17907.1 ID=prot_L-elsbetiae_contig8884.17907.1|Name=mRNA_L-elsbetiae_contig8884.17907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
KATTSFLTKPPTTGLYPETTRSSASELGTLLSYRCPYISSASAEPDLSTL
DAASTDHVLVLLQARGENTGRLQQIRVRVDWRIGSHGGVQSVSR
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mRNA from alignment at L-elsbetiae_contig8884:6842..8159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8884.17907.1 ID=mRNA_L-elsbetiae_contig8884.17907.1|Name=mRNA_L-elsbetiae_contig8884.17907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1318bp|location=Sequence derived from alignment at L-elsbetiae_contig8884:6842..8159- (Laminarionema elsbetiae ELsaHSoW15)
AAAGCAACTACATCTTTTCTGACCAAGCCACCTACCACCGGGCTTTATCC
AGAGACCACGAGGTCATCAGCCTCCGAACTCGGTACGTGGTCGTTCGATC
TATGTCAAGAACACACTTCTTGTGGCTCGTGCATGCAGAAGCATGCGCTG
TTCTGGTGGACCAGAACCTCTCTCGCTCTCTCATGTTAGACCTCGAGCTC
TGGTCCAACCCTCTAGACTAGTGACGAACGACTCCGTAACGTGATTTCAA
ATCCGACAATCGAACACGGGTTTCCACGTTCATCCGTGGATGCTTGCACA
TCAACGCCTGCACTCACCTACTCGCATTTTACTGGACTTGTAGGTATATA
ATTTTGTTTCATTTTAATTTTTATTTGTTTTTCTTTTGAATGAATGGGGG
GATTAGACATTATTCTGTAAACTTTATTTTTTATTTTTGTCTTTGTCCCT
CTCTCAATGTGCGCTGTAAGAGCACAGTAGTCATGCGCAAGGTGAGGCGC
AATAGGGCACTTACTTGGTAAGTGTGCCTGATTTCTTTTTTTTTCTCTTC
TGCTGTATGAAATACCTCTCGCGCGCGGTAAGAGCGCTGATGTACAGCAG
CGTGTTTGTGTTGTTGTGCACGGTAAGGCACACAGTGAGACGTCTGGTAA
GTGCGTCCGTGAGTGCAGATGTGTGACGCTGGGTGAGTGCGTCTGCCTGC
ACGATTGACATGGTCCGTTCGGCTGCGCATTTGTTTTTGTTTTTTTTCTC
TTCTGCTGTATGAAGTACCTCTCGCGCGCGGTAAGAGCGCTGATGTACAG
CAGCGTGTTTCTGTTCGTGCACGGTATGGCACAAAGAGTGATACGTCTGG
TAAGTGCGTCCGTGACTGACTGCTGATGTGTGACGCTTGGTGAGTGCGTC
TACCTGTACGATTCCCATGGTCCGTTCGGCTACGCTGCGCAGCACTTGTC
GGAAGTTTTTTCTTGTTATCTTGCTTTCGTGCCTGACGTTGGGTGAGGAC
GCAGGCACTTTCAGTTCTCCGTTTGTATGGGCTGCGGGGGGGGCGTGTTT
CTTTCTGGATTGATTATCCTTCCCGGCTACTCCTTTTTTTCGCTTATTGT
TTTCATGTTATGCTATGCAGCCTCTTGAGCTACCGCTGCCCTTACATATC
TTCGGCTTCAGCTGAGCCAGACCTATCGACTCTGGACGCCGCTTCAACCG
ACCACGTGTTGGTGCTGCTACAAGCAAGGGGGGAGAATACGGGTCGGTTG
CAGCAAATCCGGGTGCGGGTGGATTGGAGGATCGGAAGCCACGGCGGTGT
ACAAAGTGTTTCGCGTTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8884:6842..8159-

>mRNA_L-elsbetiae_contig8884.17907.1 ID=mRNA_L-elsbetiae_contig8884.17907.1|Name=mRNA_L-elsbetiae_contig8884.17907.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig8884:6842..8159- (Laminarionema elsbetiae ELsaHSoW15)
AAAGCAACTACATCTTTTCTGACCAAGCCACCTACCACCGGGCTTTATCC
AGAGACCACGAGGTCATCAGCCTCCGAACTCGGTACAAAGCAACTACATC
TTTTCTGACCAAGCCACCTACCACCGGGCTTTATCCAGAGACCACGAGGT
CATCAGCCTCCGAACTCGGTACCCTCTTGAGCTACCGCTGCCCTTACATA
TCTTCGGCTTCAGCTGAGCCAGACCTATCGACTCTGGACGCCGCTTCAAC
CGACCACGTGTTGGTGCTGCTACAAGCAAGGGGGGAGAATACGGGTCGGT
TGCAGCAAATCCGGGTGCGGGTGGATTGGAGGATCGGAAGCCACGGCGGT
GTACAAAGTGTTTCGCGTCCTCTTGAGCTACCGCTGCCCTTACATATCTT
CGGCTTCAGCTGAGCCAGACCTATCGACTCTGGACGCCGCTTCAACCGAC
CACGTGTTGGTGCTGCTACAAGCAAGGGGGGAGAATACGGGTCGGTTGCA
GCAAATCCGGGTGCGGGTGGATTGGAGGATCGGAAGCCACGGCGGTGTAC
AAAGTGTTTCGCGT
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