mRNA_L-elsbetiae_contig8873.17898.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8873.17898.1
Unique NamemRNA_L-elsbetiae_contig8873.17898.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: D7FN46_ECTSI (50S ribosomal protein L5, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN46_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 1.330e-29
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 159
            GIYGMDF+VVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG
Sbjct:  121 GIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: A0A087SET3_AUXPR (60S ribosomal protein L11-1 n=5 Tax=Chlorellaceae TaxID=35461 RepID=A0A087SET3_AUXPR)

HSP 1 Score: 86.3 bits (212), Expect = 2.010e-19
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYGMDFYVVL RPGYRVAKR+ + A++G QH+VTK DA+KWFQ +FEG+V
Sbjct:  123 GIYGMDFYVVLERPGYRVAKRRKQLARVGVQHRVTKDDAMKWFQTRFEGVV 173
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: A1DU38_ARTSF (Ribosomal protein L11 (Fragment) n=1 Tax=Artemia franciscana TaxID=6661 RepID=A1DU38_ARTSF)

HSP 1 Score: 81.6 bits (200), Expect = 1.110e-18
Identity = 33/51 (64.71%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYG+D+YVVL RPG+RVA+R+ K  K+G+QHK+TK DA+KWFQ K++GI+
Sbjct:   28 GIYGLDYYVVLGRPGFRVAERRKKTGKVGHQHKLTKEDAMKWFQQKYDGII 78
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: A0A383V6F3_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383V6F3_TETOB)

HSP 1 Score: 84.0 bits (206), Expect = 1.590e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYGMDFYVVL RPG+RVA+R+A  A++G QH+++K DA+KWFQ KFEG+V
Sbjct:  123 GIYGMDFYVVLERPGFRVARRRAPRARVGVQHRISKEDAIKWFQTKFEGVV 173
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: F0YKV5_AURAN (50S ribosomal protein L5, chloroplastic n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKV5_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.460e-18
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 159
            GIYGMDFYV L RPG+RVA+RKA+  K+G +HK+ K DA+KWFQ K+EGIV G
Sbjct:  132 GIYGMDFYVCLERPGFRVARRKARQGKVGIKHKIQKEDAIKWFQQKYEGIVLG 184
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: A0A061SAW5_9CHLO (Large subunit ribosomal protein L11e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAW5_9CHLO)

HSP 1 Score: 83.2 bits (204), Expect = 3.040e-18
Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GI+GMDFYVVL RPGYRV +R+ + +++G QH+VTK DA+KWFQ+KFEGIV
Sbjct:  123 GIFGMDFYVVLERPGYRVGRRRQRHSRVGVQHRVTKEDAIKWFQSKFEGIV 173
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: I0YXL9_COCSC (Ribosomal protein L5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YXL9_COCSC)

HSP 1 Score: 83.2 bits (204), Expect = 3.180e-18
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYGMDFYVVL R GYRVA+R+ + AK+G QH+V K DA+KWFQ KFEGIV
Sbjct:  123 GIYGMDFYVVLERAGYRVARRRQRLAKVGVQHRVGKDDAIKWFQTKFEGIV 173
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: A0A0K9NLH5_ZOSMR (60S ribosomal protein L11a n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLH5_ZOSMR)

HSP 1 Score: 83.2 bits (204), Expect = 3.180e-18
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:  122 GIYGMDFYVVLERPGYRVARRRRAKARVGIQHRVTKDDAMKWFQVKYEGVI 172
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: A0A3P6F0I7_BRAOL (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=A0A3P6F0I7_BRAOL)

HSP 1 Score: 82.4 bits (202), Expect = 5.300e-18
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:  113 GIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 163
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BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Match: M4DM59_BRARP (Uncharacterized protein n=2 Tax=Brassica campestris TaxID=3711 RepID=M4DM59_BRARP)

HSP 1 Score: 82.4 bits (202), Expect = 6.060e-18
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 GIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV 153
            GIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:  119 GIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8873.17898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN46_ECTSI1.330e-2998.1150S ribosomal protein L5, chloroplastic n=2 Tax=Ec... [more]
A0A087SET3_AUXPR2.010e-1972.5560S ribosomal protein L11-1 n=5 Tax=Chlorellaceae ... [more]
A1DU38_ARTSF1.110e-1864.71Ribosomal protein L11 (Fragment) n=1 Tax=Artemia f... [more]
A0A383V6F3_TETOB1.590e-1868.63Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
F0YKV5_AURAN2.460e-1867.9250S ribosomal protein L5, chloroplastic n=2 Tax=Au... [more]
A0A061SAW5_9CHLO3.040e-1868.63Large subunit ribosomal protein L11e n=1 Tax=Tetra... [more]
I0YXL9_COCSC3.180e-1872.55Ribosomal protein L5 n=2 Tax=Coccomyxa TaxID=41891... [more]
A0A0K9NLH5_ZOSMR3.180e-1868.6360S ribosomal protein L11a n=1 Tax=Zostera marina ... [more]
A0A3P6F0I7_BRAOL5.300e-1868.63Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
M4DM59_BRARP6.060e-1868.63Uncharacterized protein n=2 Tax=Brassica campestri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8873contigL-elsbetiae_contig8873:516..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue1.6e-20
Seed eggNOG ortholog2880.D7FN46
Preferred nameRPL11
KEGG koko:K02868,ko:K10523,ko:K15076
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0094@1,KOG0397@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400,ko04121
Ec32 ortholog descriptionRibosomal protein L5
Ec32 orthologEc-06_008360.1
Exons2
Model size237
Cds size150
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8873.17898.1prot_L-elsbetiae_contig8873.17898.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8873 528..852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.619936-UTR-L-elsbetiae_contig8873:515..5271622816964.619936-UTR-L-elsbetiae_contig8873:515..527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8873 516..527 +
1691683946.3191774-UTR-L-elsbetiae_contig8873:515..5271691683946.3191774-UTR-L-elsbetiae_contig8873:515..527Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8873 516..527 +
1622816964.6558726-UTR-L-elsbetiae_contig8873:852..9271622816964.6558726-UTR-L-elsbetiae_contig8873:852..927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8873 853..927 +
1691683946.35308-UTR-L-elsbetiae_contig8873:852..9271691683946.35308-UTR-L-elsbetiae_contig8873:852..927Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8873 853..927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.635911-CDS-L-elsbetiae_contig8873:527..6471622816964.635911-CDS-L-elsbetiae_contig8873:527..647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8873 528..647 +
1691683946.3315177-CDS-L-elsbetiae_contig8873:527..6471691683946.3315177-CDS-L-elsbetiae_contig8873:527..647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8873 528..647 +
1622816964.646143-CDS-L-elsbetiae_contig8873:822..8521622816964.646143-CDS-L-elsbetiae_contig8873:822..852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8873 823..852 +
1691683946.343901-CDS-L-elsbetiae_contig8873:822..8521691683946.343901-CDS-L-elsbetiae_contig8873:822..852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8873 823..852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8873.17898.1

>prot_L-elsbetiae_contig8873.17898.1 ID=prot_L-elsbetiae_contig8873.17898.1|Name=mRNA_L-elsbetiae_contig8873.17898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
MDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG*
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mRNA from alignment at L-elsbetiae_contig8873:516..927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8873.17898.1 ID=mRNA_L-elsbetiae_contig8873.17898.1|Name=mRNA_L-elsbetiae_contig8873.17898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=412bp|location=Sequence derived from alignment at L-elsbetiae_contig8873:516..927+ (Laminarionema elsbetiae ELsaHSoW15)
GGTATTTACGGAATGGACTTTTACGTTGTGCTCAACCGCCCGGGATACCG
CGTGGCGAAGCGCAAGGCGAAGTGCGCGAAGATTGGTTACCAACACAAGG
TCACCAAGACTGACGCCGTCAAGTGGTTCCAGGTAGGTGGAAACTATAAA
ACCTTGTTTTTATAGCATACGAGTACACTGGTGTGGGTGGAGTACAGTTT
GCCACCGAGGAAAGGGTAAACATGAAGCGGGCTGCGCGTCACGTTGATGG
TTCTTTTTTGTCTTAATATTCTCGCTTTCTCTTCCGATGTATGCTCTGGT
CCCACAGGCGAAGTTCGAGGGCATCGTGACGGGCTAAGTCGGGTTGTCCT
ACATCGACATCTTCTAGCGCTGTAGCTGTTGCTCGGGTAGGCCCAGCAGG
GCGAAAGGGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8873:516..927+

>mRNA_L-elsbetiae_contig8873.17898.1 ID=mRNA_L-elsbetiae_contig8873.17898.1|Name=mRNA_L-elsbetiae_contig8873.17898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig8873:516..927+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTTTTACGTTGTGCTCAACCGCCCGGGATACCGCGTGGCGAAGCG
CAAGGCGAAGTGCGCGAAGATTGGTTACCAACACAAGGTCACCAAGACTG
ACGCCGTCAAGTGGTTCCAGATGGACTTTTACGTTGTGCTCAACCGCCCG
GGATACCGCGTGGCGAAGCGCAAGGCGAAGTGCGCGAAGATTGGTTACCA
ACACAAGGTCACCAAGACTGACGCCGTCAAGTGGTTCCAGGCGAAGTTCG
AGGGCATCGTGACGGGCTAAGCGAAGTTCGAGGGCATCGTGACGGGCTAA
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