mRNA_L-elsbetiae_contig8873.17897.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8873.17897.1
Unique NamemRNA_L-elsbetiae_contig8873.17897.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8873.17897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8873contigL-elsbetiae_contig8873:127..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size364
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.5845442-CDS-L-elsbetiae_contig8873:126..4891622816964.5845442-CDS-L-elsbetiae_contig8873:126..489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8873 127..489 +
1691683946.3000233-CDS-L-elsbetiae_contig8873:126..4891691683946.3000233-CDS-L-elsbetiae_contig8873:126..489Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8873 127..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8873.17897.1prot_L-elsbetiae_contig8873.17897.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8873 127..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8873.17897.1

>prot_L-elsbetiae_contig8873.17897.1 ID=prot_L-elsbetiae_contig8873.17897.1|Name=mRNA_L-elsbetiae_contig8873.17897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
VFQPKKRSRFRKSYRRRLPRPLTVSPSISSQTYETEEVYDHRCCAPTHQH
VNGMPRKNRNMVQRQVPSGAPSATLIFRTKAQVSLALLWRSWCHCGTPLT
IACMMSKHVERTRLSETEFV*
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mRNA from alignment at L-elsbetiae_contig8873:127..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8873.17897.1 ID=mRNA_L-elsbetiae_contig8873.17897.1|Name=mRNA_L-elsbetiae_contig8873.17897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=363bp|location=Sequence derived from alignment at L-elsbetiae_contig8873:127..489+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTCAACCCAAAAAACGCTCAAGATTTCGAAAAAGTTATCGCCGAAG
ACTTCCGAGACCGTTAACGGTCTCTCCCAGCATAAGTTCCCAGACTTATG
AGACAGAGGAAGTTTACGATCATCGTTGCTGCGCCCCAACGCACCAACAC
GTAAACGGGATGCCGCGAAAGAACAGGAATATGGTTCAGCGCCAGGTACC
TTCTGGTGCCCCGAGCGCAACTTTAATTTTTCGAACTAAAGCTCAGGTCT
CATTAGCACTTCTTTGGAGGTCTTGGTGTCATTGCGGAACCCCGCTAACG
ATCGCGTGCATGATGTCCAAACATGTAGAGAGAACCAGGTTAAGCGAAAC
CGAATTCGTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8873:127..489+

>mRNA_L-elsbetiae_contig8873.17897.1 ID=mRNA_L-elsbetiae_contig8873.17897.1|Name=mRNA_L-elsbetiae_contig8873.17897.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig8873:127..489+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTTTCAACCCAAAAAACGCTCAAGATTTCGAAAAAGTTATCGCCGAAG
ACTTCCGAGACCGTTAACGGTCTCTCCCAGCATAAGTTCCCAGACTTATG
AGACAGAGGAAGTTTACGATCATCGTTGCTGCGCCCCAACGCACCAACAC
GTAAACGGGATGCCGCGAAAGAACAGGAATATGGTTCAGCGCCAGGTACC
TTCTGGTGCCCCGAGCGCAACTTTAATTTTTCGAACTAAAGCTCAGGTCT
CATTAGCACTTCTTTGGAGGTCTTGGTGTCATTGCGGAACCCCGCTAACG
ATCGCGTGCATGATGTCCAAACATGTAGAGAGAACCAGGTTAAGCGAAAC
CGAATTCGTCTGAGTGTTTCAACCCAAAAAACGCTCAAGATTTCGAAAAA
GTTATCGCCGAAGACTTCCGAGACCGTTAACGGTCTCTCCCAGCATAAGT
TCCCAGACTTATGAGACAGAGGAAGTTTACGATCATCGTTGCTGCGCCCC
AACGCACCAACACGTAAACGGGATGCCGCGAAAGAACAGGAATATGGTTC
AGCGCCAGGTACCTTCTGGTGCCCCGAGCGCAACTTTAATTTTTCGAACT
AAAGCTCAGGTCTCATTAGCACTTCTTTGGAGGTCTTGGTGTCATTGCGG
AACCCCGCTAACGATCGCGTGCATGATGTCCAAACATGTAGAGAGAACCA
GGTTAAGCGAAACCGAATTCGTCTGA
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