mRNA_L-elsbetiae_contig887.17895.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig887.17895.1
Unique NamemRNA_L-elsbetiae_contig887.17895.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig887.17895.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.620e-37
Identity = 62/105 (59.05%), Postives = 80/105 (76.19%), Query Frame = 2 
Query:    2 ILVSWIHQRWVWHSGDFMGPSSYLVYYEEAQGSPLPLIGMANFMGLECSYDQAFRAWKAHQSSSPHDDYTTHGLTEETIQWMNATMASLLPPPLALRYGVYPTDL 316
            ILVSW HQR++WH+   M PSS++V+YE+ +      IGMA+FMGL CS + A   W+AH++ +PH DY+THGL +ET+QWMN TMA LLPP LALR+GV PTDL
Sbjct:  280 ILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTPTDL 384
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BLAST of mRNA_L-elsbetiae_contig887.17895.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.510e-35
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 2 
Query:    2 ILVSWIHQRWVWHSGDFMGPSSYLVYYEEAQGSPLPLIGMANFMGLECSYDQAFRAWKAHQSSSPHDDYTTHGLTEETIQWMNATMASLLPPPLALRYGVYPTDL 316
            ILVSW HQR++WH+   M PSS++V+YE+ +      IGMA+FMGL CS + A   W+AH++ +PH DY+THGL  ETIQWMN TMA LLPP LA R+GV PTDL
Sbjct:  346 ILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTPTDL 450
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BLAST of mRNA_L-elsbetiae_contig887.17895.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.130e-34
Identity = 59/105 (56.19%), Postives = 84/105 (80.00%), Query Frame = 2 
Query:    2 ILVSWIHQRWVWHSGDFMGPSSYLVYYEEAQGSPLPLIGMANFMGLECSYDQAFRAWKAHQSSSPHDDYTTHGLTEETIQWMNATMASLLPPPLALRYGVYPTDL 316
            +LVSW+HQR++WH+GD MGPSS++ +Y+E Q SP+  +G+A  MGLECS DQA++ WKAH+ +SP+  + T  L E TIQ+MNATMA LLPP +A+++G+ PT+L
Sbjct:  297 VLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGFATR-LGEATIQFMNATMARLLPPSVAIQWGLTPTEL 400
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BLAST of mRNA_L-elsbetiae_contig887.17895.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 7.280e-32
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:    2 ILVSWIHQRWVWHSGDFMGPSSYLVYYEEAQGSPLPLIGMANFMGLECSYDQAFRAWKAHQSSSPHDDYTTHGLTEETIQWMNATMASLLPPPLALRYGVYPTDL 316
            +LVSWIHQR++WH+G  MGPSS++  YEE Q S L LI +A FMGL+CS  QA + W   +  SP   Y + GL+ ET+ +MNATMA LLPP LALR+ V PT+L
Sbjct:  194 VLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTPTEL 298
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BLAST of mRNA_L-elsbetiae_contig887.17895.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.700e-29
Identity = 57/132 (43.18%), Postives = 79/132 (59.85%), Query Frame = 2 
Query:    5 LVSWIHQRWVWHSGDFMGPSSYLVYYEEAQ-----------------------------GSPLPLIGMANFMGLECSYDQAFRAWKAHQSSSPHDDYTTHGLTEETIQWMNATMASLLPPPLALRYGVYPTD 313
            +VSW HQRWVWH+   +  SS++++Y++ Q                              +P+ +I +A FMGLECS DQA   W++HQ++ PH DYTTHGL   TI+WMNATMASLLP  ++L +G+ PTD
Sbjct:  167 IVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTPTD 298
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig887.17895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXT7_ECTSI5.620e-3759.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6E2_9PHAE2.510e-3559.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE1.130e-3456.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JZR3_9PHAE7.280e-3256.19Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLX3_9PHAE1.700e-2943.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig887contigL-elsbetiae_contig887:30472..31483 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size610
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig887.17895.1prot_L-elsbetiae_contig887.17895.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig887 30763..31431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.4120355-UTR-L-elsbetiae_contig887:30471..307621622816964.4120355-UTR-L-elsbetiae_contig887:30471..30762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig887 30472..30762 -
1691683946.1514256-UTR-L-elsbetiae_contig887:30471..307621691683946.1514256-UTR-L-elsbetiae_contig887:30471..30762Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig887 30472..30762 -
1622816964.4448364-UTR-L-elsbetiae_contig887:31431..314831622816964.4448364-UTR-L-elsbetiae_contig887:31431..31483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig887 31432..31483 -
1691683946.1843667-UTR-L-elsbetiae_contig887:31431..314831691683946.1843667-UTR-L-elsbetiae_contig887:31431..31483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig887 31432..31483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.4225132-CDS-L-elsbetiae_contig887:30762..309871622816964.4225132-CDS-L-elsbetiae_contig887:30762..30987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig887 30763..30987 -
1691683946.1620173-CDS-L-elsbetiae_contig887:30762..309871691683946.1620173-CDS-L-elsbetiae_contig887:30762..30987Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig887 30763..30987 -
1622816964.4332416-CDS-L-elsbetiae_contig887:31389..314311622816964.4332416-CDS-L-elsbetiae_contig887:31389..31431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig887 31390..31431 -
1691683946.1748972-CDS-L-elsbetiae_contig887:31389..314311691683946.1748972-CDS-L-elsbetiae_contig887:31389..31431Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig887 31390..31431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig887.17895.1

>prot_L-elsbetiae_contig887.17895.1 ID=prot_L-elsbetiae_contig887.17895.1|Name=mRNA_L-elsbetiae_contig887.17895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MGPSSYLVYYEEAQGSPLPLIGMANFMGLECSYDQAFRAWKAHQSSSPHD
DYTTHGLTEETIQWMNATMASLLPPPLALRYGVYPTDL*
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mRNA from alignment at L-elsbetiae_contig887:30472..31483-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig887.17895.1 ID=mRNA_L-elsbetiae_contig887.17895.1|Name=mRNA_L-elsbetiae_contig887.17895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1012bp|location=Sequence derived from alignment at L-elsbetiae_contig887:30472..31483- (Laminarionema elsbetiae ELsaHSoW15)
GATCCTGGTATCGTGGATACATCAGCGATGGGTGTGGCACTCGGGAGATT
TCATGGGGCCTTCTTCCTACTTGGTCTACTACGAGGAGGCGCAGGTGCGT
GACATAGAGCGCCAAAAAGAAAAATATCGGGATATCGACGAGTGAGAGCT
GGTACTTACTGCCTCTCCCCTTTCTTTTCGATTTCCTTCCGAATGTATCC
AGGCAGTAAGCACATATGCTGCCCAAGAGTTTGCAGAACGCGCGTTTAGC
GGCGCACGACGTTGTGCGCCGACATCTGGAACGCCTCGTGCCCCGCCCTC
CACAACAAAAGCCGCCGATGTATCATTGTGTCTGACCAACGCGTGTAGAA
GTCCTCTGCGCAATTAAGCGATACATAGCGTCGTACCTCTAAAATAGCTC
TTGAGCGAGTTGCAAGGGGGACCGGCCAGCATCCTGTTGGACGGAAATGA
CTGACTGTTTTGATACCGCACCTTCCACGCGTCGTCCTTTGCTCAGGGAA
GTCCCCTGCCGTTGATTGGGATGGCCAACTTCATGGGCCTCGAGTGTTCC
TACGACCAGGCGTTCCGGGCGTGGAAGGCTCACCAAAGCTCATCCCCGCA
TGACGACTACACGACCCACGGGCTCACAGAGGAGACTATTCAGTGGATGA
ACGCCACAATGGCTAGTCTGCTTCCGCCGCCTCTGGCTCTCCGTTATGGA
GTATACCCGACCGACCTCTAAGTCAGAAATCCAACAGCGGGGATTTCGGA
ATATTTGCTTTCGCTAGGAAAAAGCCCACTCGACAAGTTTATCGTGCAAG
CTTATGGTGTATTTGGAGCCTTGGCCGGTCCCCCTCCGTATGTGCCAACC
CTGTGCAGCTTAAAGGTAGACGAATCTAGGGAATAGGGTTGGTCGTGACG
AATGCCGAAGACATATGTAGAGGCAAACGCCCTATTCCCAGGCGTATATT
ATGGCTCTTGAACATTATTTTGATCACCGAGTACCCAGAAAATATGGTTC
AGTTTCCCCTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig887:30472..31483-

>mRNA_L-elsbetiae_contig887.17895.1 ID=mRNA_L-elsbetiae_contig887.17895.1|Name=mRNA_L-elsbetiae_contig887.17895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig887:30472..31483- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCCTTCTTCCTACTTGGTCTACTACGAGGAGGCGCAGATGGGGCC
TTCTTCCTACTTGGTCTACTACGAGGAGGCGCAGGGAAGTCCCCTGCCGT
TGATTGGGATGGCCAACTTCATGGGCCTCGAGTGTTCCTACGACCAGGCG
TTCCGGGCGTGGAAGGCTCACCAAAGCTCATCCCCGCATGACGACTACAC
GACCCACGGGCTCACAGAGGAGACTATTCAGTGGATGAACGCCACAATGG
CTAGTCTGCTTCCGCCGCCTCTGGCTCTCCGTTATGGAGTATACCCGACC
GACCTCTAAGGAAGTCCCCTGCCGTTGATTGGGATGGCCAACTTCATGGG
CCTCGAGTGTTCCTACGACCAGGCGTTCCGGGCGTGGAAGGCTCACCAAA
GCTCATCCCCGCATGACGACTACACGACCCACGGGCTCACAGAGGAGACT
ATTCAGTGGATGAACGCCACAATGGCTAGTCTGCTTCCGCCGCCTCTGGC
TCTCCGTTATGGAGTATACCCGACCGACCTCTAA
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