mRNA_L-elsbetiae_contig8869.17892.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8869.17892.1
Unique NamemRNA_L-elsbetiae_contig8869.17892.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8869.17892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8869contigL-elsbetiae_contig8869:7204..8173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size970
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8869.17892.1prot_L-elsbetiae_contig8869.17892.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8869 7647..8144 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.0461817-UTR-L-elsbetiae_contig8869:7203..76461622816964.0461817-UTR-L-elsbetiae_contig8869:7203..7646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8869 7204..7646 +
1691683945.8847396-UTR-L-elsbetiae_contig8869:7203..76461691683945.8847396-UTR-L-elsbetiae_contig8869:7203..7646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8869 7204..7646 +
1622816964.0688472-UTR-L-elsbetiae_contig8869:8144..81731622816964.0688472-UTR-L-elsbetiae_contig8869:8144..8173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8869 8145..8173 +
1691683945.9097667-UTR-L-elsbetiae_contig8869:8144..81731691683945.9097667-UTR-L-elsbetiae_contig8869:8144..8173Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8869 8145..8173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816964.0571027-CDS-L-elsbetiae_contig8869:7646..81441622816964.0571027-CDS-L-elsbetiae_contig8869:7646..8144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8869 7647..8144 +
1691683945.9001346-CDS-L-elsbetiae_contig8869:7646..81441691683945.9001346-CDS-L-elsbetiae_contig8869:7646..8144Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8869 7647..8144 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8869.17892.1

>prot_L-elsbetiae_contig8869.17892.1 ID=prot_L-elsbetiae_contig8869.17892.1|Name=mRNA_L-elsbetiae_contig8869.17892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=166bp
MGRLVYHKPSGSAVFSFSGVAEGFLCRLNTYIKYVELTLCVQTRYMGDFP
KTNACTGKAVSSQRRMLPYFPLARCMYVCICSDCLTLHPPVPSPPRVSLP
SASRVLSDRRGYILGAAAGGPLRLRGGPLRLRACARRCSLSFVLRFTILA
LHAYFCTWHAYLATF*
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mRNA from alignment at L-elsbetiae_contig8869:7204..8173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8869.17892.1 ID=mRNA_L-elsbetiae_contig8869.17892.1|Name=mRNA_L-elsbetiae_contig8869.17892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=970bp|location=Sequence derived from alignment at L-elsbetiae_contig8869:7204..8173+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCAGATATCTTGGACTGATAAAAGTATCACAGCAGGCTTGGGGTGTA
GTTATACTTCTATATATTTTCTCCTCCCATTATTGGCATATTCGTCGTCT
GCTCCACTGCCCCCCCATACTCCGCTACGACTAGCTAGACGACCCAACCG
GGGCCACACAGAAGGGGGGTGTGTGGACCCCCTCCTGGGATGCCTGCGTC
AGATGCGTTTATCGCGAGCAGGGTTCAGCACTCCCCACACTCGTCAACAA
TGAAGTCGAAGTAATATTTACTAACGAAATCGCTTTCAATTTTCCTGGAA
CGAATATGAGAAAATGTATGTGTTTATGCACGCGTGATAGTTCAATTGGC
TCCGTAAAAGTATTTTTGAACCCAAGTCGTCGGGTCGCTAAAACATACTA
AGGGTCGCCTTGTATTCAGTTGTTCTGGTTGGTTCTGCGCGCTATGGGGC
GTCTTGTATATCATAAGCCCTCAGGCTCGGCAGTATTTTCTTTCTCCGGG
GTGGCCGAGGGCTTCCTCTGCAGGCTAAATACCTACATAAAATACGTAGA
ACTAACTCTCTGCGTACAGACTAGATACATGGGCGACTTTCCGAAAACGA
ATGCTTGCACTGGCAAGGCAGTTAGTTCCCAACGACGGATGCTTCCGTAT
TTTCCCCTTGCTCGTTGTATGTATGTATGTATATGTAGTGATTGTCTGAC
TCTGCACCCCCCTGTTCCCTCGCCCCCCCGTGTCTCTCTTCCTTCCGCCT
CTCGGGTACTCTCTGATCGGCGCGGATATATTCTCGGCGCCGCGGCGGGT
GGTCCACTTCGTCTCCGGGGTGGTCCACTTCGTCTCCGGGCGTGTGCCCG
CCGGTGTTCCCTCTCTTTTGTGTTACGCTTCACGATTTTGGCTTTACATG
CGTATTTTTGTACATGGCATGCGTACCTCGCAACGTTTTAAAACACGGGG
TTGCTTTTACCATCTGTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8869:7204..8173+

>mRNA_L-elsbetiae_contig8869.17892.1 ID=mRNA_L-elsbetiae_contig8869.17892.1|Name=mRNA_L-elsbetiae_contig8869.17892.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=996bp|location=Sequence derived from alignment at L-elsbetiae_contig8869:7204..8173+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGCGTCTTGTATATCATAAGCCCTCAGGCTCGGCAGTATTTTCTTT
CTCCGGGGTGGCCGAGGGCTTCCTCTGCAGGCTAAATACCTACATAAAAT
ACGTAGAACTAACTCTCTGCGTACAGACTAGATACATGGGCGACTTTCCG
AAAACGAATGCTTGCACTGGCAAGGCAGTTAGTTCCCAACGACGGATGCT
TCCGTATTTTCCCCTTGCTCGTTGTATGTATGTATGTATATGTAGTGATT
GTCTGACTCTGCACCCCCCTGTTCCCTCGCCCCCCCGTGTCTCTCTTCCT
TCCGCCTCTCGGGTACTCTCTGATCGGCGCGGATATATTCTCGGCGCCGC
GGCGGGTGGTCCACTTCGTCTCCGGGGTGGTCCACTTCGTCTCCGGGCGT
GTGCCCGCCGGTGTTCCCTCTCTTTTGTGTTACGCTTCACGATTTTGGCT
TTACATGCGTATTTTTGTACATGGCATGCGTACCTCGCAACGTTTTAAAT
GGGGCGTCTTGTATATCATAAGCCCTCAGGCTCGGCAGTATTTTCTTTCT
CCGGGGTGGCCGAGGGCTTCCTCTGCAGGCTAAATACCTACATAAAATAC
GTAGAACTAACTCTCTGCGTACAGACTAGATACATGGGCGACTTTCCGAA
AACGAATGCTTGCACTGGCAAGGCAGTTAGTTCCCAACGACGGATGCTTC
CGTATTTTCCCCTTGCTCGTTGTATGTATGTATGTATATGTAGTGATTGT
CTGACTCTGCACCCCCCTGTTCCCTCGCCCCCCCGTGTCTCTCTTCCTTC
CGCCTCTCGGGTACTCTCTGATCGGCGCGGATATATTCTCGGCGCCGCGG
CGGGTGGTCCACTTCGTCTCCGGGGTGGTCCACTTCGTCTCCGGGCGTGT
GCCCGCCGGTGTTCCCTCTCTTTTGTGTTACGCTTCACGATTTTGGCTTT
ACATGCGTATTTTTGTACATGGCATGCGTACCTCGCAACGTTTTAA
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