mRNA_L-elsbetiae_contig8862.17885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8862.17885.1
Unique NamemRNA_L-elsbetiae_contig8862.17885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig8862.17885.1 vs. uniprot
Match: D7G2T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 3.300e-46
Identity = 159/344 (46.22%), Postives = 197/344 (57.27%), Query Frame = 1 
Query:    1 QALLALSWLAAKARLFHAYEQAGLVSPLPPEQQQQDCQRDYEQXXXXXXXXXXLPFPTDLSEAPEVVRHSRDVFVSWGDSSRRGGLRRATPRDWGGPGGKEEAVRMGEAGTKGERLARALGASREMMCCYGGLEGELRVVQGLEAAREKMLLRMQRLHAEITASRPATHGGPAXXXXXXXXXXXXXXXXXXXXXXTLATLGGGASGARSGQLRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPTGLSTRLSASRR----QPTTRTR-------KNTASSRTLLSPFCLSLLGSRSAEKVSLSLEAVSRARAALEGLEEGRGHSGRWCRWVFSALAAADS 999
            + LLALSW+ AKA++F A+EQA LVSPLP      +    + +           PFP D+SE PEV R S + F ++  +    G R   P DWGG  GKEE VRMGEA  KGE +ARALGA+REMM CYGGLEGELRVV+GLE AR++MLLRM+ L  ++  S+P +                                G  A+  R+ + R E XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   QPTT+T        +   + R  +SPFCL L+  R   ++S SL  V+RAR  L+ L+EGR H+GRWCRW  SAL AA+S
Sbjct:  150 EVLLALSWMMAKAKVFPAFEQARLVSPLPTTTPATNPTPPHGENVSASSPTPP-PFPRDVSETPEVRRVSAEAFAAFLATE---GRRSVPPPDWGGRLGKEEGVRMGEAEAKGEGMARALGAAREMMSCYGGLEGELRVVEGLETARQRMLLRMRSLFRDVAESQPGS--------------------------------GKVAASPRTTEARPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPTTKTTSRCQRPSRKKCTPRAEVSPFCLCLVACRPPGELSRSLAKVTRAREVLDALDEGREHAGRWCRWASSALVAAES 457
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BLAST of mRNA_L-elsbetiae_contig8862.17885.1 vs. uniprot
Match: A0A6H5KBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF2_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.700e-44
Identity = 158/331 (47.73%), Postives = 191/331 (57.70%), Query Frame = 1 
Query:    7 LLALSWLAAKARLFHAYEQAGLVSPLPPEQQQQDCQRDYEQXXXXXXXXXXLPFPTDLSEAPEVVRHSRDVFVSWGDSSRRGGLRRATPRDWGGPGGKEEAVRMGEAGTKGERLARALGASREMMCCYGGLEGELRVVQGLEAAREKMLLRMQRLHAEITASRPATHGGPAXXXXXXXXXXXXXXXXXXXXXXTLATLGGGASGARSGQLRLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPTGLSTRLSASRRQPTTRTRKNTASSRTLLSPFCLSLLGSRSAEKVSLSLEAVSRARAALEGLEEGRGHSGRWCRWVFSALAAADS 999
            LLALSW+ AKA+ F A+EQ+ LVSPLP +            XXXXXXXXXX  FP D+SE PEV R S + F ++  +  R   R   P DWGG  GKEEAVRMGEA  KGE +ARALGA+REMM CYGGLE ELRVV+GLE AR++ML RM+ L  ++  S P + G  A              XXXXXXXX         S +R+G             XXXXXXXXX                    T  +ASR Q  +R +K+T  +    SPFCL L+  RS  ++S SL  VSRAR  L+ L+EGR H+GRWCRW  SAL AA+S
Sbjct:  422 LLALSWMMAKAKAFPAFEQSRLVSPLPTKTPANPTPPQGG-XXXXXXXXXXXXFPRDVSETPEVRRVSAEAFAAFLAAEER---RSVPPPDWGGRLGKEEAVRMGEAEAKGEGMARALGAAREMMSCYGGLEAELRVVEGLETARQRMLRRMRSLFRDVAESHPGS-GKVAASLRTIETGPGYQQXXXXXXXXXXXXXPSAMSTSRAGTADATAMPGRAGAXXXXXXXXXSATQP---------------TTKTASRCQRPSR-KKHTPPAEA--SPFCLCLVAGRSPGELSRSLAKVSRAREVLDALDEGREHAGRWCRWASSALVAAES 729
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8862.17885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2T0_ECTSI3.300e-4646.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF2_9PHAE3.700e-4447.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8862contigL-elsbetiae_contig8862:4732..8081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1053
Cds size1053
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8862.17885.1prot_L-elsbetiae_contig8862.17885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8862 4732..8081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816963.6514666-CDS-L-elsbetiae_contig8862:4731..48871622816963.6514666-CDS-L-elsbetiae_contig8862:4731..4887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 4732..4887 +
1691683945.5980926-CDS-L-elsbetiae_contig8862:4731..48871691683945.5980926-CDS-L-elsbetiae_contig8862:4731..4887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 4732..4887 +
1622816963.670564-CDS-L-elsbetiae_contig8862:5100..51731622816963.670564-CDS-L-elsbetiae_contig8862:5100..5173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 5101..5173 +
1691683945.6071305-CDS-L-elsbetiae_contig8862:5100..51731691683945.6071305-CDS-L-elsbetiae_contig8862:5100..5173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 5101..5173 +
1622816963.6837738-CDS-L-elsbetiae_contig8862:5317..55111622816963.6837738-CDS-L-elsbetiae_contig8862:5317..5511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 5318..5511 +
1691683945.6153584-CDS-L-elsbetiae_contig8862:5317..55111691683945.6153584-CDS-L-elsbetiae_contig8862:5317..5511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 5318..5511 +
1622816963.694658-CDS-L-elsbetiae_contig8862:7451..80811622816963.694658-CDS-L-elsbetiae_contig8862:7451..8081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 7452..8081 +
1691683945.6332824-CDS-L-elsbetiae_contig8862:7451..80811691683945.6332824-CDS-L-elsbetiae_contig8862:7451..8081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8862 7452..8081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8862.17885.1

>prot_L-elsbetiae_contig8862.17885.1 ID=prot_L-elsbetiae_contig8862.17885.1|Name=mRNA_L-elsbetiae_contig8862.17885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=351bp
QALLALSWLAAKARLFHAYEQAGLVSPLPPEQQQQDCQRDYEQHQQQQQQ
QQPLPFPTDLSEAPEVVRHSRDVFVSWGDSSRRGGLRRATPRDWGGPGGK
EEAVRMGEAGTKGERLARALGASREMMCCYGGLEGELRVVQGLEAAREKM
LLRMQRLHAEITASRPATHGGPAATHGGPAATHGGPAATHGGPAATLATL
GGGASGARSGQLRLEQLRLAQQQQQQQQQQQQEERRQAPRASAPAATPTG
LSTRLSASRRQPTTRTRKNTASSRTLLSPFCLSLLGSRSAEKVSLSLEAV
SRARAALEGLEEGRGHSGRWCRWVFSALAAADSEIAAAAPAAAAAAAARV
G
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mRNA from alignment at L-elsbetiae_contig8862:4732..8081+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8862.17885.1 ID=mRNA_L-elsbetiae_contig8862.17885.1|Name=mRNA_L-elsbetiae_contig8862.17885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3350bp|location=Sequence derived from alignment at L-elsbetiae_contig8862:4732..8081+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCTTGCTGGCTTTGTCTTGGCTGGCGGCGAAAGCCAGACTTTTCCA
CGCGTACGAACAGGCTGGTCTCGTCTCGCCCCTTCCCCCAGAGCAGCAGC
AGCAGGACTGTCAGCGGGACTACGAGCAGCATCAGCAGCAGCAGCAGCAG
CAGCAGGTGCAGCAGCAGCAGCAGGTGCAGCAGCAGCGGCAGCAGCGGCA
GCAGCAGGCGCGGTCACAACAGCAGCTACAACAACTACAACCATATCAAC
ACCACCAGCACCGCCAGCAGCAGCAGCAGCAGCAGCAGCACCACTACCAA
GAGGACTGTCAGCGGGACTGTCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCAGCAGCAGCAGCCGCTGCCGTTCCCGACCGATCTGTCCGAGG
CCCCAGAAGTCGTACGACACTCCAGAGACGTTTTCGTGTCGTGTCTCCAG
GAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAAGCAGGTGC
GCCCCACAAGCATCAGCAGCAGCAGCGGCGGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCGGCAGCGGCGGTGGCGGGGGGCGGTAGGGGGCGACAGCAGC
AGAAGAGGGGGGCTCCGGCGGGCGACCCCAAGGGACTGGGGGGGCCCCGG
GGGCAAGGAGGAGGCGGTCCGGATGGGGGAGGCCGGGACGAAGGGCGAGC
GGCTGGCGAGGGCGCTGGGGGCTTCGCGCGAGATGATGTGCTGCTACGGG
GGGCTCGAGGGGGAGCTGAGGGTTGTCCAGGTGGGTACGTACATACGCCA
CCTTCTAAGAACCAGGTCCTGGGTTCGAGCCCCTGCGAAGCCAGTGTTTT
TTTCTCGCGCTCGTTCCTGGAAAATTGAAAGCGATTTCGTTAGTAAATAT
TAGTATTGATTCAACTTATAGAAGCGGAAATTAAACCATTAGACCAGTCT
AAATTAGACTGGTCTAATGGTTAGATTTCGTTAGTAAACATTAATATTAC
TTCGACTTATAGAAGCGGAAATTAAACCATTAGACCAGTCTAAAATTAGA
CTGGTCTCTAAATTAGACTGGTCTAATGGTTTAATTTCCGCTTCTACTAA
AGTTAGTCGTGGGGGTTCAAATGACCCGACACACTTTCACTCCCGAGGAG
GGGGACTCCCTTTGCCAGTGCTACTGTCCATCTAATGTTTATTTCGCTTC
ACTCGGCCGAATGTCAGTCGCCCATACTCTCAACGAGTATCCAGGGCCTC
GGGACCTTCTCTATCACCAATACTCTGGCCAGGAGTATCCAGGGTCTCAA
GAGAAAAAAATGCTCAGTCTGGGATTCGAACCCACGACTAACTTTTATAG
AAGTGGAAATTAAACCAAGACCAGTGATTATTATTATTTATATTTCTCCT
CCGATTATTGGCTTTTTCGTCGTCTGCCCCACTGGCCCCCATGCTCCACT
ACGACTAGCTAGACGACCCGACCGGGGTCACACAGGAGGGGGAGGGTGGA
TCCCCTCCTACGGTGCCTGCCTGTTGTATTTTTATCGCGGCGAAATTATG
TGTTTTTGTAGACGTGTGGGAGCTCTTTTGTTTGCAGAATTTTCACTCGT
CGGAGAAAGAAGCGGCGCTACTTTTTTTAGGGGTGCTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTCTGTTTTCTCCTGTTTTTTCGTGTGTTTTT
TTGTGCATTTGGTTTTTTGGGTGCGACGGAAATCGGCTGCCGGGAATGGG
CAGAATTTTTTCTCGTGTGAGAAAGAAGCGGCGCCACTTTGTTTTGTATG
TATGTATGTACGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCCATCC
AGATTTTTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTTC
GTGTTTTTGTTTATTGTGCATTTTTTTTGGGTGTCTTGCACACCTACCGT
AGGTGAAACAAGATACCACACCCCATCGGACCGACTTTTGGAGCTCCATT
GCTCCGGAACGAAGAGGGTGCCAGCACACCGAACGACACGTTTTCGGACA
TCCCTGGACTAGATCTTTCGAACGCGACCCCCCCTTTCGGCACTGGCACT
CGTCTTGCTGGGGAGGAATCGAGCGTAAAAGTCTGTCTAGGGGGTGTGGT
ATCTTGTGTCACCTACAGTACGCATGTACGAGAGGCGACGTGGAGGGTGT
GTGGCGGAGTACATACATACACGGTATCGAATATCGGGGGTAGCTTTCTC
TGCTGCTTTTTTGTTGCGAGAGAAGCCGATCGCAACGGTAATATGGAGCG
ATGCGAGAAGCTGTTGGAGGGTATCGAAGACGTCGTTCTAAGCGGGCACG
CGGAGAATGTTTATATATTTCACGGTCGTGGTGCCCCTACGTATGTCTAC
CCCTGGTTTGTAAGAGGGCAGGCATGTAGGTGCCCCTCTCTTTGACCGGT
ATAATAGTTTCAGTTCAAGCTGGGCAAATAATTTCCAATATTCTATATAT
GTATAGAAATTCAGCCCCGGTTGTCCTTCGCCGCTCTCGCCCCCCCCCTC
CCTACCCTTGCGGGGCCCCGTGTCCCTGCGGGGGGCACTTTGCTCCCGTT
TGTGCACGCACGACACGCAGGGCCTGGAGGCGGCGAGAGAGAAGATGCTC
CTGCGGATGCAGCGCCTTCACGCGGAAATCACCGCCTCCCGACCCGCCAC
CCACGGGGGCCCTGCTGCCACCCACGGGGGCCCTGCTGCCACCCACGGGG
GCCCTGCTGCCACCCACGGGGGCCCTGCCGCCACCCTTGCGACTCTCGGG
GGGGGGGCGTCAGGGGCACGGAGCGGGCAGCTTCGACTCGAGCAGCTTCG
ACTCGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGAGC
GACGACAAGCACCCCGCGCTTCGGCTCCTGCAGCGACACCGACGGGACTG
TCAACGAGACTGTCAGCCAGTCGGCGGCAGCCCACTACGAGAACGAGAAA
GAACACCGCCTCCTCGAGAACGCTGCTCTCTCCTTTCTGCCTCAGCCTGC
TCGGCAGCAGGTCAGCCGAGAAGGTTTCTCTCTCACTCGAAGCTGTGTCG
CGAGCCCGCGCCGCCCTGGAGGGGCTGGAGGAGGGGAGGGGGCACAGCGG
CCGGTGGTGCAGGTGGGTGTTCTCGGCGCTCGCGGCGGCTGATTCGGAAA
TTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTCGTGTTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8862:4732..8081+

>mRNA_L-elsbetiae_contig8862.17885.1 ID=mRNA_L-elsbetiae_contig8862.17885.1|Name=mRNA_L-elsbetiae_contig8862.17885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2106bp|location=Sequence derived from alignment at L-elsbetiae_contig8862:4732..8081+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCCTTGCTGGCTTTGTCTTGGCTGGCGGCGAAAGCCAGACTTTTCCA
CGCGTACGAACAGGCTGGTCTCGTCTCGCCCCTTCCCCCAGAGCAGCAGC
AGCAGGACTGTCAGCGGGACTACGAGCAGCATCAGCAGCAGCAGCAGCAG
CAGCAGCAGGCCTTGCTGGCTTTGTCTTGGCTGGCGGCGAAAGCCAGACT
TTTCCACGCGTACGAACAGGCTGGTCTCGTCTCGCCCCTTCCCCCAGAGC
AGCAGCAGCAGGACTGTCAGCGGGACTACGAGCAGCATCAGCAGCAGCAG
CAGCAGCAGCAGCCGCTGCCGTTCCCGACCGATCTGTCCGAGGCCCCAGA
AGTCGTACGACACTCCAGAGACGTTTTCGTGTCGTCCGCTGCCGTTCCCG
ACCGATCTGTCCGAGGCCCCAGAAGTCGTACGACACTCCAGAGACGTTTT
CGTGTCGTGGGGCGACAGCAGCAGAAGAGGGGGGCTCCGGCGGGCGACCC
CAAGGGACTGGGGGGGCCCCGGGGGCAAGGAGGAGGCGGTCCGGATGGGG
GAGGCCGGGACGAAGGGCGAGCGGCTGGCGAGGGCGCTGGGGGCTTCGCG
CGAGATGATGTGCTGCTACGGGGGGCTCGAGGGGGAGCTGAGGGTTGTCC
AGGGGGCGACAGCAGCAGAAGAGGGGGGCTCCGGCGGGCGACCCCAAGGG
ACTGGGGGGGCCCCGGGGGCAAGGAGGAGGCGGTCCGGATGGGGGAGGCC
GGGACGAAGGGCGAGCGGCTGGCGAGGGCGCTGGGGGCTTCGCGCGAGAT
GATGTGCTGCTACGGGGGGCTCGAGGGGGAGCTGAGGGTTGTCCAGGGCC
TGGAGGCGGCGAGAGAGAAGATGCTCCTGCGGATGCAGCGCCTTCACGCG
GAAATCACCGCCTCCCGACCCGCCACCCACGGGGGCCCTGCTGCCACCCA
CGGGGGCCCTGCTGCCACCCACGGGGGCCCTGCTGCCACCCACGGGGGCC
CTGCCGCCACCCTTGCGACTCTCGGGGGGGGGGCGTCAGGGGCACGGAGC
GGGCAGCTTCGACTCGAGCAGCTTCGACTCGCGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGGAGGAGCGACGACAAGCACCCCGCGCTTCGG
CTCCTGCAGCGACACCGACGGGACTGTCAACGAGACTGTCAGCCAGTCGG
CGGCAGCCCACTACGAGAACGAGAAAGAACACCGCCTCCTCGAGAACGCT
GCTCTCTCCTTTCTGCCTCAGCCTGCTCGGCAGCAGGTCAGCCGAGAAGG
TTTCTCTCTCACTCGAAGCTGTGTCGCGAGCCCGCGCCGCCCTGGAGGGG
CTGGAGGAGGGGAGGGGGCACAGCGGCCGGTGGTGCAGGTGGGTGTTCTC
GGCGCTCGCGGCGGCTGATTCGGAAATTGCTGCTGCTGCTCCTGCTGCTG
CTGCTGCTGCTGCTGCTCGTGTTGGCGGCCTGGAGGCGGCGAGAGAGAAG
ATGCTCCTGCGGATGCAGCGCCTTCACGCGGAAATCACCGCCTCCCGACC
CGCCACCCACGGGGGCCCTGCTGCCACCCACGGGGGCCCTGCTGCCACCC
ACGGGGGCCCTGCTGCCACCCACGGGGGCCCTGCCGCCACCCTTGCGACT
CTCGGGGGGGGGGCGTCAGGGGCACGGAGCGGGCAGCTTCGACTCGAGCA
GCTTCGACTCGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGG
AGGAGCGACGACAAGCACCCCGCGCTTCGGCTCCTGCAGCGACACCGACG
GGACTGTCAACGAGACTGTCAGCCAGTCGGCGGCAGCCCACTACGAGAAC
GAGAAAGAACACCGCCTCCTCGAGAACGCTGCTCTCTCCTTTCTGCCTCA
GCCTGCTCGGCAGCAGGTCAGCCGAGAAGGTTTCTCTCTCACTCGAAGCT
GTGTCGCGAGCCCGCGCCGCCCTGGAGGGGCTGGAGGAGGGGAGGGGGCA
CAGCGGCCGGTGGTGCAGGTGGGTGTTCTCGGCGCTCGCGGCGGCTGATT
CGGAAATTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTGCTGCTCGT
GTTGGC
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