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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-18_002780.1 |
| Exons | 5 |
| Model size | 505 |
| Cds size | 501 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816962.9318779-CDS-L-elsbetiae_contig8854:4822..4852 | 1622816962.9318779-CDS-L-elsbetiae_contig8854:4822..4852 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 4823..4852 + |
| 1691683945.0565567-CDS-L-elsbetiae_contig8854:4822..4852 | 1691683945.0565567-CDS-L-elsbetiae_contig8854:4822..4852 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 4823..4852 + |
| 1622816962.942627-CDS-L-elsbetiae_contig8854:5027..5174 | 1622816962.942627-CDS-L-elsbetiae_contig8854:5027..5174 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 5028..5174 + |
| 1691683945.0713966-CDS-L-elsbetiae_contig8854:5027..5174 | 1691683945.0713966-CDS-L-elsbetiae_contig8854:5027..5174 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 5028..5174 + |
| 1622816962.9532182-CDS-L-elsbetiae_contig8854:5381..5452 | 1622816962.9532182-CDS-L-elsbetiae_contig8854:5381..5452 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 5382..5452 + |
| 1691683945.089498-CDS-L-elsbetiae_contig8854:5381..5452 | 1691683945.089498-CDS-L-elsbetiae_contig8854:5381..5452 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 5382..5452 + |
| 1622816962.9641492-CDS-L-elsbetiae_contig8854:6812..7009 | 1622816962.9641492-CDS-L-elsbetiae_contig8854:6812..7009 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 6813..7009 + |
| 1691683945.1029356-CDS-L-elsbetiae_contig8854:6812..7009 | 1691683945.1029356-CDS-L-elsbetiae_contig8854:6812..7009 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 6813..7009 + |
| 1622816962.9746087-CDS-L-elsbetiae_contig8854:7478..7534 | 1622816962.9746087-CDS-L-elsbetiae_contig8854:7478..7534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 7479..7534 + |
| 1691683945.1139028-CDS-L-elsbetiae_contig8854:7478..7534 | 1691683945.1139028-CDS-L-elsbetiae_contig8854:7478..7534 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig8854 7479..7534 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8854.17875.1 >prot_L-elsbetiae_contig8854.17875.1 ID=prot_L-elsbetiae_contig8854.17875.1|Name=mRNA_L-elsbetiae_contig8854.17875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
GTEPAVEASQWHCTDGARSIMSPAAKQLGDPNLTASFSKGISALGWTSSG
ALGRDLLQKLFIEGYDYTDDGVSITTIRFGPWGIGLEGSSEALYTTQTSC
EDDGALATGVEVTFQGEEDRAEVVVAMRLRCAKITSTCVAPPFSTSDSGA
GVGEALSTGTSSPIRDI back to topmRNA from alignment at L-elsbetiae_contig8854:4823..7536+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig8854.17875.1 ID=mRNA_L-elsbetiae_contig8854.17875.1|Name=mRNA_L-elsbetiae_contig8854.17875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2714bp|location=Sequence derived from alignment at L-elsbetiae_contig8854:4823..7536+ (Laminarionema elsbetiae ELsaHSoW15)
GGAACGGAGCCCGCTGTCGAAGCATCGCAGGTACCGAGACAGGGCTAACC
TAATCCACTTTCGTAATGGCTTACCGTAAACCCTGATGTGCATGCTATAA
AATGTTAACCCGCCTTACATAAGCACCGCAGTGTGTAGAGGGATAGCGTA
AATATGCAAGTAACCGACCATCTTTCCCCCCCCTTGACGATTTTGAAAAC
CAAAGTGGCACTGCACAGACGGAGCGAGGTCGATCATGAGCCCAGCAGCG
AAACAGCTTGGCGACCCGAACTTGACTGCATCGTTCAGCAAGGGAATCAG
CGCCTTGGGATGGACGTCGAGCGGGGCTTTGGGCCGTGACCTCTTGCAGA
AGGTCTTGTCTCACCCAGCCTGTTTCCGAATCATCCAACCAATAGCAAGC
AGATTTACCGGGTAGATCCGCTCAATTTACCTACTACTCGCCTTTTCTTC
GTAGCTCTGTAAGACGGAAAGCGCACAGCATGTGAGTGAGCATATATGAG
ATCCATCCACGGCGCTAAACATTTGGGTTATGTACGTGCCGCACCCGCCT
CGGCAGCAGTTGTTTATCGAAGGGTACGACTACACCGATGACGGCGTCAG
CATCACCACCATCCGGTTCGGTCCTTGGGGGTGAGTTTGCGTGATGCCTT
GTCTTTTTGAGCCAGAACGAAAATCAAGGTGTAAGGGGGGGGTGTGGCCC
TATAGCAGCCTTAGCCTTTGTTCACTGTCGAGTATTTATTGCGTGCGTTT
CCCTGTCCGCGTTCACCGTGCACAACATTCACCGCACACAACGATATCGT
CCAAGTGCACACTTGCGTTCAGCCATGCTCGACTCCTTGTCCATGTGCTC
ATGCACTGTAGTATCTAAAAACATAGGTTCATACATCCATATAGTTTGCG
TGCACCTCTCTCGTCTCTCTTTCTCTCTCTCTACTCTACTCTAGCCGCCG
CGATCGAGGTGTGTTGTGCGATGTGCGGGTGTGCGTGCACAGCCTTTCTC
CCCCGACGGCCCGATATATACAACGAGGCATTGATGAATGCTGTGAATTC
TGCACCAGCTGTTCTGCACCTTGTGCGGGACTTCTCAACCTTTTTGGAGG
TTAGCGTTGTCAAGGTTCACCGCTGGGTTGAGTTGCGGGACCTTGTGGTA
TTTCATACCTTGCCCAAGGTACTGAAATCTTTACGCGCTCAAAGGTTGAC
CCGACAAGGTTATTTTTTCGAGGCTTGCGGGACCTTGTGGCATTTCATGC
ATTGCTCAAGGTGTAGACAACCTTTAGTACGCTCAAAGGTTGTTAAGGTC
ATTTTTGTCGAGGCTTGCGAGACCCTGCAGCTTTTCATACCTTGCCCAAG
GTGGCAGCAACCTTCACCATGCGCAAAGGTTGACAGGGTTGTTTTATCAA
GAGTTGTGGACACCTTGTGGGGTTTGCTAGATTATGCAAGGTGTTCTCAA
GGTTAATATCGTCAACACCTCGGGCAGGGGGCGGGAGGGGGTGGCCACCT
GTGTGTGGGAGAATCCGGTCTCGCGCATTACTCAAGCAAGAGACACCCGC
ATAGCTCAGGCTGGGAAGGCGCCTTGATCCGTTGTTGGCAGGTCGAAACG
CCCCCTCCCTAAAAAGTATCGTGGATACCCCCCTCAAATGTCACATTCCT
GATACCTAGCTAAAACAGCTCGAGAAACACAGACGTCGTAAGTATGCTAA
CAACATATATGCCACCGTAGACTAGCCCAAGGCGAGAGGAAGGCGCGAGC
GGTATACTCCTGTCAAGCAAAATGACAACGACTATGTGTAGACCTTTCCA
CTTCCACGTCCGCGCGATGAAGCCATATTGACCGACCGCCCAGCCCTCCT
TCTTTCATGCACCCCTTGTACGTGTGCACGGGCGCTGTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGCCACGTCCGTGTTT
TCTGTGTGTCTTCTCGCCACCCGGCATCACGGGGGGAAAGGATTGGCCTC
GAGGGTAGTTCTGAGGCTCTCTACACGACTCAAACAAGCTGCGAGGACGA
CGGAGCGCTAGCCACGGGTGTCGAGGTGACATTTCAGGGCGAAGAAGACA
GAGCAGAGGTCGTCGTGGCGATGAGGCTGCGATGCGCCAAGATCACCTCG
ACCTGCGTCGCCCCCCCCTTCAGCACGTCCGACTCGGGTATGTAGACTAT
GTACGCACTGGTATATTTTATCCCATGATACTGTTGTACGTAGATATACA
TATATATGCAGTACGCGTCGAAAGTTGAATCACGTGTGACCCGACAAGTT
AGCATTCCCTGGCTAGCCCGTTGTTGGTAGTCGTGCCCCTCTAAGGCGAT
GGCGTTTCCTCAAACGTTAGCAGCTCGAAAAGTTTGATCTCGGTTTGAAG
TTTGTGGTTGATCGCATCCACTTACGCGTGTGCTATTGATAGTGCTGATG
CTTCCTGGGTTGTGATATATATATGTGGTGCGCTCAAGTGTATAGTCTAG
TGGCCGCATGCATCTTGCTCGGCTCGAACAACTGCAGTACAGTAATTTAT
CCACCGGTATTAGCAGCACTTCTACGAGTAGATACAGATTGGTGAAATAC
ACCTCCTCCATGGATTTCGCCCGCATGTTGCCGCTTTCTGTCCAACACCT
ACGTAGGTGCCGGAGTTGGCGAAGCTTTGTCTACCGGCACGTCATCTCCT
ATACGAGACATCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig8854:4823..7536+ >mRNA_L-elsbetiae_contig8854.17875.1 ID=mRNA_L-elsbetiae_contig8854.17875.1|Name=mRNA_L-elsbetiae_contig8854.17875.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig8854:4823..7536+ (Laminarionema elsbetiae ELsaHSoW15)
GGAACGGAGCCCGCTGTCGAAGCATCGCAGGGAACGGAGCCCGCTGTCGA
AGCATCGCAGTGGCACTGCACAGACGGAGCGAGGTCGATCATGAGCCCAG
CAGCGAAACAGCTTGGCGACCCGAACTTGACTGCATCGTTCAGCAAGGGA
ATCAGCGCCTTGGGATGGACGTCGAGCGGGGCTTTGGGCCGTGACCTCTT
GCAGAAGTGGCACTGCACAGACGGAGCGAGGTCGATCATGAGCCCAGCAG
CGAAACAGCTTGGCGACCCGAACTTGACTGCATCGTTCAGCAAGGGAATC
AGCGCCTTGGGATGGACGTCGAGCGGGGCTTTGGGCCGTGACCTCTTGCA
GAAGTTGTTTATCGAAGGGTACGACTACACCGATGACGGCGTCAGCATCA
CCACCATCCGGTTCGGTCCTTGGGGTTGTTTATCGAAGGGTACGACTACA
CCGATGACGGCGTCAGCATCACCACCATCCGGTTCGGTCCTTGGGGGATT
GGCCTCGAGGGTAGTTCTGAGGCTCTCTACACGACTCAAACAAGCTGCGA
GGACGACGGAGCGCTAGCCACGGGTGTCGAGGTGACATTTCAGGGCGAAG
AAGACAGAGCAGAGGTCGTCGTGGCGATGAGGCTGCGATGCGCCAAGATC
ACCTCGACCTGCGTCGCCCCCCCCTTCAGCACGTCCGACTCGGGATTGGC
CTCGAGGGTAGTTCTGAGGCTCTCTACACGACTCAAACAAGCTGCGAGGA
CGACGGAGCGCTAGCCACGGGTGTCGAGGTGACATTTCAGGGCGAAGAAG
ACAGAGCAGAGGTCGTCGTGGCGATGAGGCTGCGATGCGCCAAGATCACC
TCGACCTGCGTCGCCCCCCCCTTCAGCACGTCCGACTCGGGTGCCGGAGT
TGGCGAAGCTTTGTCTACCGGCACGTCATCTCCTATACGAGACATCGTGC
CGGAGTTGGCGAAGCTTTGTCTACCGGCACGTCATCTCCTATACGAGACA
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