mRNA_L-elsbetiae_contig8845.17869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig8845.17869.1
Unique NamemRNA_L-elsbetiae_contig8845.17869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8845.17869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig8845contigL-elsbetiae_contig8845:2658..3666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1009
Cds size708
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816962.340137-CDS-L-elsbetiae_contig8845:2657..33651622816962.340137-CDS-L-elsbetiae_contig8845:2657..3365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8845 2658..3365 +
1691683944.543791-CDS-L-elsbetiae_contig8845:2657..33651691683944.543791-CDS-L-elsbetiae_contig8845:2657..3365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig8845 2658..3365 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816962.351352-UTR-L-elsbetiae_contig8845:3365..36661622816962.351352-UTR-L-elsbetiae_contig8845:3365..3666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8845 3366..3666 +
1691683944.553723-UTR-L-elsbetiae_contig8845:3365..36661691683944.553723-UTR-L-elsbetiae_contig8845:3365..3666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig8845 3366..3666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig8845.17869.1prot_L-elsbetiae_contig8845.17869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig8845 2658..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig8845.17869.1

>prot_L-elsbetiae_contig8845.17869.1 ID=prot_L-elsbetiae_contig8845.17869.1|Name=mRNA_L-elsbetiae_contig8845.17869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
PPSRYSTPSGHTVANRFLRRARCGVASPGASSSVGSVGCGVTPIGHIFAS
RLPKRAGCGVASPGASSSVGSVGCGITPGSRIVVSHLSKRAKPGAAAAPR
RPSCPSGPRSSSSPLPWSDLLSAPLSVNHIVVAHQVKRRRHDPLGNIGVL
DALEILLTQRRRFVYNKCYTYSVYHVFRFYPCKHFLFPQLTTEREVPVLI
PHGHVTAPSCSRSPRNVRHQLYIFARNDYLGSPAY*
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mRNA from alignment at L-elsbetiae_contig8845:2658..3666+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig8845.17869.1 ID=mRNA_L-elsbetiae_contig8845.17869.1|Name=mRNA_L-elsbetiae_contig8845.17869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1009bp|location=Sequence derived from alignment at L-elsbetiae_contig8845:2658..3666+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCTCGCGCTATAGCACCCCCAGCGGGCACACCGTCGCCAACCGTTT
CCTTAGACGAGCCAGGTGCGGTGTCGCCTCCCCCGGAGCCAGCTCCAGCG
TTGGCAGTGTTGGGTGTGGTGTCACCCCCATCGGACACATCTTCGCCAGC
CGCCTCCCCAAACGAGCCGGGTGCGGTGTCGCCTCCCCCGGAGCCAGCTC
CAGCGTTGGCAGTGTCGGATGTGGCATCACTCCCGGCAGTCGAATAGTCG
TCAGCCACCTCTCCAAACGAGCCAAACCTGGTGCCGCCGCCGCTCCCCGC
CGCCCCTCCTGCCCATCTGGGCCCCGGTCCTCCTCGTCACCCTTGCCCTG
GTCGGACCTCCTGTCGGCTCCACTGTCTGTCAATCACATCGTCGTTGCCC
ACCAGGTCAAGAGACGCAGACACGACCCCCTCGGCAACATCGGCGTTCTC
GATGCCCTTGAAATATTATTAACACAGAGAAGAAGATTTGTTTATAACAA
ATGTTATACATATTCCGTCTATCACGTATTTCGTTTTTACCCCTGCAAAC
ACTTCCTATTCCCACAACTGACCACCGAGCGCGAAGTGCCGGTACTGATC
CCACACGGCCACGTAACGGCTCCCTCTTGTAGCAGGAGCCCAAGAAATGT
AAGGCATCAGCTTTACATCTTTGCGCGCAATGATTATCTCGGAAGTCCAG
CTTATTAAGCTGCTCGGCCCCAAGAAGCAAAAACATGCAATCAACCCACC
CACCAGAATTCCGCATCACTTTCTCCAACAAGGCCCTTGATCGAATGTCG
TATCCAGTTTTTTCAGCGCCTACTGGAATCTTTTCTTGCGGTTATCTCTG
CCTCTGAAGGCATCGATGCTGGCTTTGCAGCGAGGTGGCCTCGTGATCTA
CGGACCACTCTCTCACGAATATTATATTCAGGAAGGCATCCACATCATCC
TCCGTAAGTTCTTCGTTGATGGCGTCACGAACAACATGGCTGAAGGGTTC
GTGGCAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig8845:2658..3666+

>mRNA_L-elsbetiae_contig8845.17869.1 ID=mRNA_L-elsbetiae_contig8845.17869.1|Name=mRNA_L-elsbetiae_contig8845.17869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig8845:2658..3666+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCTCGCGCTATAGCACCCCCAGCGGGCACACCGTCGCCAACCGTTT
CCTTAGACGAGCCAGGTGCGGTGTCGCCTCCCCCGGAGCCAGCTCCAGCG
TTGGCAGTGTTGGGTGTGGTGTCACCCCCATCGGACACATCTTCGCCAGC
CGCCTCCCCAAACGAGCCGGGTGCGGTGTCGCCTCCCCCGGAGCCAGCTC
CAGCGTTGGCAGTGTCGGATGTGGCATCACTCCCGGCAGTCGAATAGTCG
TCAGCCACCTCTCCAAACGAGCCAAACCTGGTGCCGCCGCCGCTCCCCGC
CGCCCCTCCTGCCCATCTGGGCCCCGGTCCTCCTCGTCACCCTTGCCCTG
GTCGGACCTCCTGTCGGCTCCACTGTCTGTCAATCACATCGTCGTTGCCC
ACCAGGTCAAGAGACGCAGACACGACCCCCTCGGCAACATCGGCGTTCTC
GATGCCCTTGAAATATTATTAACACAGAGAAGAAGATTTGTTTATAACAA
ATGTTATACATATTCCGTCTATCACGTATTTCGTTTTTACCCCTGCAAAC
ACTTCCTATTCCCACAACTGACCACCGAGCGCGAAGTGCCGGTACTGATC
CCACACGGCCACGTAACGGCTCCCTCTTGTAGCAGGAGCCCAAGAAATGT
AAGGCATCAGCTTTACATCTTTGCGCGCAATGATTATCTCGGAAGTCCAG
CTTATTAACCCCCCTCGCGCTATAGCACCCCCAGCGGGCACACCGTCGCC
AACCGTTTCCTTAGACGAGCCAGGTGCGGTGTCGCCTCCCCCGGAGCCAG
CTCCAGCGTTGGCAGTGTTGGGTGTGGTGTCACCCCCATCGGACACATCT
TCGCCAGCCGCCTCCCCAAACGAGCCGGGTGCGGTGTCGCCTCCCCCGGA
GCCAGCTCCAGCGTTGGCAGTGTCGGATGTGGCATCACTCCCGGCAGTCG
AATAGTCGTCAGCCACCTCTCCAAACGAGCCAAACCTGGTGCCGCCGCCG
CTCCCCGCCGCCCCTCCTGCCCATCTGGGCCCCGGTCCTCCTCGTCACCC
TTGCCCTGGTCGGACCTCCTGTCGGCTCCACTGTCTGTCAATCACATCGT
CGTTGCCCACCAGGTCAAGAGACGCAGACACGACCCCCTCGGCAACATCG
GCGTTCTCGATGCCCTTGAAATATTATTAACACAGAGAAGAAGATTTGTT
TATAACAAATGTTATACATATTCCGTCTATCACGTATTTCGTTTTTACCC
CTGCAAACACTTCCTATTCCCACAACTGACCACCGAGCGCGAAGTGCCGG
TACTGATCCCACACGGCCACGTAACGGCTCCCTCTTGTAGCAGGAGCCCA
AGAAATGTAAGGCATCAGCTTTACATCTTTGCGCGCAATGATTATCTCGG
AAGTCCAGCTTATTAA
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