mRNA_L-elsbetiae_contig8841.17867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI) HSP 1 Score: 248 bits (633), Expect = 1.870e-70 Identity = 140/238 (58.82%), Postives = 174/238 (73.11%), Query Frame = 2
Query: 2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGAS-GGASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGA 709
SRH+ ++++QR+ELA PG + YY A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ L+ LS PVV GLA AAAALKAGDR +QTRRV KI D+A D+ +CC LAR LA +L+DG GT+ T+ A TTAG+GG GGC WS IGAS A+EEA ++WFVEEVA+ EP N ARK TP QAG+KLG +HL TLL A+GR+CLRG T +EKV+ L+ ++ P A
Sbjct: 688 SRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGAAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGTHTTAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNLDARKTTPAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 925
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI) HSP 1 Score: 245 bits (626), Expect = 3.590e-70 Identity = 139/238 (58.40%), Postives = 173/238 (72.69%), Query Frame = 2
Query: 2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGAS-GGASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGA 709
SRH+ ++++QR+ELA PG + YY A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ L+ LS PVV GLA AAAALKAGDR +QTRRV KI D+A D+ +CC LAR LA +L+DG GT+ T+ A TAG+GG GGC WS IGAS A+EEA ++WFVEEVA+ EP N ARK T QAG+KLGK+HL TLL A+GR+CLRG T +EKV+ L+ ++ P A
Sbjct: 476 SRHVMNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDIAPDSTDCCLLARTLALQLSDGYVDGTLPTTDTAEERGSHATAGMGGVEGGCGWSQDIGASPDSATEEAVMDWFVEEVADYEPNNVDARKTTAAVQAGRKLGKRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 713
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FUA1_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA1_ECTSI) HSP 1 Score: 241 bits (616), Expect = 1.130e-68 Identity = 138/238 (57.98%), Postives = 170/238 (71.43%), Query Frame = 2
Query: 2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGAS-GGASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGA 709
SRH+ ++++QR+ELA PG + YY A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ L+ LS PVV GLA AAAALKAGDR +QTRRV KI DMA D+ +CC LAR LA +L+DG GT+ T A TTAG+GG G C WS IGAS A+EEA ++WFVEEVA+ EP ARK T QAG+KLG +HL TLL A+GR+CLRG T +EKV+ L+ ++ P A
Sbjct: 503 SRHVTNEDIQRRELALPPGPKAYYTAIRTGLCNAYLAASVVSSSLVCTSKTGRMGTAGKTLEFLSSAVPVVSGLAGLAAAALKAGDRYLQTRRVSKICDMAPDSTDCCLLARALALQLSDGYVDGTLPTIDTAEERGTHTTAGMGGVEGECGWSQDIGASPDSATEEAVMDWFVEEVADYEPNKLDARKTTAAVQAGRKLGTRHLQTLLKAVGRDCLRGTNTPDEKVKVLVGIILPEA 740
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI) HSP 1 Score: 234 bits (597), Expect = 1.570e-67 Identity = 146/282 (51.77%), Postives = 181/282 (64.18%), Query Frame = 2
Query: 224 ASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAG--GCDWSASIGASGG-ASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAPVS-APPHDGSLNREAEFAAMKAKLEALELADERRQAKLDAVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQ-IHLQRRKAKTQEERWDEMAES 1054
A FAA ALKAGD NIQTRRV+K+ D+A DAVECCS+A+ L RLTD ++ TI+TS G + AG G GAG C+WS S G AS+E F+EWF EE A+C P N K TPEE+ G++LGK+H+ +L A+ R CL+G IEEKVE+LL+VV P A V+ + E+ P + AP HDG L+ AEFAAM+AKLEALE+ EN KL KV T+EK IPK G+PSD VD GGGQ + +R+ KTQEE W EMAES
Sbjct: 386 AGFAAEALKAGDNNIQTRRVIKMTDLAPDAVECCSVAKLLGLRLTDYLSDETITTSYDGRGGPVHSAAGFGEGAGIGACEWSQSNGGLPDCASDEDFMEWFAEEAASCVPNNTG-KSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHAEFAAMQAKLEALEI--------------ENGKLTRKVSTMEKSIPKPQGEPSDEVDVGGGQALAFKRKVKKTQEEVWQEMAES 652
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 222 bits (565), Expect = 4.440e-62 Identity = 154/360 (42.78%), Postives = 202/360 (56.11%), Query Frame = 2
Query: 5 RHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGASGGASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAP-VSAPPHDGSLNREAEFAAMKAKLEALELADERRQAKLD---------------------AVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQIHLQRRKAK 1018
RH ED +QRKELA YY AVR+GLC AYLAASV+ S+ V TSKTGG+G AG +KL+S PVVGGL A AL+AGD +QTRR+VKI MA+DAV+CC LARRLA +LTDG+ +T+ A R TTAG+ GGA D + G SEE E+ +EEVA+ + + G +LGK+HL LL AI R L G+ E+K+E L+ + P A T A L T ++ + +P V P HDG L AEF AM+A LEAL+ E +Q AV++ NK+L KV +EKR+P+ +P D + G Q+ Q+ + K
Sbjct: 477 RHTEDMNIQRKELALPAFSNAYYSAVRSGLCQAYLAASVIDSDWVSTSKTGGMGKAGAAMKLMSSAVPVVGGLPELAGKALEAGDHYLQTRRLVKITAMASDAVDCCFLARRLALQLTDGLRNDAGATADNADEVRVDTTAGMNGGA---DMT-----PGDMSEEDVFEYLLEEVASYKRN---------DHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRETQQXXXXXXXXXXXXXXXXXXXXXXXXXAVESRNKQLREKVAAMEKRVPEGDCEPCDRGNAEGRQVLQQKLEMK 819
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5KEA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEA4_9PHAE) HSP 1 Score: 210 bits (534), Expect = 8.350e-61 Identity = 137/258 (53.10%), Postives = 163/258 (63.18%), Query Frame = 2
Query: 170 AGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVK-----------------------IADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGA-SGGASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAP-VSAPPHDGSLNREAEFAAMKAKLEALELADERRQ 868
AGE ++LLS PVVGGLASFAAAALKA D +QTRRVVK I D+AADAVE CSLARRLA R+T+G+AAGTIST+ + G R W+ +GA G SEEA +EWF EEVAN E A + TP EQAG++LGKQHL LL A+G+ L G T EEKVE+LL+V+A G+ + P +K L P V AP HDG L+R+AEFAA+KAKLEALELADERRQ
Sbjct: 143 AGEAMQLLSHAVPVVGGLASFAAAALKARDHRMQTRRVVKHLQPSTYVHSRPTGLNQLFDDWQITDLAADAVERCSLARRLALRMTEGLAAGTISTTDNSVGGR--------------GWNLDLGALPDGTSEEAVMEWFTEEVANHEANTTASRGTPAEQAGRRLGKQHLKKLLMAVGQGRLLGTNTTEEKVEKLLEVIAGGSGSRVTKPPRAEDKSLVEYPAVPAPSHDGDLDRDAEFAALKAKLEALELADERRQ 386
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI) HSP 1 Score: 211 bits (538), Expect = 1.370e-57 Identity = 147/351 (41.88%), Postives = 196/351 (55.84%), Query Frame = 2
Query: 2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWS-ASIGASGGASEEAFLEWFVEEVANCEP-GNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAPVSAPP--------------HDGSLNREAEFAAMKAKLEALELADERRQAKLDAVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQIHLQR 1006
S HMED+ MQ +E + Y+ AVR G+CNA+LA+SVVGSNLV TSKTGG+G AG+ LKLLS P+VGGL A+AALK GDR IQTRRVVKIAD+A DAVECCSLARRLA GGG WS GA + +EWF +EVAN EP + A + TPEEQAG++LGK+HL TLL A+G L GA +IEEKVE L++ V P +V+ + + P S D + + AA+ ++++L ++ LD A+ KL ++V ++++++ KS+ D +V GGGQ +QR
Sbjct: 789 SSHMEDQWMQEREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXX-----XXXXXXXXXGGGG----WSQGEYALPDGARDRDVMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPEDEGNAVSTPQAPDVVVEQVPSSTDSVLRQTDSAASLLIGRDSVESDVSSVAALMGEIQSLRVS-------LDDSNAKQSKLENEVSSLKEKV-KSAPDSDGVVSIGGGQALMQR 1122
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5JSF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF6_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.550e-55 Identity = 115/200 (57.50%), Postives = 138/200 (69.00%), Query Frame = 2
Query: 2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGASGG-ASEEAFLEWFVEEVANCEPGN-GARKMTPEEQAGKKL 595
SRH+ ++ +QR+ELA PG + YY+A+RTGLCNAYLAASVV S+LV TSKTG +G AG+ LK LS PVVGGLA AAAAL AGDR +QTRRV KI D+A D+ CCSLAR LA +L+DG G + T+ A TTAG GG WS IGAS A+EEA ++WFVEEVA+ EP N ARK TP Q + L
Sbjct: 8 SRHVVNEAIQRRELALPPGPKAYYMAIRTGLCNAYLAASVVCSSLVCTSKTGRMGTAGKTLKFLSSAVPVVGGLAGLAAAALNAGDRYLQTRRVSKICDIAPDSAGCCSLARTLALQLSDGYVDGALPTTDTAEERGTHTTAGGGG------WSQDIGASPDPATEEAVMDWFVEEVADYEPNNLDARKTTPAVQVYEDL 201
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE) HSP 1 Score: 204 bits (518), Expect = 6.640e-55 Identity = 149/358 (41.62%), Postives = 190/358 (53.07%), Query Frame = 2
Query: 2 SRHMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDW-SASIGASGGASEEAFLEWFVEEVANCEPGNG-ARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVA--------------PLDTLEKPLGWAPVSAPPHDGSLNREAEFAAMKAKLEALELADERRQAKLDAVQAENKKLMSKVGTIEKRIPKSSGDPSDLVDTGGGQIHLQRRKAKTQE 1027
S HMED+ MQ +E + Y+ AVR G+CNA+LA+SVVGSNLV TSKTGG+G AG+ L LLS P+VGGL AA ALK GDR IQTRRV KIAD+A DAVECCSLARRLA G W GA E+ +EWF +EV+N EP + A +MTPEEQAG +LGK+HL TLL A+G CL GA IEEKVE L++ V P +V+ P+D++ KP D + AA+ ++ +L ++ + AK ++ E K+M KV K +P S G ++ G GQ QR KT E
Sbjct: 816 SSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXG---------WRQGEYALPDGAGEKDVMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPEDEGNAVSTPRAPNVLLEQVPSPIDSVLKPTDSPASPLVGRDSPEIDASTIAALMEEMRSLWVSLKDWNAKHSDLENEVSKIMEKV----KSLPDSDG----VLSIGEGQALKQRVYDKTPE 1156
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 202 bits (513), Expect = 3.060e-54 Identity = 133/291 (45.70%), Postives = 176/291 (60.48%), Query Frame = 2
Query: 8 HMEDKEMQRKELAFRPGCRVYYVAVRTGLCNAYLAASVVGSNLVQTSKTGGLGMAGEVLKLLSGVAPVVGGLASFAAAALKAGDRNIQTRRVVKIADMAADAVECCSLARRLAFRLTDGMAAGTISTSGKAAGFRCPTTAGVGGGAGGCDWSASIGASGGASEEAFLEWFVEEVANCEPGNGARKMTPEEQAGKKLGKQHLYTLLGAIGRNCLRGAITIEEKVERLLQVVAPGAATGSVAPLDTLEKPLGWAPVS-APPHDGSLNREAEFAAMKAKLEALELADERRQAKL 877
H ED ++QRKELA P + YY AVR+GLCNAYLAASV+ S+ V T KTGG+G G L LLS PV+ GLA A AL+ GD +QTRR+VKI MAAD +ECCSLARRLA +LTDG+ T +A TAG+ GG+G A I ++ F E+ +EEVA E + GK+LGK+HL LL AI R CL G+ I++K+E LL + PGA + T +K + +P + AP HDG L A+ AA++A +E L LA ++++A+L
Sbjct: 505 HTEDMDVQRKELALTPFSKAYYTAVRSGLCNAYLAASVIDSDWVSTCKTGGMGKGGTALVLLSSAVPVISGLAGLAGKALRTGDHCLQTRRLVKITAMAADTMECCSLARRLALQLTDGLKDDTGMMDDEADQVYTHITAGMNGGSG-SGRDADISPDDMIEDDVF-EYLLEEVARYERS---------DHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKDKQRAEL 784 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig8841.17867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig8841.17867.1 >prot_L-elsbetiae_contig8841.17867.1 ID=prot_L-elsbetiae_contig8841.17867.1|Name=mRNA_L-elsbetiae_contig8841.17867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=180bp MLFVGEEVGLSTHRWDGSGHHLHERQGGRISLSHHGRGWRWGRRVRLECEback to top mRNA from alignment at L-elsbetiae_contig8841:3600..6828- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig8841.17867.1 ID=mRNA_L-elsbetiae_contig8841.17867.1|Name=mRNA_L-elsbetiae_contig8841.17867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3229bp|location=Sequence derived from alignment at L-elsbetiae_contig8841:3600..6828- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig8841:3600..6828- >mRNA_L-elsbetiae_contig8841.17867.1 ID=mRNA_L-elsbetiae_contig8841.17867.1|Name=mRNA_L-elsbetiae_contig8841.17867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1080bp|location=Sequence derived from alignment at L-elsbetiae_contig8841:3600..6828- (Laminarionema elsbetiae ELsaHSoW15)back to top |